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* Merge pull request #661 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-09-089-38/+47
|\ | | | | | | | | | | | | * commit 'aab6d2466f9640d1e08287b0e407124234f6022b': HDFFV-10276 Remove whitespace HDFFV-10276 Remove whitespace HDFFV-10276 Add UD flag option to h5repack
| * HDFFV-10276 Remove whitespaceAllen Byrne2017-09-081-1/+1
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| * HDFFV-10276 Remove whitespaceAllen Byrne2017-09-081-2/+2
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| * HDFFV-10276 Add UD flag option to h5repackAllen Byrne2017-09-079-36/+45
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* | Merge pull request #654 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp3:develop ↵Binh-Minh Ribler2017-09-0818-30/+543
|\ \ | |/ |/| | | | | | | | | | | | | | | to develop Merge after making the changes Dana suggested. * commit '47a2d5e48f5f3dcfed57c5be01178952030828c2': Adding variable initialization Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test) Adding new C++ wrappers Description: Added wrappers for H5Tencode to class DataType and H5Tdecode to classes DataType and its subclasses.
| * Adding variable initializationBinh-Minh Ribler2017-09-078-12/+12
| | | | | | | | | | | | | | Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
| * Merge branch 'develop' of ↵Binh-Minh Ribler2017-09-0422-899/+876
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp3 into develop
| * | Adding new C++ wrappersBinh-Minh Ribler2017-09-0418-30/+543
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Added wrappers for H5Tencode to class DataType and H5Tdecode to classes DataType and its subclasses. // Creates a binary object description of this datatype. void DataType::encode() // Returns the decoded type from the binary object description. virtual DataType* DataType::decode() const; virtual DataType* ArrayType::decode() const; virtual DataType* CompType::decode() const; virtual DataType* DataType::decode() const; virtual DataType* EnumType::decode() const; virtual DataType* FloatType::decode() const; virtual DataType* IntType::decode() const; virtual DataType* StrType::decode() const; virtual DataType* VarLenType::decode() const; Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* | | Merge pull request #659 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-09-071-43/+87
|\ \ \ | | | | | | | | | | | | | | | | * commit 'fa8ed205ba074d19c2a66855a6ecdb959ef38e0d': HDFFV-9988 merge findmpi from cmake and add intel path
| * | | HDFFV-9988 merge findmpi from cmake and add intel pathAllen Byrne2017-09-071-43/+87
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* | | Merge pull request #651 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-09-0731-394/+571
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit 'd3e98edab0282be98b9f5ce67e9083fb93b90cda': HDFFV-9774 Apply standard mask to .err files HDFFV-10276 Add filter mask for standard err HDFFV-9774 Add enable-error-stack argument to h5diff
| * | | HDFFV-9774 Apply standard mask to .err filesAllen Byrne2017-09-066-12/+12
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| * | | HDFFV-10276 Add filter mask for standard errAllen Byrne2017-09-067-12/+15
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| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2017-09-0515-88/+4401
| |\ \ \ | |/ / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'bf570b1a7ca3b9cbd4a59f0933a19ce1bcc99103': (71 commits) Amend tests to explicitly use H5Dcreate2 and H5Dopen2 Revert malloc's back to using hard-coded type for sizeof Minor comment refactoring Update documentation Finish up Parallel Compression test scaling work Partial update for scaling parallel filters tests Modify t_dset.c in lieu of Parallel Compression changes Updated H5C__flush_single_entry() in H5C.c to correct duplicate metadata write bug observed in 1.10.1. Amend MANIFEST Add test for write parallel; read serial case Fix uninitialized array issue in test Test updates Fix bug where incorrect amount of data was being read from the file Add data verification for first half of tests Start adding data verification Switch tests over to use testing macros Updates to parallel filters tests Move test files to testpar directory Add test file to build process Suggested changes from code review ...
* | | | Merge pull request #592 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developJordan Henderson2017-09-0515-88/+4401
|\ \ \ \ | |_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'b95986e50d1d1043952b00cad6595e8ecbff414f': (71 commits) Amend tests to explicitly use H5Dcreate2 and H5Dopen2 Revert malloc's back to using hard-coded type for sizeof Minor comment refactoring Update documentation Finish up Parallel Compression test scaling work Partial update for scaling parallel filters tests Modify t_dset.c in lieu of Parallel Compression changes Updated H5C__flush_single_entry() in H5C.c to correct duplicate metadata write bug observed in 1.10.1. Amend MANIFEST Add test for write parallel; read serial case Fix uninitialized array issue in test Test updates Fix bug where incorrect amount of data was being read from the file Add data verification for first half of tests Start adding data verification Switch tests over to use testing macros Updates to parallel filters tests Move test files to testpar directory Add test file to build process Suggested changes from code review ...
| * | | Merge branch 'develop' of ↵Jordan Henderson2017-09-0129-951/+951
| |\ \ \ | | | | | | | | | | | | | | | ssh://bitbucket.hdfgroup.org:7999/~jhenderson/hdf5.git into develop
| | * \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Jordan Henderson2017-09-0129-951/+951
| | |\ \ \ | |_|/ / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'abcf30f232914c1ec9b8c5f2a3bb3a621af7bfe4': HDFFV-10284 Add VS2017 support Add commentary around calling H5Screate_simple with a single element Miscellaneous improvements (cont.) Description: Put back H5Location::getNumObjs and marked as deprecated in favor of Group::getNumObjs. Platforms tested: Linux/32 2.6 (jam) Darwin (osx1010test) Miscellaneous improvements Description: Moved H5Location::getNumObjs to Group::getNumObjs (i.e., H5Gget_info) Switched reinterpret_cast to static_cast in H5Object::iterateAttrs Miscellaneous cleanup Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test) HDFFV-10282 refactor out assert calls in tools Fix the t_bigio test so that it runs on 32bit machines
| * | | | Amend tests to explicitly use H5Dcreate2 and H5Dopen2Jordan Henderson2017-09-011-28/+28
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| * | | Revert malloc's back to using hard-coded type for sizeofJordan Henderson2017-09-011-23/+23
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| * | | Minor comment refactoringJordan Henderson2017-09-012-4/+5
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| * | | Update documentationJordan Henderson2017-08-311-39/+158
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| * | | Finish up Parallel Compression test scaling workJordan Henderson2017-08-292-93/+49
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| * | | Partial update for scaling parallel filters testsJordan Henderson2017-08-282-366/+438
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| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Jordan Henderson2017-08-2427-514/+883
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '593e4038b3ab474a47e468bb3478d4ae3a6820e6': Fix for daily test failure Fix for the compilation error from the PGI compiler. Modifications based on comments from pull request review (1) Remove unnecessary asserts (2) Add code to insert bad offset values to the test file in gen_bad_offset.c HDFFV-10188 force non-native type description HDFFV-10188 emu insists on printing non-native description Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 file Fix H5HL_offset_into() to return error when offset exceeds heap data block size. Also fix other places that call this routine to detect error return. HDFFV-10188 fix typo HDFFV-10188 add missing copy commands HDFFV-10188 Add tests and files HDFFV-10188 enable null space test HDFFV-10188 add release note HDFFV-10188 - Check for empty string first HDFFV-10188 error on NULL dataspace
| * | | | Modify t_dset.c in lieu of Parallel Compression changesJordan Henderson2017-08-151-5/+2
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| * | | | Updated H5C__flush_single_entry() in H5C.c to correctmainzer2017-08-151-8/+18
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | duplicate metadata write bug observed in 1.10.1. Tested parallel/production on jelly parallel/debug & parallel/production on charis (in develop branch)
| * | | | Amend MANIFESTJordan Henderson2017-08-111-2/+2
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| * | | | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Jordan Henderson2017-08-1192-1438/+5765
| |\ \ \ \ | | | | | | | | | | | | | | | | | | develop
| * | | | | Add test for write parallel; read serial caseJordan Henderson2017-08-111-2/+142
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| * | | | | Fix uninitialized array issue in testJordan Henderson2017-08-111-35/+5
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| * | | | | Test updatesJordan Henderson2017-08-102-42/+241
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| * | | | | Fix bug where incorrect amount of data was being read from the fileJordan Henderson2017-08-101-1/+1
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| * | | | | Add data verification for first half of testsJordan Henderson2017-08-101-28/+105
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| * | | | | Start adding data verificationJordan Henderson2017-08-082-46/+193
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| * | | | | Switch tests over to use testing macrosJordan Henderson2017-08-081-1044/+727
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| * | | | | Updates to parallel filters testsJordan Henderson2017-08-032-172/+175
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| * | | | | Move test files to testpar directoryJordan Henderson2017-08-035-13/+20
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| * | | | | Add test file to build processJordan Henderson2017-08-035-3/+2438
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| * | | | | Suggested changes from code reviewJordan Henderson2017-07-075-12/+60
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| * | | | | Amend header comment errorJordan Henderson2017-07-061-19/+18
| | | | | | | | | | | | | | | | | | Suggested fix for allocating too small of a buffer for the chunk data
| * | | | | Clean up remaining warningsJordan Henderson2017-07-061-6/+21
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| * | | | | Add prototype for H5D__cmp_filtered_collective_io_info_entry_ownerJordan Henderson2017-07-051-0/+2
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| * | | | | Add comment for memory copy possibly not being necessary anymore forJordan Henderson2017-07-051-0/+1
| | | | | | | | | | | | | | | | | | Multi-Chunk I/O
| * | | | | Remove use of H5E_CANTDISTRIBUTE errorJordan Henderson2017-07-052-2/+1
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| * | | | | Add comment for full overwrite special caseJordan Henderson2017-07-051-0/+8
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| * | | | | Add remaining documentation/commentsJordan Henderson2017-07-051-23/+54
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| * | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Jordan Henderson2017-07-051612-16218/+33537
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '6428a637752753cc8a9007c0c3c38b9ea9cc97fd': (165 commits) Skip HDFFV-10160 filenotclosed test for split/multi driver Temporary skip this test for split/multi driver. Further investigation to resolve the failure is needed. Please enter the commit message for your changes. Lines starting More minor whitespace cleanup Fixed a minor comment typo in H5R.c * Reverted removal of H5I_REFERENCE to avoid breaking binary compatibility. * Added a quick H5I_REFERENCE smoke check to test_misc19() in tmisc.c. Added missing free() call to test_misc19(). Purged the unused H5I_REFERENCE from the library. Added a test for VFD IDs to testhdf5. Revert "Partial removal of NDEBUG ifdefs from the library." Partial removal of NDEBUG ifdefs from the library. Removed compiler flag cleanup since Solaris chokes on it. Fix for HDFFV-10160 Modifications to fix the assertion/abort failure when the application does not close the file. Fixed a bug in autotools Fortran processing where a test for the presence of a C long double type always returned true. Updated the --enable-debug/production handling in configure.ac so that it more reliably indicates that the configure option can no longer be used. Previously, using --enable-debug="", etc. would not trigger an error (even though such usage is unlikely). Added awk processing to remove extraneous whitespace from H5_ flags in configure. Fixed a comment in configure.ac HDFFV-10219 another mode change HDFFV-10219 change subset to use BINARY mode for h5dump HDFFV-10219 default input binary to NATIVE Set default of var to NATIVE HDFFV-10219 - disable h5dump tests until h5import NATIVE is fixed ...
| * | | | | | Revise shared chunks redistribution algorithmJordan Henderson2017-05-011-23/+25
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| * | | | | | Separate shared chunks redistribution code out to its own functionJordan Henderson2017-05-012-207/+246
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| * | | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Jordan Henderson2017-04-1731-298/+259
| |\ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '906c1819188755a04fde6cc0ad7346775a6e61b8': Skip tests for page buffering in test/fheap.c for parallel build Skip the two tests for page buffering in test/fheap.c because this feature is disabled in parallel. Activate full testing when this feature is re-enabled in the future for parallel build. Due to HDFVIEW-19 add read VL as string function Fix URL name updated with README changes DAILYTEST-250 change test props to reduce timeout Combined the README_DEVEL and README, and removed out-dated README material Fix for H5Dset_extent test failure with extensive array indexing (HDFFV-9771) 1) Calculate chunk index for extensive array index based on swizzled max chunks when unlim_dim > 0 2) Minor fixes to test/fheap.c that somehow were missed from last check in. See pull request #396 review comments.
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