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* [svn-r27415] Fix potential error with H5I_clear_type which could occur when ↵Neil Fortner2015-07-205-217/+935
| | | | | | | | | | | a callback closed a different ID in the same type. Added a new skiplist routine, H5SL_try_free_safe, which iterates over items, freeing some of them, and which intercepts and defers attempts to remove from the list outside of the main iteration. Changed H5I_clear_type to use this function. Tested: jam, koala, ostrich (h5committest); ummon
* [svn-r27412] Snapshot version 1.9 release 225HDF Tester2015-07-2013-24/+24
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* [svn-r27407] Updated the H5_ATTR_* macros.Dana Robinson2015-07-185-6/+10
| | | | | | | | | | | | | - Updated the preprocessor logic that defines the H5_ATTR_* macros. The Solaris Studio compiler understands __attribute__ but not the specific attributes that we use. The H5_ATTR_* macros are now defined as blank with that compiler which significantly cleans up the warnings, making debugging easier. - Replaced a few lingering __attribute__ macros with H5_ATTR_* markup. Tested on: h5committest Solaris w/ Solaris Studio (emu)
* [svn-r27372] Snapshot version 1.9 release 224HDF Tester2015-07-1313-24/+24
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* [svn-r27364] Add Mac Framework supportAllen Byrne2015-07-0924-145/+173
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* [svn-r27346] remove reference to file removed from cmake_ext_modAllen Byrne2015-07-081-1/+0
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* [svn-r27339] Snapshot version 1.9 release 223HDF Tester2015-07-0613-49/+52
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* [svn-r27332] Fix src/CMakeLists.txt after Quincey's metadata cache changesJerome Soumagne2015-07-021-0/+2
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* [svn-r27320] Fix uninitialized memory write valgrind errors in trunk. Did ↵Neil Fortner2015-07-018-16/+46
| | | | | | | | this by modifying metadata cache clients to clear unused memory in the buffer after serializing. Tested: ummon; jam, koala, ostrich (h5committest)
* [svn-r27313] switch internal cdash URLAllen Byrne2015-06-301-2/+2
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* [svn-r27298] Description:Quincey Koziol2015-06-295-134/+159
| | | | | | | | | Separate H5AC layer from using package-scoped pieces of the H5C layer, moving from including H5Cpkg.h to H5Cprivate.h. Tested on: MacOSX/64 10.10.3 (amazon) w/serial, parallel & production Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r27296] Description:Quincey Koziol2015-06-297-38/+28
| | | | | | | | | Correct error with braces around macro (in production builds), also clean up a few warnings. Tested on: MacOSX/64 10.10.3 (amazon) w/serial, parallel & production Linux/32 2.6 (jam) w/serial & parallel
* [svn-r27294] Description:Quincey Koziol2015-06-296-711/+320
| | | | | | | | | | Clean up parameters to H5C__flush_single_entry: accept cache entry instead of address, and make new flag for deleting entry from skiplist on destroy instead of a separate parameter to the routine. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r27293] Description:Quincey Koziol2015-06-2712-3512/+3666
| | | | | | | | Split parallel metadata cache code into separate source code modules. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel (too minor for h5committest)
* [svn-r27292] Description:Quincey Koziol2015-06-276-22/+62
| | | | | | | | | | Bring 'fail if unknown always' object header message flag from the avoid_truncate branch, strengthen error checking for unknown messages, and try to catch object header code configurations at compile time (instead of runtime). Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r27283] Change generic directory in tarballs to hdfsrc.Larry Knox2015-06-251-4/+4
| | | | Remove some commented lines.
* [svn-r27280] Add temporary file to create tarballs for buildbot (and ↵Larry Knox2015-06-242-0/+395
| | | | possibly all) daily testing. When the behavior is acceptable, the changes should be merged into the regular release script as a --revision option.
* [svn-r27278] Merge of 27270 from trunk. Fixes HDFFV-9119 and HDFFV-9421.Dana Robinson2015-06-246-84/+110
| | | | | | | | | | | | | Changes that allow the autotools to correctly deal with inline functions. - Inline markup schemes are now checked with AC_COMPILE_IFELSE tests instead of AC_C_INLINE. - The inline designator is now H5_INLINE instead of H5_inline. This is now set in H5private.h instead of H5pubconf.h. Tested on: h5committest
* [svn-r27271] fix a few warnings in t_mpi.cMohamad Chaarawi2015-06-231-4/+3
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* [svn-r27267] Combine float checks and int checks to eliminate possible conflictsAllen Byrne2015-06-221-199/+213
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* [svn-r27262] Snapshot version 1.9 release 222HDF Tester2015-06-2213-24/+24
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* [svn-r27252] Fix whitespaceAllen Byrne2015-06-191-15/+15
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* [svn-r27243] fix problem with encoding/decoding external fapl for lapls.Mohamad Chaarawi2015-06-188-25/+41
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* [svn-r27238] Add function prototype for local functionAllen Byrne2015-06-181-29/+30
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* [svn-r27237] Description:Quincey Koziol2015-06-1889-12802/+19316
| | | | | | | | | Merge v3 metadata cache changes to trunk. Yay! :-) Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel (daily tested on branch)
* [svn-r27216] The comments in this example were incorrect regarding the resultingBarbara Jones2015-06-161-3/+3
| | | | dataset. They were updated to match the output of the file. (HDFFV-637)
* [svn-r27207] use "closing" flag instead of always TRUE in the truncate call.Mohamad Chaarawi2015-06-151-1/+1
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* [svn-r27206] fix for HDFFV-9418. Mohamad Chaarawi2015-06-151-8/+9
| | | | | | | - Moving truncate to H5F_flush() where it was done a long time ago. - Add a second H5AC_flush() call after the truncate is done to make sure we write the correct EOA. tested with h5committest
* [svn-r27204] Description:Quincey Koziol2015-06-1522-2158/+1844
| | | | | | | | | Clean up compiler warnings before merging in v3 metadata cache changes from branch. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r27202] Except one file is used by other tests!Allen Byrne2015-06-151-1/+1
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* [svn-r27201] Changed location of packed bits testfilesAllen Byrne2015-06-151-54/+54
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* [svn-r27199] Description:Quincey Koziol2015-06-138-2157/+1201
| | | | | | | | | Large code cleanups and optimizations, in preparation for the upcoming v3 metadata cache merge. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r27198] Set "entire_chunk" to false in H5D__chunk_write() for point ↵Vailin Choi2015-06-122-4/+5
| | | | | | selection as duplicate points are not checked to determine that it is really an "entire chunk". The bug appears from running the mdset.c test. This is a short-term fix for the problem.
* [svn-r27196] Move pbbits file to subfolderAllen Byrne2015-06-1255-137/+137
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* [svn-r27185] fix more instances where both mpi is_initialized and ↵Mohamad Chaarawi2015-06-103-88/+96
| | | | | | is_finalized need to be checked before making any MPI calls. tested with h5committest.
* [svn-r27172] Change disable to skip big test on cygwinAllen Byrne2015-06-092-8/+10
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* [svn-r27171] Disable big test on cygwinAllen Byrne2015-06-092-24/+29
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* [svn-r27163] update manifest for newly added file.Mohamad Chaarawi2015-06-081-0/+1
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* [svn-r27162] fix for HDFFV-9412:Mohamad Chaarawi2015-06-085-20/+112
| | | | | | | - Check for mpi is_initialized and is_finalized before making MPI calls in init/terminate of HDF5. - Add a test to make sure we can make serial HDF5 calls from rank 0 after MPI_Finalize is called. tested with h5committest
* [svn-r27159] Snapshot version 1.9 release 221HDF Tester2015-06-0813-24/+24
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* [svn-r27158] missed rename if UNUSED to H5_ATTR_UNUSED in trace script.Mohamad Chaarawi2015-06-071-1/+1
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* [svn-r27144] Description:Quincey Koziol2015-06-0337-501/+635
| | | | | | | | | | Normalize trunk against the metadata_cache_merge branch, in preparation for merging the branch into the trunk. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/64 2.6.x (koala) w/serial Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r27142] Add optional variable for version extensionAllen Byrne2015-06-031-23/+24
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* [svn-r27133] - Add a new attribute function characterstic for format:Mohamad Chaarawi2015-06-01172-1266/+1279
| | | | | | | | * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* [svn-r27130] Fix warnings in H5TconvJerome Soumagne2015-06-011-91/+132
| | | | | | Remove H5T_INIT_INTERFACE from H5Tconv Add macro in H5Tconv to check overflow when using H5T_CONV_uS
* [svn-r27129] Fix warnings in H5TbitJerome Soumagne2015-06-011-5/+7
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* [svn-r27128] Fix warnings in H5TdbgJerome Soumagne2015-06-011-2/+44
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* [svn-r27127] Snapshot version 1.9 release 220HDF Tester2015-06-0113-24/+24
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* [svn-r27114] Fixed spelling and which file is created with the program.Scot Breitenfeld2015-05-271-1/+1
| | | | Tested: none -- comments only.
* [svn-r27111] move undef of __attribute__ back to private and remove its ↵Mohamad Chaarawi2015-05-264-11/+6
| | | | usage from public routines.
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