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* Correct name and add mingw to 32bit toolchainAllen Byrne2019-09-052-1/+37
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* Fix build for tools library testAllen Byrne2019-09-052-12/+9
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* Merge pull request #1917 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-09-031-1/+14
|\ | | | | | | | | * commit '781843da4b90d6d22f8a27b6abaad441631ab3d1': Fix CMake build of test needing compression libs
| * Fix CMake build of test needing compression libsAllen Byrne2019-09-031-1/+14
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* Merge pull request #1908 in HDFFV/hdf5 from ~BMRIBLER/hdf5-bmr:develop to ↵Binh-Minh Ribler2019-09-0314-96/+2719
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop - Added new chunk query functions: H5Dget_num_chunks(), H5Dget_chunk_info(), and H5Dget_chunk_info_by_coord() - Fixed iterator issue in H5EA_iterate(), H5FA_iterate(), and H5D__none_idx_iterate() * commit '96dab622e3bbe75d85b0cef3ca2bd5288cf4ac32': Fixed error code and error messages Tested on Jelly (very minor) Changed H5VL_NATIVE_DATASET_GET_CHUNK_INFO_BY_COOR to H5VL_NATIVE_DATASET_GET_CHUNK_INFO_BY_COORD per a review comment. Updated comments Updated based on reviews and refactored test code Code cleanup and refactor Re-ordered items w.r.t. date. Fixed typo Added notes about HDFFV-10677 and HDFFV-10661 HDFFV-10677 and HDFFV-10661
| * Fixed error code and error messagesBinh-Minh Ribler2019-09-032-27/+27
| | | | | | | | Tested on Jelly (very minor)
| * Changed H5VL_NATIVE_DATASET_GET_CHUNK_INFO_BY_COOR toBinh-Minh Ribler2019-09-033-3/+3
| | | | | | | | H5VL_NATIVE_DATASET_GET_CHUNK_INFO_BY_COORD per a review comment.
| * Updated commentsBinh-Minh Ribler2019-09-011-1/+9
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| * Updated based on reviews and refactored test codeBinh-Minh Ribler2019-09-014-779/+815
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| * Code cleanup and refactorBinh-Minh Ribler2019-08-292-72/+47
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| * Re-ordered items w.r.t. date.Binh-Minh Ribler2019-08-281-49/+50
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| * Fixed typoBinh-Minh Ribler2019-08-281-1/+1
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| * Added notes about HDFFV-10677 and HDFFV-10661Binh-Minh Ribler2019-08-281-0/+21
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| * Merge branch 'develop' of ↵Binh-Minh Ribler2019-08-2813-428/+1004
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5-bmr into develop
| * | HDFFV-10677 and HDFFV-10661Binh-Minh Ribler2019-08-2813-67/+2649
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Added functions to query chunk information: H5Dget_num_chunks(dset_id, fspace_id, *nchunks) Gets the number of written chunks that intersect with the given dataspace. However, in this version, the intersection is not yet completed. Thus, the number of all written chunks will be returned. H5Dget_chunk_info_by_coord(dset_id, *offset, *filter_mask, *addr, *size) Given a chunk's logical coordinates, returns the chunk's filter, address, and size. H5Dget_chunk_info(dset_id, fspace_id, index, *offset, *filter_mask, *addr, *size) Given a chunk's index, returns the chunk's logical coordinates, filter, address, and size. The chunk belongs to a set of chunks that have nonempty intersection with the specified dataspace. However, in this version, the intersection is not yet completed, and the index is of all the written chunks. These functions comply with VOL. - Fixed some oversights found in the library for the tests in chunk_info.c to work correctly. The returned value from a callback function was not checked in H5EA_iterate(), H5FA_iterate(), and H5D__none_idx_iterate(). This oversight caused a callback function to continue iterating even though it's supposed to stop. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
* | | Merge pull request #1914 in HDFFV/hdf5 from ↵Vailin Choi2019-09-036-46/+32
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/shared_file_pointer to develop * commit '62750441cdfbf17f7fa5db3bbf1320c1dc5be838': Add comment to add tests later to verify conflicting values for MPI-specific properties on multiple opens. Move ext_path field in H5F_t to H5F_shared_t. Remove unused routine H5F_set_coll_md_read(). Move coll_md_read and coll_md_write fields in H5F_t to H5F_shared_t.
| * | | Add comment to add tests later to verify conflicting values for MPI-specific ↵Vailin Choi2019-09-021-0/+5
| | | | | | | | | | | | | | | | properties on multiple opens.
| * | | Move ext_path field in H5F_t to H5F_shared_t.Vailin Choi2019-08-314-33/+12
| | | | | | | | | | | | | | | | Remove unused routine H5F_set_coll_md_read().
| * | | Move coll_md_read and coll_md_write fields in H5F_t to H5F_shared_t.Vailin Choi2019-08-315-14/+16
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* | | Merge pull request #1911 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-08-3012-35/+75
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'e6c11af8704c3ac923dd6afcefaf20c568157770': Fix namespace usage Fix EXISTS test syntax Update settings Add 32-bit cross-compile toolchain
| * | | Fix namespace usageAllen Byrne2019-08-291-3/+3
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| * | | Fix EXISTS test syntaxAllen Byrne2019-08-2910-34/+34
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| * | | Update settingsAllen Byrne2019-08-291-2/+4
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| * | | Add 32-bit cross-compile toolchainAllen Byrne2019-08-292-0/+38
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* | | Merge pull request #1904 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-08-2817-690/+694
|\ \ \ | |_|/ |/| | | | | | | | | | | | | | | | | * commit '1efd23ff02b9bc1a3d303d53395245d1366588be': Whitespace and HD prefix changes fix get gethostname for windows OESS-29 Fix HD prefix in perform and enable test compile HDFFV-10876 h5dump OPAQUE size should be optional
| * | Whitespace and HD prefix changesAllen Byrne2019-08-281-298/+294
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| * | fix get gethostname for windowsAllen Byrne2019-08-282-1/+3
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-08-2712-426/+1002
| |\ \ | |/ / |/| | | | | | | | | | | | | | * commit 'fb8296371cf45654a9252ed01b635519205da3de': Minor tweaks to new H5P MPI code based on code review feedback. Fixed a bug in the cache image code that was introduced by the HD changes. Added H5Pset/get_mpi_params calls and unified them with the MPI-I/O VFD info in H5FDmpio.c.
* | | Merge pull request #1896 in HDFFV/hdf5 from ↵Dana Robinson2019-08-2712-426/+1002
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:H5Pset_fapl_mpi to develop * commit '937616872cf228f838fd1eb2853ce6110f3da10b': Minor tweaks to new H5P MPI code based on code review feedback. Fixed a bug in the cache image code that was introduced by the HD changes. Added H5Pset/get_mpi_params calls and unified them with the MPI-I/O VFD info in H5FDmpio.c.
| * | | Minor tweaks to new H5P MPI code based on code review feedback.Dana Robinson2019-08-272-23/+17
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| * | | Merge branch 'develop_minor_pr' into H5Pset_fapl_mpiDana Robinson2019-08-272-2/+2
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| | * | | Fixed a bug in the cache image code that was introduced by the HDDana Robinson2019-08-271-1/+1
| |/ / / |/| | | | | | | | | | | changes.
| * | | Merge branch 'develop' into H5Pset_fapl_mpiDana Robinson2019-08-2734-1763/+1757
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| * | | Merge branch 'develop' into H5Pset_fapl_mpiDana Robinson2019-08-277-6/+24
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| * | | | Added H5Pset/get_mpi_params calls and unified them with the MPI-I/ODana Robinson2019-08-2611-425/+1007
| | | | | | | | | | | | | | | | | | | | VFD info in H5FDmpio.c.
| | | | * OESS-29 Fix HD prefix in perform and enable test compileAllen Byrne2019-08-2712-373/+380
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| | | | * HDFFV-10876 h5dump OPAQUE size should be optionalAllen Byrne2019-08-273-18/+17
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* | | | Merge pull request #1903 in HDFFV/hdf5 from ↵Dana Robinson2019-08-271-1/+1
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_minor_pr to develop * commit '9a4f86997ad160bcc8a3f9eefdbd92d4a63e14c6': Fixed typo from HD changes
| * | | | Fixed typo from HD changesDana Robinson2019-08-271-1/+1
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* | | | Merge pull request #1902 in HDFFV/hdf5 from ↵Dana Robinson2019-08-271-1/+1
|\ \ \ \ | |_|_|/ |/| | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:fcntl_lock_bug to develop * commit 'd42de626b604b75963fd593a145fd9c9b9e20602': Fixed a bug where we incorrectly pass a lock struct to fcntl for file locking instead of a pointer.
| * | | Fixed a bug where we incorrectly pass a lock struct to fcntlDana Robinson2019-08-271-1/+1
| | |/ | |/| | | | | | | for file locking instead of a pointer.
* | | Merge pull request #1899 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-08-271-8/+8
|\ \ \ | | | | | | | | | | | | | | | | * commit '392340062b7c130a02368aee79bc34ba9868038a': Add HD prefix
| * | | Add HD prefixAllen Byrne2019-08-271-8/+8
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| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-08-277-6/+24
| |\ \ \ | |/ / / |/| | | | | | | | | | | | | | | * commit 'ddf04a9a727252f40197c48da541212dff646046': Add a 'closing' flag on the shared file struct, and switch several of the "internal" data structures to use it. Fixed the assertion failure for HDFFV-10873.
* | | | Merge pull request #1893 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-08-2736-1783/+1777
|\ \ \ \ | |/ / / | | / / | |/ / |/| | * commit 'ba974c031deb709b6d4241da95485b48d747afdd': OESS-29 Update HD prefix mostly
| * | OESS-29 Update HD prefix mostlyAllen Byrne2019-08-2436-1783/+1777
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* | Merge pull request #1897 in HDFFV/hdf5 from ~KOZIOL/hdf5:refactor_file to ↵Quincey Koziol2019-08-265-5/+9
|\ \ | | | | | | | | | | | | | | | | | | develop * commit '3090ac81506094ee510ae89c31749b5c1632aa34': Add a 'closing' flag on the shared file struct, and switch several of the "internal" data structures to use it.
| * | Add a 'closing' flag on the shared file struct, and switch several of theQuincey Koziol2019-08-265-5/+9
| |/ | | | | | | "internal" data structures to use it.
* | Merge pull request #1892 in HDFFV/hdf5 from ↵Vailin Choi2019-08-262-1/+15
|\ \ | |/ |/| | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-10873-assertion-v-oh--nmesgs-failed to develop * commit '021919206df7764f951037ae76ccae006b2eea99': Fixed the assertion failure for HDFFV-10873.
| * Fixed the assertion failure for HDFFV-10873.Vailin Choi2019-08-232-1/+15
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