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* Fixed problems that prevent bin/trace from marking up some functions.Dana Robinson2017-04-213-22/+20
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* Merge pull request #443 in HDFFV/hdf5 from ↵Dana Robinson2017-04-203-3/+126
|\ | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:eoc_parallel_prevent to develop * commit '5ed622b9ca432f1b440e8903680695ac83e28301': The cache_image test shows a skipped message about EoC in parallel. Added code to disable the evict-on-close feature in the parallel library.
| * The cache_image test shows a skipped message about EoC in parallel.Dana Robinson2017-04-203-11/+9
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| * Merge branch 'develop' into eoc_parallel_preventDana Robinson2017-04-2011-85/+103
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* | Merge pull request #444 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-04-201-1/+1
|\ \ | | | | | | | | | | | | * commit 'ea46fbe7c2bb3a8c8972c880f3609be20036d741': Correct typo of file name
| * | Correct typo of file nameAllen Byrne2017-04-201-1/+1
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* | Merge pull request #435 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2017-04-2010-84/+102
|\ \ | | | | | | | | | | | | | | | | | | | | | develop * commit '43e03c548ae2c405b92f95833251683d3eeb1440': Modifications based on review comments from pull request. Made changes according to review comments and discussion with Allen. Fix for DAILYTEST-259 h5clear test failure Deposit the test files in test/misc/testfiles for testh5clear.sh to use instead of depending on h5clear_gentest. Tested on kituo, osx1010test, quail, platypus and ostrich.
| * | Modifications based on review comments from pull request.Vailin Choi2017-04-204-106/+117
| | | | | | | | | | | | Made changes according to review comments and discussion with Allen.
| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2017-04-195-9/+18
| |\ \ | |/ / |/| | | | | | | | | | | | | | | | | | | | * commit '8f34c3cfd46054f6478b34df6af324c353e44d62': Update tool dyn lib LDFLAGS module forces .so lib to be built on osx instead of .dylib java jni lib also needs to avoid the version-info HDFFV-10170 undo patch Add plugin options for libs
| * | Merge branch 'develop' of ↵Vailin Choi2017-04-181-0/+12
| |\ \ | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into develop
| * | | Fix for DAILYTEST-259 h5clear test failureVailin Choi2017-04-189-44/+51
| | | | | | | | | | | | | | | | | | | | Deposit the test files in test/misc/testfiles for testh5clear.sh to use instead of depending on h5clear_gentest. Tested on kituo, osx1010test, quail, platypus and ostrich.
| | | * Added code to disable the evict-on-close feature inDana Robinson2017-04-193-2/+127
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* | | Merge pull request #436 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-04-185-9/+18
|\ \ \ | |_|/ |/| | | | | | | | | | | | | | | | | | | | * commit '62770c64326f844739c2753bfee49c297f2c7a39': Update tool dyn lib LDFLAGS module forces .so lib to be built on osx instead of .dylib java jni lib also needs to avoid the version-info HDFFV-10170 undo patch Add plugin options for libs
| * | Update tool dyn libAllen Byrne2017-04-181-0/+1
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2017-04-181-0/+12
| |\ \ | |/ / |/| | | | | | | | * commit 'b17ffc3cef223dc662cc330edee546841929818c': added point to build script repo.
* | | Merge pull request #434 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2017-04-181-0/+12
|\ \ \ | |_|/ |/| | | | | | | | * commit '32b8d5ffc897adae1507c5552383ca25dc6a83b8': added point to build script repo.
| * | added point to build script repo.M. Scot Breitenfeld2017-04-181-0/+12
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| * LDFLAGS module forces .so lib to be built on osx instead of .dylibAllen Byrne2017-04-181-1/+1
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| * java jni lib also needs to avoid the version-infoAllen Byrne2017-04-181-1/+1
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| * HDFFV-10170 undo patchAllen Byrne2017-04-183-9/+12
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| * Add plugin options for libsAllen Byrne2017-04-184-4/+9
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* Merge pull request #430 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-04-174-125/+121
|\ | | | | | | | | | | | | | | * commit 'e718e2ab319d398ed28d39e6119e9a128990311e': HDFFV-10170 fix command syntax ignore java classpath HDFFV-10173 fix compile on VS2008 HDFFV-10170 chnage test libs to noinst type
| * HDFFV-10170 fix command syntaxAllen Byrne2017-04-171-1/+1
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| * ignore java classpathAllen Byrne2017-04-171-0/+1
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| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2017-04-172-17/+91
| |\ | |/ |/| | | | | * commit '5f7822fac4673cdb9e8ed60d104566c9df43303f': Express test mods to test/cache.c
* | Merge pull request #427 in HDFFV/hdf5 from ~MAINZER/hdf5_jrm:develop to developJohn Mainzer2017-04-172-17/+91
|\ \ | | | | | | | | | | | | * commit '4651eb738df5d31c62eae1f9fb70b1685c610e0c': Express test mods to test/cache.c
| * | Express test mods to test/cache.cmainzer2017-04-152-17/+91
|/ / | | | | | | | | | | | | | | | | | | Modified test/cache.c to skip the smoke checks with paged aggregation for all express test levels other than 0 Change to src/H5PL.c seems to be the result of autogen.sh. As it seems to be correct, I am checking it in. Tested serial and parallel (debug only) on jelly.
| * HDFFV-10173 fix compile on VS2008Allen Byrne2017-04-171-118/+118
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| * HDFFV-10170 chnage test libs to noinst typeAllen Byrne2017-04-132-7/+2
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* Merge pull request #422 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developJordan Henderson2017-04-133-0/+103
|\ | | | | | | | | * commit '606529f5e0cffcea26af66106f094fbe350c5bac': Due to HDFVIEW-19 add read VL as string function
| * Due to HDFVIEW-19 add read VL as string functionAllen Byrne2017-04-123-0/+103
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* | Merge pull request #421 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2017-04-131-2/+11
|\ \ | |/ |/| | | | | | | | | develop * commit '3d1b227a67b557da247f6b683f58617b6d75bfdb': Skip tests for page buffering in test/fheap.c for parallel build Skip the two tests for page buffering in test/fheap.c because this feature is disabled in parallel. Activate full testing when this feature is re-enabled in the future for parallel build.
| * Skip tests for page buffering in test/fheap.c for parallel buildVailin Choi2017-04-131-2/+11
|/ | | | | Skip the two tests for page buffering in test/fheap.c because this feature is disabled in parallel. Activate full testing when this feature is re-enabled in the future for parallel build.
* Merge pull request #410 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2017-04-123-221/+78
|\ | | | | | | | | | | * commit '265950a83a68ea55b5bc8dcbefa2d09b4f8110be': updated with README changes Combined the README_DEVEL and README, and removed out-dated README material
| * updated with README changesM. Scot Breitenfeld2017-04-111-1/+0
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| * Combined the README_DEVEL and README, and removed out-dated README materialM. Scot Breitenfeld2017-04-112-220/+78
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* | Merge pull request #409 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2017-04-124-52/+44
|\ \ | | | | | | | | | | | | | | | | | | develop * commit '7eda1e3c6a57f79b59fc35518816db4e3a2b382d': Fix for H5Dset_extent test failure with extensive array indexing (HDFFV-9771) 1) Calculate chunk index for extensive array index based on swizzled max chunks when unlim_dim > 0 2) Minor fixes to test/fheap.c that somehow were missed from last check in. See pull request #396 review comments.
| * \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2017-04-1122-23/+23
| |\ \ | |/ / |/| | | | | | | | | | | * commit '2821b8bd768138db6b5f917a5b7325f878f8f7d0': Fix URL name DAILYTEST-250 change test props to reduce timeout
* | | Merge pull request #412 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-04-1122-23/+23
|\ \ \ | |_|/ |/| | | | | | | | | | | * commit '8a9e4b94c3938f4c42ad9399737afc6478ded160': Fix URL name DAILYTEST-250 change test props to reduce timeout
| * | Fix URL nameAllen Byrne2017-04-1121-21/+21
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| * | DAILYTEST-250 change test props to reduce timeoutAllen Byrne2017-04-111-2/+2
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| * Fix for H5Dset_extent test failure with extensive array indexing (HDFFV-9771)Vailin Choi2017-04-114-52/+44
|/ | | | | 1) Calculate chunk index for extensive array index based on swizzled max chunks when unlim_dim > 0 2) Minor fixes to test/fheap.c that somehow were missed from last check in. See pull request #396 review comments.
* Merge pull request #405 in HDFFV/hdf5 from ~MAINZER/hdf5_jrm:develop to developJohn Mainzer2017-04-078-26/+293
|\ | | | | | | | | | | * commit 'eb75dc1bb02e13902d73a36caafe763eea585d02': Removed commeted out code from H5C_dump_coll_write_list() Checkin of fix for CGNS bug (https://jira.hdfgroup.org/browse/HDFFV-10055).
| * Removed commeted out code from H5C_dump_coll_write_list()mainzer2017-04-071-5/+0
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| * Merge branch 'develop' of ↵mainzer2017-04-063-6/+17
| |\ | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~mainzer/hdf5_jrm into develop Update to permit push to develop_jrm fork
| * | Checkin of fix for CGNS bugmainzer2017-04-068-26/+298
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | (https://jira.hdfgroup.org/browse/HDFFV-10055). Briefly, in H5C_collective_write() in H5Cmpio.c, the metadata cache attempts to perform a collective write of metadata cache entries. This worked fine as long as all processes had at least one entry to write. However, when the process has no entries, the function tries to participate in the collective write by calling MPI_File_set_view(), MPI_File_write_all() and then MPI_File_set_view() again, to match the calls in H5FD_mpio_write(). After pull request 183, the CGNS test benchmark_hdf5 started failing. On investigation, I determined that the failure occurred in the first call to MPI_File_set_view() in the "no data to write" path through H5C_collective_write(). Note that pull request 183 did not create the problem, it only exposed it. The bug can be observed after pull request 182 if one executes the CGNS progam src/ptests/benchmark_hdf5 with 90 processes. The problem appears to have been that the calls to MPI_File_set_view() in H5C_collective_write() and H5FD_mpio_write() were using different values for the info parameter. I patched the problem by adding a MPI specific VFD call allowing me to get the MPI_Info used in H5FD_mpio_write() for use in MPI_File_set_view() calls in H5C_collective_write(). Tested serial & parallel, debug & production on Jelly.
* | | Merge pull request #396 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2017-04-071-301/+368
|\ \ \ | |_|/ |/| | | | | | | | | | | | | | develop * commit 'b3ff39585c3f8e6e9096fc84f02dd049f0d3ae36': Modify test/fheap.c to run with various file space strategies and/or page buffering Modify test/fheap.c to run with different combinations of file space strategies and page buffering only when ExpressMode is 0 (HDF5TestExpress is 0). Tested on ostrich, platypus, mayll, emu, osx1010test, quail, kite, kituo.
| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2017-04-073-6/+17
| |\ \ | |/ / |/| | | | | | | | | | | | | | * commit '4a05d27c6fcef81612e005b6f6429ab362247492': HDFFV-10143 add missing javadoc param Add missing test status Fix CMake regex commands
* | | Merge pull request #402 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-04-062-0/+11
|\ \ \ | | | | | | | | | | | | | | | | | | | | * commit '4b11c4fd518026667944b50b4cd4cb41bec7e25a': HDFFV-10143 add missing javadoc param Add missing test status
| * | | HDFFV-10143 add missing javadoc paramAllen Byrne2017-04-061-0/+10
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