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* Merge in latest from developJordan Henderson2019-02-12126-16482/+19094
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| * Merge pull request #1533 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-02-1117-38/+38
| |\ | | | | | | | | | | | | * commit '6f71b2cdcf3326b1d7bc67cf664b56d2f4056bfd': Refactor mpi test names
| | * Refactor mpi test namesAllen Byrne2019-02-1117-38/+38
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| * Merge pull request #1530 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developLarry Knox2019-02-1125-338/+263
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'edcbc9966f5c742970ad32eb50a7925fcf7ab677': Refactor parallel test names Rename parallel tests to start with PAR_ Distinguish parallel performance tests Set the full generator name Add new cmake copy file tests to ignore Use correct values for other file versions CMake script changes to simplify execution
| | * Refactor parallel test namesAllen Byrne2019-02-1110-10/+10
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| | * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-02-1156-16057/+18127
| | |\ | | |/ | |/| | | | | | | * commit 'a3a90e79afda2351f16181ec3592b96caceffbe1': Re-write of Java JNI error handling
| * | Merge pull request #1532 in HDFFV/hdf5 from ~JHENDERSON/hdf5_merge:develop ↵Allen Byrne2019-02-1156-16057/+18127
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit 'cc6a61215e508d047ed6aa2daf67475cfe34ee4d': Re-write of Java JNI error handling
| | * | Re-write of Java JNI error handlingJordan Henderson2019-02-1156-16057/+18127
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| | * Rename parallel tests to start with PAR_Allen Byrne2019-02-116-12/+12
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| | * Distinguish parallel performance testsAllen Byrne2019-02-111-2/+2
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| | * Set the full generator nameAllen Byrne2019-02-111-1/+2
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| | * Add new cmake copy file tests to ignoreAllen Byrne2019-02-111-0/+8
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| | * Use correct values for other file versionsAllen Byrne2019-02-092-12/+12
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| | * CMake script changes to simplify executionAllen Byrne2019-02-087-315/+231
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| * Merge pull request #1528 in HDFFV/hdf5 from add_id_type_to_vol_wrap_cb to ↵Quincey Koziol2019-02-075-16/+20
| |\ | | | | | | | | | | | | | | | | | | develop * commit '163dcebec5d853b720dcb64b5e9828670b963773': Add ID type (of eventual hid_t) to the VOL "wrap" callback.
| | * Add ID type (of eventual hid_t) to the VOL "wrap" callback.Quincey Koziol2019-02-075-16/+20
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| * | Merge pull request #1527 in HDFFV/hdf5 from ~JHENDERSON/hdf5_merge:develop ↵Jordan Henderson2019-02-072-0/+7
| |\ \ | | |/ | |/| | | | | | | | | | | | | to develop * commit '28b9af4f28df6c0e4f7fbf1ce4a0f50e1797b4d3': Fix test issue in testpar/t_dset.c with MPI-2 implementations
| | * Fix test issue in testpar/t_dset.c with MPI-2 implementationsJordan Henderson2019-02-072-0/+7
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| * Merge pull request #1524 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-02-0719-247/+116
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '36e3d1600a3f9d771cfb9b4475f23c57d4b10280': Refactor out timeout values Correct name of variable Remove F2003 Option and references Remove obsolete file Update examples version Update to example reference version Switch OFF if compression source is not available Fail configure if SZIP/ZLIB is requested but not found
| | * Refactor out timeout valuesAllen Byrne2019-02-066-24/+29
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| | * Correct name of variableAllen Byrne2019-02-061-1/+1
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| | * Remove F2003 Option and referencesAllen Byrne2019-02-068-107/+68
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| | * Remove obsolete fileAllen Byrne2019-02-063-108/+1
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| | * Update examples versionAllen Byrne2019-02-061-1/+1
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| | * Update to example reference versionAllen Byrne2019-02-063-3/+3
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| | * Switch OFF if compression source is not availableAllen Byrne2019-02-051-2/+2
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| | * Fail configure if SZIP/ZLIB is requested but not foundAllen Byrne2019-02-053-5/+15
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| * | Merge pull request #1522 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2019-02-066-2/+61
| |\ \ | | |/ | |/| | | | | | | | | | | | | | | | | | | | | | develop * commit '7f5741825db0737db5ac46c43009681508a73002': Add release notes information. Modification based on feedback from pull request. Modification based on feedback from pull request. There is performance issue when closing an object. The slow down is due to the search of the "tag_list" to find out the "corked" status of an object. The fix: (1) Add a counter "num_objs_corked" in the cache structure to track the number of "corked" objects. (2) Skip the search of "tag_list" if the counter is zero i.e. no "corked" objects.
| | * Add release notes information.Vailin Choi2019-02-061-0/+10
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| | * Modification based on feedback from pull request.Vailin Choi2019-02-063-2/+7
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| | * Modification based on feedback from pull request.Vailin Choi2019-02-051-1/+1
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| | * Merge branch 'develop' of ↵Vailin Choi2019-02-051-0/+1
| | |\ | | |/ | |/| | | | https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into develop
| * | Merge pull request #1520 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:cmake_tweaks ↵Dana Robinson2019-02-041-0/+1
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '91c7ff81dcac1af7a7b609698aa69f0c213a6184': Added a line for the CMake pread/write option to INSTALL_CMake.txt.
| | * | Added a line for the CMake pread/write option to INSTALL_CMake.txt.Dana Robinson2019-02-041-0/+1
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| | * There is performance issue when closing an object. The slow down is due to ↵Vailin Choi2019-02-055-2/+46
| |/ | | | | | | | | | | | | | | | | | | the search of the "tag_list" to find out the "corked" status of an object. The fix: (1) Add a counter "num_objs_corked" in the cache structure to track the number of "corked" objects. (2) Skip the search of "tag_list" if the counter is zero i.e. no "corked" objects.
| * Merge pull request #1518 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2019-02-046-11/+15
| |\ | | | | | | | | | | | | | | | * commit '6c2a4b728f3c8eadb18d4e10d41bdbd7d1c8f3e8': Add LOCAL_BATCH_SCRIPT_ARG variable for submitting account information and other batch command variations with ctest command. Add batchscript options that work when running ctest directly.
| | * Add LOCAL_BATCH_SCRIPT_ARG variable for submitting account informationLarry Knox2019-02-043-6/+6
| | | | | | | | | | | | and other batch command variations with ctest command.
| | * Merge branch 'develop' of ↵Larry Knox2019-02-0414-44/+154
| | |\ | | |/ | |/| | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop
| * | Merge pull request #1517 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2019-02-0310-25/+53
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'c348d453b583ec9092152e6aef1f7fa9854cf5d9': Correct H5DIFF to PH5DIFF in *ctestS.sl.in.cmake list of parallel tests reserved for *ctestP.sl.cmake. Revise options to run batch tests and alternative options for cross compile in HPC/*-HDF5options.cmake. Change examples file to zip for CMake zip file. Update bin/release for filename changes and HPC-CMake tar file corrections. Add new files to MANIFEST. Update permissions for raybsub to 755.
| * \ \ Merge pull request #1515 in HDFFV/hdf5 from ↵Dana Robinson2019-02-018-23/+139
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:pread_vfd_squash to develop * commit '055208b71c573be3d4b1047b840d4d8b255bc25e': Minor tweak to CMake preadwrite entry. Updated sec2, log, and core VFDs to use pread/pwrite when available (can be controlled via a configure/CMake option)
| | * | | Minor tweak to CMake preadwrite entry.Dana Robinson2019-02-011-1/+1
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| | * | | Updated sec2, log, and core VFDs to use pread/pwrite whenDana Robinson2019-01-318-23/+139
| | | | | | | | | | | | | | | | | | | | available (can be controlled via a configure/CMake option)
| * | | | Merge pull request #1516 in HDFFV/hdf5 from ↵Dana Robinson2019-02-016-21/+15
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:valgrind_fixes to develop * commit '5f1f231310bcb3278f11a51e1ea47782f6ee3235': Updated H5Dio.c comment. Fixed a valgrind issue with the unprotect log message. The logging call was placed after the point where the cache entry was freed. The fix was to just use the entry's address directly in the log call instead of the entry itself. Fixed a bug revealed by the dtransform test. A datatype transform buffer needed to be calloc'd.
| | * | | | Updated H5Dio.c comment.Dana Robinson2019-02-011-5/+2
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| | * | | | Fixed a valgrind issue with the unprotect log message. The loggingDana Robinson2019-01-315-15/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | call was placed after the point where the cache entry was freed. The fix was to just use the entry's address directly in the log call instead of the entry itself.
| | * | | | Fixed a bug revealed by the dtransform test. A datatype transformDana Robinson2019-01-311-1/+1
| | |/ / / | | | | | | | | | | | | | | | buffer needed to be calloc'd.
| | | | * Add batchscript options that work when running ctest directly.Larry Knox2019-02-043-5/+9
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| | | * Correct H5DIFF to PH5DIFF in *ctestS.sl.in.cmake list of parallel testsLarry Knox2019-02-027-18/+32
| | | | | | | | | | | | | | | | | | | | | | | | reserved for *ctestP.sl.cmake. Revise options to run batch tests and alternative options for cross compile in HPC/*-HDF5options.cmake.
| | | * Change examples file to zip for CMake zip file.Larry Knox2019-02-011-1/+1
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| | | * Update bin/release for filename changes and HPC-CMake tar fileLarry Knox2019-02-011-7/+11
| | | | | | | | | | | | | | | | corrections.
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