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* [svn-r19566] Maintenance: Added -O3 to be used with the C Intel v 11 ↵Elena Pourmal2010-10-083-7/+29
| | | | | | | | | compilers; set default to -O for all unknown versions of the C Intel compilers. Modified apple config file to display Intel compiler information. Updated RELEASE.txt notes accordingly. Platfroms tested: jam, amani and dubna (Mac 64-bit) with Intel C, Fortran and C++ compilers.
* [svn-r19548] Remove reference files from clearall commandAllen Byrne2010-10-081-3/+0
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* [svn-r19544] Purpose:Mike McGreevy2010-10-081-6/+9
| | | | | | | | | | | | Patch for metadata accumulator bug Description: Linew failed one of the randomly seeded fheap tests due to a corner case bug in the metadata accumulator code. This patch fixes the corner case. Tested: used same random seed in fheap tests to reproduce and verify on linew; plus full make check on jam. unit tests for accumulator code coming soon.
* [svn-r19541] Description:Quincey Koziol2010-10-071-1/+1
| | | | | | | | Correct assert statement to acount for pinned entries. Tested: Linux/64 2.6 (chicago) (too peculiar to Chicago setup h5committest)
* [svn-r19536] Cleanup formattingAllen Byrne2010-10-073-40/+38
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* [svn-r19534] Add using-memchecker optionAllen Byrne2010-10-071-0/+8
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* [svn-r19532] Added line to config/examples.am to remove execute permission ↵Larry Knox2010-10-078-8/+15
| | | | | | | | from example source files tha t are installed in .../share/hdf5_examples/. This will address bugzilla #2025. Tested with h5committest on amani, heiwa, and jam.
* [svn-r19527] Add clear generated objects commands to test blocks.Allen Byrne2010-10-0616-69/+1107
| | | | | | Add configurefile command to copy CTestCustom to build folder. Tested: local linux
* [svn-r19525] Updated tested Windows platformsAllen Byrne2010-10-061-7/+14
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* [svn-r19523] I added another test case - disabling chunk cache. H5Dwrite ↵Raymond Lu2010-10-051-31/+58
| | | | | | | | will fail instead of H5Dclose when the chunk cache is disabled and the mandatory filter fails. Tested on jam - simple change.
* [svn-r19520] Move 'int nerrors = 0' declaration out of '#ifdef' block to ↵Allen Byrne2010-10-051-1/+1
| | | | match return.
* [svn-r19512] Snapshot version 1.9 release 75HDF Tester2010-10-0514-29/+29
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* [svn-r19509] Improve CMake support for CYGWIN.Allen Byrne2010-10-0414-154/+164
| | | | | | Correct script comment in testh5diff.sh Tested: Windows Cygwin
* [svn-r19506] Bring changes from revisions 19408, 19421, and 19442 from ↵Larry Knox2010-10-0460-263/+857
| | | | | | branches/hdf5_1_8 to trunk. These revisions reorganize the compile scripts using h5cc.in, h5fc.in, and h5c++.in, add checks for installed examples to the scripts that run them after installation, and add DESTDIR for install as needed for RPMs. Tested on amani, heiwa and jam by h5committest and with CYGWIN.
* [svn-r19498] Description:Quincey Koziol2010-10-017-662/+1087
| | | | | | | | | | | | | | | | | | | | | | | | | | | Optimize the vector-vector memcpy() routine even further, for a total of ~2x speedup. :-) Make a generic vector-vector operation routine and convert other vector-vector read & write routines to use generic routine instead of multiple copies of the basic algorithm. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.4 (amazon) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
* [svn-r19497] Change ExternalProject Dependicies guard to positive match ↵Allen Byrne2010-09-301-4/+4
| | | | | | (Windows configure error) Tested: Windows
* [svn-r19495] Correct static external project library base names.Allen Byrne2010-09-291-2/+2
| | | | Tested: windows
* [svn-r19491] Purpose:Jonathan Kim2010-09-2911-0/+264
| | | | | | | | | | Update help page for exclude-path feature. Description: Related to "1890: h5diff excluding object for file comparison via command line" checkins. (r19406) Tested: jam, amani, heiwa
* [svn-r19489] Correct dependency on extlib project when not using external ↵Allen Byrne2010-09-291-6/+8
| | | | projects.
* [svn-r19487] Add ExternalProject support for external libs - option added ↵Allen Byrne2010-09-281-18/+96
| | | | | | Defaults to NO. SVN allows downloading project from svn. Future option is to use a tar file. Tested: Windows, local Linux
* [svn-r19484] Description:Quincey Koziol2010-09-281-428/+424
| | | | | | | | Clean up formatting a bit. Tested on: Mac OS X/32 10.6.4 (amazon) w/debug (Too minor to require h5committest)
* [svn-r19482] Description:Quincey Koziol2010-09-281-49/+85
| | | | | | | | | | | | | | | | | | | | | | | Speed up hyperslab sequence generation routine some more, giving about a 10% improvement in Ger Van Diepen's LOFAR benchmark. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.4 (amazon) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
* [svn-r19481] I'm backing out my fix for bug 1707 because there're some ↵Raymond Lu2010-09-2723-342/+89
| | | | | | | | | | | unresolved issues - r19441 and 19467. Bug 1707 is that H5Eset_auto causes a seg fault when an application uses -DH5_USE_16_API with the 1.8 library to compile. I created a branch off the trunk called set_auto to continue working on the problem. Tested on jam - backing out, simple.
* [svn-r19476] Description:Quincey Koziol2010-09-234-141/+127
| | | | | | | | | | | | | | | | | | | | | | | Polish the vectorized memory <-> memory and memory <-> file I/O routines to speed them up a little bit (~10%) Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.4 (amazon) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
* [svn-r19472] Description:Quincey Koziol2010-09-234-400/+725
| | | | | | | | | | | | | | | | | | | | | | Create a new, more streamlined method of generating I/O sequences when there is only a single block defined by a hyperslab. This improves the performance of Ger Van Diepen's (LOFAR team) benchmark by about 20%. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.4 (amazon) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
* [svn-r19471] Bug fix: 1961-- AIX 6.1 --enable-share did not work.Albert Cheng2010-09-221-0/+5
| | | | | | | | | | Description: The AIX platform does not install the lib*.so for some reason but libhdf5.a acts like a shared library. Until we can find out how to fix this, patch up tetlibinfo.sh to not look for an lib*.so in AIX. (Note the test results look wierd as it says libhdf5.a passed and skipped.) Tested: NCSA BP for both enable and disable-shared.
* [svn-r19470] Bug fix: 1961-- AIX 6.1 --enable-share did not work.Albert Cheng2010-09-223-20/+81
| | | | | | | | | | | | | | | | | | Description: In an AIX 6.1 system, configure --enable-shared could not build a shared HDF5 library. The problem was because the version of config.guess was too old to recongnize AIX 6.X and also configure.in had a local fix which did not recognize AIX 6.X. Solution: 1. Mike McGreevy updated bin/config.guess to handle AIX 6.X. 2 Albert fixed configure.in to recognize AIX 6.X. Note that though HDF5 can build shared lib for AIX 6.X systems but it still could not install the proper library as in AIX 5.X systems. Also, bin/config.sub should be updated too. Tested: BP which is the AIX 6.1 system that exposed this problem.
* [svn-r19469] Bug fix for 1707 - My previous checkin wasn't complete. I left ↵Raymond Lu2010-09-222-2/+9
| | | | | | | | | out the case when the deprecated symbols were disabled. I made a different definition for H5E_auto_op_t when the deprecated symbols were disabled. Tested on jam - a simple change.
* [svn-r19461] Purpose: Fix bug 1864Neil Fortner2010-09-2120-75/+269
| | | | | | | | | | | Description: Library versions 1.6.3 and earlier contain a bug which causes them to be unable to perform certain operations on a group if that group's symbol table information is not cached in the parent group's symbol table. Versions 1.8.0 to 1.8.5 did not cache this information. Modified library to cache this information. Tested: jam, amani, heiwa (h5committest)
* [svn-r19460] Updated runTest.cmake to compare against the expected result ↵Allen Byrne2010-09-211-2/+2
| | | | code rather then just 0
* [svn-r19458] Add CMake tests for check-vfd; includes new vfdTest.cmake ↵Allen Byrne2010-09-213-0/+79
| | | | | | script and OPTION HDF5_TEST_VFD Tested: local linux
* [svn-r19457] Bug fix for 1707 - H5Eset_auto causes a seg fault when an ↵Raymond Lu2010-09-2123-89/+335
| | | | | | | | | | | | | application uses -DH5_USE_16_API with the 1.8 library to compile. The cause is from the mismatch of H5Eprint1 and H5Eprint2 set through H5Eset_auto. I changed the union in the structure H5E_auto_t. Another change is to make H5Eget_auto fail if H5Eset_auto is called to set the printing function. I'll write a document for it. Tested on heiwa, jam, and amani. The property change in configure.in, config, and Makefile.am came from the merge of the 1.8 library change.
* [svn-r19447] Fix for Windows legacy test added for 1890 h5diff exclude-pathJonathan Kim2010-09-211-2/+2
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* [svn-r19445] Update for previous checkin r19443Jonathan Kim2010-09-201-0/+1
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* [svn-r19443] Purpose:Jonathan Kim2010-09-205-10/+35
| | | | | | | | | | Fix for group comparison with exclude-path case. Use relative path. Description: Related to "1890: h5diff excluding object for file comparison via command line" checkins. (r19406) Tested: jam, amani and heiwa
* [svn-r19439] Description:Mike McGreevy2010-09-201-3/+3
| | | | | | | Update bin/chkconfigure to reflect version 2.67 of Autoconf Tested: ran bin/chkconfigure on jam
* [svn-r19437] add missing -C optionsAllen Byrne2010-09-201-1/+1
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* [svn-r19435] remove source package command - not neededAllen Byrne2010-09-201-1/+0
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* [svn-r19434] Correct use of lib, include, bin in INSTALL commands to use ↵Allen Byrne2010-09-2017-37/+50
| | | | | | proper variables. Tested: local linux
* [svn-r19431] Updated configuration section with optional command line usage. ↵Allen Byrne2010-09-201-24/+100
| | | | Also added section on CPack.
* [svn-r19430] Update to H5REPACK tests for layout info required a new ↵Allen Byrne2010-09-201-23/+161
| | | | | | function in batch file Tested: Windows
* [svn-r19427] Updates for cmake tests from the h5diff group recursive updates.Jonathan Kim2010-09-201-4/+4
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* [svn-r19425] Fix for legay Windows test for h5diff updates.Jonathan Kim2010-09-201-8/+10
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* [svn-r19418] On windows, an include bypassed the WIN32_LEAN_AND_MEAN define. ↵Allen Byrne2010-09-172-2/+2
| | | | | | Moved the define up. Moved the h5dif.h to after the h5private include Tested: Windows
* [svn-r19417] Error return value was FAIL. Should be NULL.Albert Cheng2010-09-171-1/+1
| | | | Tested: LLNL up which this was flagged.
* [svn-r19415] Fix for Cmake test.Jonathan Kim2010-09-171-22/+28
| | | | | Tested: jam
* [svn-r19412] Modified shape same tests to deal with the performance problem ↵John Mainzer2010-09-171-48/+570
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | on Abe. Problem appears to have been caused by file system contention. In the chunked dataset case, reshaping the chunks so that only one process would touch each chunk and setting the alignment equal to the default Lustre block size more or less dealt with the problem. For contiguous datasets, the problem was a bit more difficult, as re-working the test to avoid contention would have been very time consuming. Instead, I added code to time one execution of each type of shape same test, and skip additional tests of that type if the duration of the test exceeded some threshold In all cases, I set up code to turn off the above fixes if express test is 0. Tested on Abe and commit tested. On the commit test, the configure test failed -- probably because I was h5committest from heiwa due to some ssh wierdness. In any case a manual reconfigure run on jam seemed to work fine. Also, in h5committest, I ran into some data conversion warnings. I didn't worry about them as the only code I changed was in testpar.
* [svn-r19410] Purpose: Jonathan Kim2010-09-174-0/+0
| | | | | Add missing files from the previous checkin. (Add extra test cases for Bug1975 h5diff - support recursive comparison on group when specified as an object)
* [svn-r19409] Purpose: Jonathan Kim2010-09-169-1/+503
| | | | | | | | | | | Add extra test cases for bug1975 h5diff - support recursive comparison on group when specified as an object. Description: Additional tests for combination of group recursive and --follow-symlinks with multi-linked external links with several files (same name/strucure). Tested: jam, amani, heiwa
* [svn-r19406] Purpose:Jonathan Kim2010-09-1617-18/+659
| | | | | | | | | | | Add --exclude-path option Description: Specified path to an object will be excluded from comparing the two files or two groups. If group is specified all the member objects will be excluded. Related to "1890: h5diff excluding object for file comparison via command line" Tested: jam, amani and heiwa
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