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* [svn-r29842] Description:Quincey Koziol2016-04-3013-61/+98
| | | | | | | | | Bring [appropriate portions of] r29811, 29813, 29826, 29830, 29831 from revise_chunks branch to the trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29815] Description:Quincey Koziol2016-04-263-6/+6
| | | | | | | | Change 'value' pointer to H5Pset() from 'void *' to 'const void *'. Tested on: MacOSX/64 10.11.4 (amazon) w/serial (h5committest forthcoming)
* [svn-r29803] Purpose: Code improvementBinh-Minh Ribler2016-04-263-14/+30
| | | | | | | | | | | | | | Description: The constructor FL_PacketTable added in 1.10.0 did not have good prototype; it didn't allow the property list to be default. Marked it deprecated and added this one: FL_PacketTable(hid_t fileID, const char* name, hid_t dtypeID, hsize_t chunkSize = 0, hid_t plistID = H5P_DEFAULT) Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r29800] Purpose: Fix memory leak - HDFFV-9700Binh-Minh Ribler2016-04-251-4/+1
| | | | | | | | | Description: Applied user's patch to fix memory leak. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r29796] Purpose: Fix warnings HDFFV-8615Binh-Minh Ribler2016-04-251-3/+14
| | | | | | | | | | | | Description: The "warning: deprecated conversion from string constant to âchar*â [-Wwrite-strings]" was already removed by adding const to char* parameter in the FL_PacketTable. This change is to remove the use of literal strings in code for maintainability. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r29793] Removed -Waggregate-return from gnu C++ flags.Dana Robinson2016-04-251-1/+1
| | | | | | | | | This flag generates a large number of warnings and is considered obsolete since its primary purpose seems to have been to support ancient compilers that could not return an aggregate. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 Autotools serial w/ C++
* [svn-r29786] Purpose: Add new wrapperBinh-Minh Ribler2016-04-254-21/+155
| | | | | | | | | Description: Added wrapper for H5Tset_nbit: void DSetCreatPropList::setNbit() const. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r29782] Purpose: Code improvementBinh-Minh Ribler2016-04-245-111/+181
| | | | | | | | | | | | | Description: - Removed ArrayType::rank and ArrayType::dimensions and modified the methods ArrayType::getArrayNDims and ArrayType::getArrayDims to always call the C functions to get the rank and dimensions. - Overloaded ArrayType::getArrayNDims and ArrayType::getArrayDims to provide const version and marked the non-const version deprecated. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r29779] Description:Quincey Koziol2016-04-2412-4/+453
| | | | | | | | Bring over some of the tool testing for the new chunk indices. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29776] Description:Quincey Koziol2016-04-247-3/+414
| | | | | | | | Bring "file pointer patching" code & test from revise_chunks to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29775] Description:Quincey Koziol2016-04-241-0/+4
| | | | | | | | Another change for 'none' file pointers. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29770] Description:Quincey Koziol2016-04-2311-16/+579
| | | | | | | | Bring 'none' chunk index from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd) (h5committest forthcoming)
* [svn-r29766] Description:Binh-Minh Ribler2016-04-223-9/+11
| | | | | | | - Changed object in catch statements to reference (left over from previous) Platforms tested: Linux/32 2.6 (jam) (very minor)
* [svn-r29759] Purpose: Code improvementsBinh-Minh Ribler2016-04-2230-222/+256
| | | | | | | | | | | | Description: - Changed object in catch statements to reference - Replaced old-style casts or reinterpret_cast with static_cast - Removed unused name H5Library::need_cleanup - Removed Exception::printError from documentation Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r29755] test/ohdr.c apply fix for HDFFV-9713 to not open test file ↵Larry Knox2016-04-202-1/+13
| | | | | | | | in source with write permission. config/linux-gnulibc1 reapply filx for HDFFV-9439 which was partially removed, probably by merge from revise_chunks branch. Tested with h5committest.new on kituo, ostrich, osx1010dev and platypus.
* [svn-r29745] HDFFV-9767Scot Breitenfeld2016-04-191-5/+5
| | | | | | h5perf output; should be MB not MBs FIX: changed output text from MBs to MB and KBs to KB
* [svn-r29743] Description:Quincey Koziol2016-04-191-0/+5
| | | | | | | | Close another FAPL in the test_missing_chunk() routine. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd) (h5committest forthcoming)
* [svn-r29742] Description:Quincey Koziol2016-04-191-0/+1
| | | | | | | Add missing source file for single chunk index. Tested on: Windows (via daily testing
* [svn-r29738] Description:Quincey Koziol2016-04-1913-33/+909
| | | | | | | | Bring "single" chunk index from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd) (h5committest forthcoming)
* [svn-r29736] Description:Quincey Koziol2016-04-191-0/+5
| | | | | | | | Close FAPL that was leaked in zero_dims test. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production, including check-vfd (h5committest forthcoming)
* [svn-r29730] Description:Quincey Koziol2016-04-181-0/+2
| | | | | | | Add missing pre-generated files to list of test files to copy. Tested on: Windows (Reported by Allen)
* [svn-r29722] Description:Quincey Koziol2016-04-178-141/+1985
| | | | | | | | Bring over more dataset tests from the revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29718] Description:Quincey Koziol2016-04-161-3/+938
| | | | | | | | Bring changes from revise_chunks branch to trunk Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel, and production (h5committest forthcoming)
* [svn-r29717] Description:Quincey Koziol2016-04-164-6/+416
| | | | | | | | | | Correct chunk index computation for earrays and farrays, particularly when copying datasets with H5Ocopy() and other operations (like H5Dget_storage_size) that require iterating over all chunks. Tested on: MacOSX/64 10.11.4 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29716] Description:Quincey Koziol2016-04-161-2/+4
| | | | | | | | Add missing testfiles from dsets.c to the 'clean' target. Tested on: MacOSX/64 10.11.4 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29715] Description:Quincey Koziol2016-04-161-11/+15
| | | | | | | | | Clean up coding to increment/decrement underlying FAPL for multi/split VFDs, to avoid copying property lists as much. Tested on: MacOSX/64 10.11.4 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29714] Description:Quincey Koziol2016-04-161-5/+1
| | | | | | | | | Switch to use internal DXPL ID, to align with recent changes within the library. Tested on: MacOSX/64 10.11.4 (amazon) w/serial & parallel (Too minor to require h5committest)
* [svn-r29712] Description:Quincey Koziol2016-04-162-2/+2
| | | | | | | | Minor code cleanups to address typos & warnings. Tested on: MaOSX/64 10.11.4 (amazon) w/serial & parallel (Too minor to require h5committest)
* [svn-r29710] Purpose: Code improvementsBinh-Minh Ribler2016-04-152-84/+84
| | | | | | | | | | | Description: - Replaced "goto out" and "out:" with "goto error" and "error:" to indicate the failure situations. - Replaced old-style casts with static_cast to remove warnings. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r29698] Switched true and false to TRUE and FALSE in a function inDana Robinson2016-04-141-2/+2
| | | | | | | test/external.c. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial (external test only)
* [svn-r29696] Applied fix for HDFFV-9439 to mpicc config as well as mpif90 in ↵Larry Knox2016-04-141-1/+1
| | | | | | config/linux-gnulibc1. Tested with h5committest.new on kituo, ostrich, osx1010dev and platypus.
* [svn-r29683] HDFFV-1956: h5diff will warn if a dataset is virtual instead of ↵Allen Byrne2016-04-112-20/+0
| | | | | | | failing. h5diff does not consider the layout type when comparing datasets. SKIP h5repack VDS tests until h5repack is fixed. remove h5repack fix ddl files needed when h5repack VDS fix is implemented.
* [svn-r29681] HDFFV-1956: h5diff will warn if a dataset is virtual instead of ↵Allen Byrne2016-04-111-4/+6
| | | | | | | failing. h5diff does not consider the layout type when comparing datasets. SKIP h5repack VDS tests until h5repack is fixed. Additional tests to be skipped
* [svn-r29680] HDFFV-1956: h5diff will warn if a dataset is virtual instead of ↵Allen Byrne2016-04-115-44/+203
| | | | | | failing. h5diff does not consider the layout type when comparing datasets. SKIP h5repack VDS tests until h5repack is fixed.
* [svn-r29678] Revert r29672 changes to h5diff.Larry Knox2016-04-093-35/+10
| | | | Tested h5committest.new
* [svn-r29673] Fix typo of var nameAllen Byrne2016-04-081-1/+1
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* [svn-r29672] HDFFV-1956: h5diff will warn if a dataset is virtual instead of ↵Allen Byrne2016-04-083-10/+35
| | | | failing. h5diff does not consider the layout type when comparing datasets.
* [svn-r29668] Added H5Dfarray.c to CMake.Dana Robinson2016-04-081-0/+1
| | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 CMake serial
* [svn-r29665] Added new chunk index types to h5debug.Dana Robinson2016-04-071-2/+50
| | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 Autotools serial
* [svn-r29659] Added fixed array chunk indexing from revise_chunks.Dana Robinson2016-04-0714-22/+2189
| | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 Autotools serial w/ Java, Fortran, & C++
* [svn-r29655] Added H5D_CHUNK_BTREE to the deprecated section of H5Dpublic.h.Dana Robinson2016-04-071-0/+1
| | | | Tested on: 64-bit Ubuntu 15.10 (build only, not used in existing code)
* [svn-r29653] fixed A variable that is specified as an argument to the ↵Scot Breitenfeld2016-04-071-1/+1
| | | | intrinsic procedure C_LOC must either have type and type parameters that are interoperable with a C type, or be a nonpolymorphic, scalar variable with no length type parameters.
* [svn-r29649] changed indentation format, updated commentsScot Breitenfeld2016-04-061-17/+12
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* [svn-r29648] FIX: HDFFV-8486 Scot Breitenfeld2016-04-066-122/+621
| | | | | | | | h5tbmake_table_f is missing the fill_data parameter (which is in the C counterpart) ADDED NEW API: h5tbread_table_f Tested: platypus, ostrich
* [svn-r29646] FIX: HDFFV-9522 Scot Breitenfeld2016-04-061-5/+71
| | | | | | Add support for variable length datatypes in the High Level H5LT Fortran APIs Tested: platypus (gnu)
* [svn-r29644] Description:Quincey Koziol2016-04-061-1/+1
| | | | | | | | Finish correcting initializer for chunked layouts. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (to minor to require h5committest)
* [svn-r29640] Description:Quincey Koziol2016-04-051-1/+1
| | | | | | | | Add missing inializer from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial (Too minor to require h5committest)
* [svn-r29638] Added new chunk index types to trace code.Dana Robinson2016-04-051-0/+34
| | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial
* [svn-r29635] Description:Quincey Koziol2016-04-0519-21/+3773
| | | | | | | | | Bring support for earray and v2 B-trees from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29632] Description:Quincey Koziol2016-04-051-6/+10
| | | | | | | | Align w/revise_chunks branch Tested on: MacOSX/64 10.11.4 (amazon) w/parallel (h5committest forthcoming)
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