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* [svn-r22277] Purpose:Jonathan Kim2012-04-1111-23/+235
| | | | | | | | | | | | Fix for HDFFV-7993 - h5repack fails with error "chunk size must be <= maximum dimension size for fixed-sized dimensions" Description: Fixed a failure when change the chunk size of a specified chunked dataset with unlimited max dims. Also took care of converting to contiguous and compact from the dataset. Test cases were added and tagged with jira#. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22275] Clear up examples vs applications instances and add minimum file.inactive/H5OcompareAllen Byrne2012-04-111-14/+35
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* [svn-r22263] Use correct index for inserting null terminatorAllen Byrne2012-04-091-9/+9
| | | | Tested: windows under debug
* [svn-r22257] Snapshot version 1.9 release 113HDF Tester2012-04-0814-29/+29
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* [svn-r22247] Added new files and tests to CMakeLists.txtAllen Byrne2012-04-043-7/+67
| | | | Tested: local linux
* [svn-r22246] Changed code comments for h5ltpath_valid_fScot Breitenfeld2012-04-041-1/+1
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* [svn-r22244] Description:Quincey Koziol2012-04-031-3/+3
| | | | | | | | | | | | | | | | | | | | Correct use of deprecated API routines in test routine. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/C++ & FORTRAN, in production mode Mac OS X/32 10.6.8 (amazon) in debug mode Mac OS X/32 10.6.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r22243] Updated the comments for robodoc inclusion and changed spacing ↵Scot Breitenfeld2012-04-031-69/+68
| | | | | | formatting in the source headers, cosmetic changes only.
* [svn-r22242] Issue 7934 - The data sieve buffer size was for all the ↵Raymond Lu2012-04-023-7/+33
| | | | | | | | | | datasets in the file. It could waste memory if any dataset size is smaller than the sieve buffer size. Now the library picks the smaller one between the dataset size and the sieve buffer size from the file access property. Tested on jam, koala, and ostrich.
* [svn-r22240] Description:Quincey Koziol2012-04-021-2/+2
| | | | Update comment about metadata block size test.
* [svn-r22238] Added comment to explain why FNAME4 is used and cautioned other ↵Albert Cheng2012-04-021-0/+2
| | | | | | files may not work.
* [svn-r22236] Description:Quincey Koziol2012-04-021-1/+1
| | | | | | | Switch 'snprintf' -> 'HDsnprintf' Tested on: (eyeballed only, very simple)
* [svn-r22235] Purpose: Fixed bugs HDFFV-2761 & HDFFV-7852Binh-Minh Ribler2012-04-0219-185/+177
| | | | | | | | | | | | | | | | | | | | Description: - Replaced PredType::NotAtexit() with PredType::AtExit(H5CPP_EXITED); and used PredType::AtExit as a flag to detect when all predefined types have been destroyed. Then, H5close will be called to terminate the library after its being re-initiated when the PredType destructors were activated. This change removed the memory leaks shown by the user's sample program. - Added H5CPP_EXITED for PredType::AtExit to use as a flag - Updated some inaccurate comments - Removed stream functions from FileAccPropList - Replaced H5_VMS with appropriate macro in H5IdComponent.cpp - Corrected many URLs (hdfgroup vs. ncsa) in comments - Replaced std::string with H5std_string in comments Platforms tested: Linux/32 2.6 (jam) Linux/64 2.6 (amani) SunOS 5.10 (linew)
* [svn-r22233] Description:Quincey Koziol2012-04-0113-165/+616
| | | | | | | | | | | | | | | | | Correct several errors in fractal heap code: root indirect block was getting pinned/protected more than once, "single" free space sections weren't getting "re-parented" correctly when the heap transitioned between having a root indirect block and a root direct block, and several related issues. Also cleaned up some warnings in library/tests. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Mac OSX/64 10.7.3 (amazon) w/debug
* [svn-r22229] Description:Quincey Koziol2012-04-014-22/+28
| | | | | | | | | | | | | Add 'H5O_mcdt_search_cb_t' to bin/trace script and re-run the bin/reconfigure script. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode
* [svn-r22224] Description:Quincey Koziol2012-04-012-14/+19
| | | | | | | | | Clean up a few warnings and use constant values for free-space parameters for the metadata block size test. Tested on: Linux/64 2.6.18 (koala) w/production & szip (h5committested also)
* [svn-r22222] Description:Quincey Koziol2012-04-011-1/+75
| | | | | | | Update GCC compiler flags for new 4.7.0 release. Tested on: Mac OSX/64 10.7.3 (amazon) w/gcc 4.7.0
* [svn-r22221] Description:Quincey Koziol2012-04-011-4/+4
| | | | | | | | Small code cleanup while tracking down h5repack issue. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest coming up)
* [svn-r22220] Feature: HDFFV-7981Albert Cheng2012-03-311-0/+20
| | | | | | Added test to verify h5repack --metadata option produces bigger size file. Tested: h5committest (koala, jam, ostrich).
* [svn-r22219] Description:Quincey Koziol2012-03-3143-331/+4260
| | | | | | | | Merge "file image" changes from feature branch back to trunk. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest upcoming)
* [svn-r22214] Feature: HDFFV-7981Albert Cheng2012-03-301-6/+54
| | | | | | Added test to verify h5repack --metadata option produces bigger size file. Tested: h5committest (koala, jam, ostrich).
* [svn-r22211] STDIO VFD fixes (HDFFV-7917). Mainly Windows correctness ↵Dana Robinson2012-03-301-328/+343
| | | | | | | | | | | issues (propagated from the SEC2 VFD and the old Windows VFD) and issues where large files are accessed. Tested on: 64-bit Mac OS-X 64-bit Windows 7 jam koala ostrich
* [svn-r22202] Add extra search termAllen Byrne2012-03-291-2/+2
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* [svn-r22199] Correct typoAllen Byrne2012-03-291-5/+5
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* [svn-r22198] Update MINGW configuration (MinGW is Windows except for some ↵Allen Byrne2012-03-292-19/+19
| | | | issues)
* [svn-r22195] Add PASS_REGULAR_EXPRESSION property to fortran tests to verify ↵Allen Byrne2012-03-291-0/+3
| | | | | | 0 errors. Some platforms do not return proper value in CMake ADD_TEST and results in a false positive. Tested: local linux
* [svn-r22190] Update MINGW configurationAllen Byrne2012-03-291-8/+8
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* [svn-r22185] Update MINGW configuration to match HDFMacros settings for ↵Allen Byrne2012-03-291-6/+6
| | | | shared library
* [svn-r22183] Correct typoAllen Byrne2012-03-291-2/+2
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* [svn-r22182] Update MINGW configurationAllen Byrne2012-03-291-21/+42
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* [svn-r22181] Description:Quincey Koziol2012-03-291-2/+2
| | | | | | | Correct typo in test file name. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug
* [svn-r22180] Description:Quincey Koziol2012-03-296-120/+110
| | | | | | | | | Add new "metadata block size" command line option ('-M <x>' or '--metadata_block_size=<x>') for h5repack. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug) (h5committest upcoming)
* [svn-r22178] Fixed a bad merge where truncate was called twice in the core VFD.Dana Robinson2012-03-281-12/+2
| | | | | Minor change: tested on jam, koala, ostrich and 64-bit Windows 7 with the core VFD set.
* [svn-r22176] Purpose:Jonathan Kim2012-03-2820-291/+313
| | | | | | | | | | | | Fix for HDFFV-7644 GMQS: h5diff - incorrect behaviors when comparing HDF5 files with different type of objects (dataset, group, type) as common objects Description: Fixed failure for comparing same named object with different object types in comparing groups. (common object comparison) Prior to the fix, h5diff resulted in error. After the fix, h5diff detects such case as non-comparable and display messages accordingly. Test cases were added and tagged with jira#. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22175] MinGW compile issues fixed.Allen Byrne2012-03-284-7/+24
| | | | | | Reviewed Tested: windows (big test using stdio ony fails - this will be filed for further investigation)
* [svn-r22173] Purpose: Fix HDFFV-7762Neil Fortner2012-03-284-3/+185
| | | | | | | | | | | | | | | | Description: When copying an object with attribute creation order tracked, the attribute creation order was not copied correctly to the destination file, causing an error if the creation order was also indexed (due to attempting to insert duplicate keys) or incorrect creation orders otherwise. Fixed to copy the creation order correctly. Also fixed the attribute character set not being copied, and fixed an issue where an attribute opened with H5Aopen (or similar, but not by_idx), from an object using the latest format but without creation order being tracked, would always report the creation order as 0 (and marked as valid). Tested: jam, koala, ostrich (h5committest), durandal
* [svn-r22171] Description:Quincey Koziol2012-03-2828-142/+4621
| | | | | | | | | Bring "merge committed datatypes during H5Ocopy" feature from branch to trunk. (Also has some minor bugfixes with it) Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest coming up)
* [svn-r22170] Removed extraneous svn executable properties from ↵Dana Robinson2012-03-2879-0/+0
| | | | non-executable files.
* [svn-r22169] Description:Quincey Koziol2012-03-281-144/+137
| | | | | | | | Clean up formatting and whitespace. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (too minor to require h5committest)
* [svn-r22166] Reduce warnings from unneeded windows incude file.Allen Byrne2012-03-282-1/+4
| | | | | | Reviewed HDF5-68 Tested: windows
* [svn-r22164] Fixed a bug in H5Ocopy(): When copying an opened object, call ↵Vailin Choi2012-03-2810-12/+408
| | | | | | | the object's flush class action to ensure that cached data is flushed so that H5Ocopy will get the correct data. (HDFFV-7853)
* [svn-r22163] Added tests for optional parameters in h5ocopy_f.Scot Breitenfeld2012-03-281-62/+143
| | | | | | | Cleaned up comments by removing "C" notation comments Tested: jam (gnu, intel) koala (intel)
* [svn-r22161] Added a message when the time-consuming test is skipped due to ↵Dana Robinson2012-03-271-0/+2
| | | | | | a lack of sparse file support. Minor change: tested on 64-bit Windows 7
* [svn-r22154] Fixed comments for h5pcreate_f; added missing property classes.Scot Breitenfeld2012-03-271-15/+20
| | | | | | Tested: N/A
* [svn-r22152] Added a "skipped" message to the istore sparse test function.Dana Robinson2012-03-261-9/+16
| | | | | Minor change: tested on jam (test not skipped) and Mac OS-X Lion (test skipped due to HFS not supporting sparse files).
* [svn-r22149] Purpose:Mike McGreevy2012-03-263-35/+37
| | | | | | | | | | | | | | | | | | | | | | | | | HDFFV-944: Fortran test problem with HDF5 182, intel 11.0, open-mpi-1.2.8 Description: Moved libtool post-processing 'ed' snippet that replaces wl="" with wl="-Wl," when intel compilers are used to the end of the configure script, after libtool is actually generated. (I imagine that at some point in time during a libtool version upgrade the libtool script ceased being generated immediately after the libtool initialization macro and is generated at the end of configure with all other files). Additionally, added a leading 'g' to the replacement invocation to change all instances of wl="" to wl="-Wl," instead of just the first that it comes across. (There's a separate one for each compiler used (C, Fortran, C++)). Tested: Reproduced the reported make failure and tested resolution on NCSA's Forge with OpenMPI built with Intel 12.0.4. Also, h5committested.
* [svn-r22147] Purpose:Mike McGreevy2012-03-261-0/+3
| | | | | | Update RELEASE.txt for HDFFV-398 Tested: None needed, doc only.
* [svn-r22146] Purpose: ↵Mike McGreevy2012-03-263-3/+3
| | | | | | | | | | | | | | | | | | HDFFV-398: h5cc doesn't work with automake Description: Fixed compiler wrapper scripts to correctly detect compilation when -MT preprocessor flag is provided, fixing a bug in which its *.o argument was added to link_objs but not compile_args. This previously broke usage of h5cc as the provided compiler in configure scripts (like with h5edit) as automake may supply the -MT option to the compiler via the makefiles. Tested: Tested using h5edit and h5committested.
* [svn-r22144] Added DLL h5ocopy_f entry for windows.Scot Breitenfeld2012-03-262-0/+2
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* [svn-r22143] Description: added info about h5ocopy_f and ↵Scot Breitenfeld2012-03-261-1/+10
| | | | | | h5ltget_attribute_string_f
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