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* [svn-r12885] Refactored the H5FD_direct_open and H5FD_direct_write. The ↵Raymond Lu2006-11-091-79/+23
| | | | | | | condition for H5_HAVE_DIRECT_ALIGN not defined simply repeated the code above. Merged this part into the code above. No other significant change.
* [svn-r12884] Pedro Vicente Nunes2006-11-084-967/+369
| | | | | | | | | | | | h5repack support for H5Ocopy in the copy of objects. The old method for recreating references was dropped (references recreated in a second traversal of the file) The logic for using H5Ocopy or not is if the input DCPL has filters or non default layout OR these are requested by the user THEN use the old h5repack read / write ELSE use H5Ocopy
* [svn-r12883] Pedro Vicente Nunes2006-11-086-10/+40
| | | | | | h5dump bug 701. Symptom: The creation of a hardlink pointing to the root group "/" causes h5dump to display it as a link pointing to itself. Cure: the root group was not being inserted in the table that keeps track of object names and links. Added a test for this in the test generation program, the creation of a hardlink to the root
* [svn-r12882] Changed bin/reconfigure to work on kagiso as well as on AFS ↵James Laird2006-11-0852-14116/+20497
| | | | | | | | Linux machines. Updated to the latest versions of autotools. Tested on kagiso, heping, and juniper. Let me know if you have any problems.
* [svn-r12881] updated the batch file a little to reflect the testing position ↵MuQun Yang2006-11-081-10/+6
| | | | of ref.
* [svn-r12880] Purpose: Bug fixLeon Arber2006-11-081-27/+28
| | | | | | | Description: Fix some memory-related bugs in the data transform code Tested: kagiso w/ valgrind 3.2.1
* [svn-r12879] Purpose: Bug fixLeon Arber2006-11-082-13/+22
| | | | | | | Description: Fix a few memory-related bugs in the data transform code. Tested: kagiso (for real this time) w/ valgrind 3.2.1
* [svn-r12878] Description:Quincey Koziol2006-11-079-126/+360
| | | | | | | | Flesh out support for looking up link info by index, some cases for using dense storage are working now. Tested on: Linux/32 2.6 (chicago)
* [svn-r12877] Description:Quincey Koziol2006-11-0713-129/+130
| | | | | | | Clean up more compiler warnings. Tested on: Linux/64 2.6 (chicago2)
* [svn-r12876] Description:Quincey Koziol2006-11-071-4/+17
| | | | | | | | Make code that retrieves names for references thrash memory less by keeping track of the current buffer size and only re-allocating it when necessary. Tested on: Linux/64 2.6 (chicago2)
* [svn-r12875] Description:Quincey Koziol2006-11-076-16/+35
| | | | | | | | | | Fix retrieving name for references to root group. Also, move 'ref' test earlier in testing, right after 'getname' test Tested on: Linux/64 2.6 (chicago2)
* [svn-r12874] MuQun Yang2006-11-072-0/+30
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* [svn-r12873] Decription:Quincey Koziol2006-11-074-29/+73
| | | | | | | | Add support for reverse index lookup to v2 B-trees (needed for reverse index lookup of links in groups) Tested on: Linux/64 2.6 (chicago2)
* [svn-r12872] Description:Quincey Koziol2006-11-0711-148/+704
| | | | | | | | | | | | Implement basic framework for H5Lget_info_by_idx and get it working for creation order indices on compact groups. Clean up code a bit. Close resource link in user-defined link traversal. Tested on: Linux/32 2.6 (chicago)
* [svn-r12871] Description:Quincey Koziol2006-11-072-0/+8
| | | | | | | Clean up a couple of warnings... Tested on: Linux/64 2.6 (chicago2)
* [svn-r12870] Add a new macro H5_HAVE_DIRECT_ALIGN in configure.in. Some ↵Raymond Lu2006-11-066-7/+215
| | | | | | | systems like copper and sleipnir doesn't require alignment for Direct I/O. If this's true, write or read data just like sec2 does.
* [svn-r12869] Description:Quincey Koziol2006-11-0617-742/+1054
| | | | | | | | Rename new H5Gcopy() routine to H5Ocopy() as discussed in last Friday's design discussion. Tested on: Linux/32 2.6 (chicago)
* [svn-r12868] Description:Quincey Koziol2006-11-062-5/+5
| | | | | | | | Make API routines that don't initialize the library more consistent, to help with future internal library changes. Tested on: Linux/64 2.6 (chicago2)
* [svn-r12867] Description:Quincey Koziol2006-11-063-217/+401
| | | | | | | Get rid of H5L API calls from within deprecated H5G API calls. Tested on: Linux/32 2.6 (chicago)
* [svn-r12866] Description:Quincey Koziol2006-11-0610-224/+101
| | | | | | | Clean up initialization of H5F & H5L APIs. Tested on: Linux/64 2.6 (chicago2)
* [svn-r12865] Description:Quincey Koziol2006-11-0610-59/+67
| | | | | | | Change name of H5Lunlink to H5Ldelete, per our design meeting last Friday. Tested on: Linux/32 2.6 (chicago)
* [svn-r12864] Description:Quincey Koziol2006-11-0611-75/+84
| | | | | | | | Changed H5Lget_linkval() to H5Lget_val(), per our design discussion last Friday afternoon. Tested on: Linux/32 2.6 (chicago)
* [svn-r12863] Description:Elena Pourmal2006-11-041-1/+1
| | | | | | | | Daily tests reported failures in HL when Absoft compiler was used. The failure was due to a typo in the H5LTf90proto.h file; fixed Platfroms tested: heping with gcc and Absoft f95
* [svn-r12862] Description:Elena Pourmal2006-11-041-2/+4
| | | | | | | Daily tests reported broken MANIFEST file; fixed. Platfroms tested: heping with bin/chkmanifest
* [svn-r12861] Description:Quincey Koziol2006-11-041-156/+154
| | | | | | | Add actual error checking and set return value if a test fails. Tested on: FreeBSD/32 4.11 (sleipnir)
* [svn-r12860] Description:Quincey Koziol2006-11-043-48/+48
| | | | | | | | Update H5Iget_name() tests to reflect that the name of the object for an ID can be found in many more situations now. Tested on: FreeBSD/32 4.11 (sleipnir)
* [svn-r12859] Description:Quincey Koziol2006-11-041-10/+14
| | | | | | | | Fix to handle finding the correct path to an object in a mounted file hierarchy. Tested on: FreeBSD/32 4.11 (sleipnir)
* [svn-r12858] Description:Quincey Koziol2006-11-044-275/+131
| | | | | | | | Clean up code to build name for ID with no name tracked - get rid of global variable, unused routines, etc. Tested on: FreeBSD/32 4.11 (sleipnir)
* [svn-r12857] Description:Elena Pourmal2006-11-035-254/+1498
| | | | | | | | Updated code to eliminate compilation warnings and to add support for the latest g95. Platforms tested: g95 on kagiso, heping, and mir the first lite (making and reading 1-d datasets) test fails on mir
* [svn-r12856] On windows file_handle has been changed to vfd. This check-in ↵MuQun Yang2006-11-038-241/+528
| | | | | | | changes the feature. Add project files for ref test. Update hdf5test.bat that includes btree2 test.
* [svn-r12855] Description:Quincey Koziol2006-11-031-67/+75
| | | | | | | Further code cleanups to bring into better alignement w/rest of library. Tested on: FreeBSD/32 4.11 (sleipnir)
* [svn-r12854] Description:Quincey Koziol2006-11-031-16/+19
| | | | | | | Clean up some more function name problems and other compiler warnings. Tested on: FreeBSD/32 4.11 (sleipnir)
* [svn-r12853] Description:Quincey Koziol2006-11-031-11/+12
| | | | | | | Correct name of routine in FUNC_ENTER... macro. Tested on: None - just eyeballed, very trivial..
* [svn-r12852] Add the declaration of H5I_get_file_id to avoid a bad windows ↵MuQun Yang2006-11-031-0/+1
| | | | warning.
* [svn-r12851] Purpose: Update MANIFEST with new reference test.Leon Arber2006-11-021-0/+1
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* [svn-r12850] Purpose: FeatureLeon Arber2006-11-023-8/+307
| | | | | | | Description: Test the ability to determine a path name given an object reference Tested: kagiso, sol
* [svn-r12849] Purpose: FeatureLeon Arber2006-11-022-4/+359
| | | | | | | | Description: Add ability for H5Iget_name to figure out the path name given an object reference. Tested: kagiso, sol
* [svn-r12848] Description:Quincey Koziol2006-11-025-157/+263
| | | | | | | | | | | | | | Change H5Pset_elink_prefix to be more similar to rest of library and make a copy of the string passed in. Change H5Pget_elink_prefix to be link rest of library routines that query a string. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe & debugging turned on Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/build-all & 1.6 compat enabled AIX/32 5.x (copper) w/FORTRAN & parallel
* [svn-r12847] Corrected the comment describing H5Odecr_refcount's return value.James Laird2006-11-021-1/+1
| | | | Change only in comment block; no testing necessary.
* [svn-r12846] Description:Quincey Koziol2006-11-026-15/+53
| | | | | | | | | | Further minor tweaking of property list class initialization macros, etc. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe & debugging turned on Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/build-all & 1.6 compat enabled AIX/32 5.x (copper) w/FORTRAN & parallel
* [svn-r12845] Description:Quincey Koziol2006-11-025-258/+258
| | | | | | | | | | | | | Finish refactoring job on the library's property list class initialization code, so that the library determines the parent class dependencies at run-time, eliminating the need for developers to initialize the classes in a particular order. Also eliminates some more redundant code... Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe & debugging turned on Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/build-all & 1.6 compat enabled AIX/32 5.x (copper) w/FORTRAN & parallel
* [svn-r12844] Description:Quincey Koziol2006-11-024-104/+81
| | | | | | | Fix parallel build failure for property list class initialization refactor. Tested on: AIX (copper) w/parallel
* [svn-r12843] Update windows library projects to reflect Quincey' recent changes.MuQun Yang2006-11-022-22/+52
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* [svn-r12842] Description:Quincey Koziol2006-11-0258-2306/+2995
| | | | | | | | | | | | | | | | Refactor generic property list initialization code to put property list specific routines in property list modules, instead of scattered to the four winds. Also, introduce property list class initialization objects, to make adding new property list classes in the library easier. Fix daily test failure by using H5Pget_elink_prefix() API routine instead of looking at the "raw" generic property list information. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/C++ & FORTRAN Linux/64 2.4 (mir) w/build-all & 1.6 compat
* [svn-r12841] Bug fix. The mechanism to handle interupted system call or ↵Raymond Lu2006-11-012-89/+51
| | | | | | partial I/O for reading data may not work well for Direct I/O because of the requirement for data alignment. Took it out.
* [svn-r12840] Frank Baker2006-11-011-1/+1
| | | | | | | | | | | Description: Correct input file that, via doxygen, creates the C++ reference manual paragraph that pointed to a now-removed release_docs/ file. Original file was release_docs/INSTALL_Windows_withcpp.txt; current file is release_docs/INSTALL_Windows.txt. Closes Bugzilla entry 719. Tested: Trivial change; not tested.
* [svn-r12839] Cleaned up a resource leak when Packet Tables are opened.James Laird2006-11-011-0/+3
| | | | | Tested on juniper (will test on kagiso after check-in to make sure that nothing's broken).
* [svn-r12838] Description:Elena Pourmal2006-11-011-24/+110
| | | | | | | | | Added a framework to display information about a particular object. This option (-O object_name) is not available to the users yet. Currently only name of an object (or objects) is displayed. Platforms tested: sol, kagiso and copper.
* [svn-r12836] Catch up with h5diff tests.MuQun Yang2006-10-312-2/+5
| | | | Catch up with h5repacktst tests.
* [svn-r12835] Description:Quincey Koziol2006-10-3113-165/+180
| | | | | | | | | Change H5Lget_linkinfo() to H5Lget_info() to better align with coming API changes. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
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