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* Begin converting dataset code to use shared file pointer instead of top fileQuincey Koziol2019-08-205-30/+126
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* Finish converting H5PB_* routines to use shared file pointer, instead of topQuincey Koziol2019-08-206-51/+54
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* First pass of converting H5PB_* routines to use shared file pointers.Quincey Koziol2019-08-198-50/+151
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* Rest of changes for 'top' file pointer to 'shared' file pointer for H5F__accumQuincey Koziol2019-08-195-17/+16
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* Partial H5F__accum_* routines.Quincey Koziol2019-08-197-38/+36
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* Merge pull request #1865 in HDFFV/hdf5 from ↵Vailin Choi2019-08-162-2/+21
|\ | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-10813-swmr-test-fails-on-jelly-with to develop * commit '538f743c145fbbfa7b1119693efd2ff61b34efae': Changes based on PR feedback. Fix for HDFFV-10813 H5Fset_metadata_read_retry_info() test fails on jelly with PGI/19.
| * Changes based on PR feedback.Vailin Choi2019-08-152-4/+6
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| * Merge pull request #17 in ~VCHOI/my_third_fork from develop to ↵Vailin Choi2019-08-1542-2109/+2508
| |\ | |/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | bugfix/HDFFV-10813-swmr-test-fails-on-jelly-with * commit '3a504899eef1a66031c6f52623c24bb4e51ca51e': Correct name of folder Mostly whitespace in testpar, addl changes for tmp dir Whitespace cleanup Added public H5Sselect_adjust_u and H5Shyper_adjust_s calls. Some refactoring prior to implementing new H5P MPI functions. * Macro cleanup and obvious warning fixes in parallel code. * Moved H5FD comm and info dup/free wrapper code to a new H5mpi.c file and separated it to deal with each MPI type separately. Fix compiler warnings with diabled ROS3 and HDFS VFDs. Fix misuse of [HD]strncpy and [HD]snprintf. Minor formatting changes. Fix test cleanup issue with java groups example. Changed the directory name left out from the previous commit. Changed the name of the temporary directory from 'tmp' to a special name to avoid possible conflicts. Fix H5F_get_file_id and H5F__get_file_id to take app_ref parameter HDFFV-10879 fix test varname
* | Merge pull request #1875 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-08-1511-427/+427
|\ \ | | | | | | | | | | | | | | | | | | * commit '8ef09e5ce9f191c2a7af301f1aec9254f4458a50': Correct name of folder Mostly whitespace in testpar, addl changes for tmp dir Whitespace cleanup
| * | Correct name of folderAllen Byrne2019-08-151-1/+1
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| * | Mostly whitespace in testpar, addl changes for tmp dirAllen Byrne2019-08-158-414/+414
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| * | Whitespace cleanupAllen Byrne2019-08-153-13/+13
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* | Merge pull request #1873 in HDFFV/hdf5 from ↵Dana Robinson2019-08-1510-484/+567
|\ \ | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:H5Pset_fapl_mpi to develop * commit 'bd8da502cf5b763433e3c628a4043a4264529cec': Some refactoring prior to implementing new H5P MPI functions. * Macro cleanup and obvious warning fixes in parallel code. * Moved H5FD comm and info dup/free wrapper code to a new H5mpi.c file and separated it to deal with each MPI type separately.
| * | Some refactoring prior to implementing new H5P MPI functions.Dana Robinson2019-08-1410-484/+567
| | | | | | | | | | | | | | | | | | * Macro cleanup and obvious warning fixes in parallel code. * Moved H5FD comm and info dup/free wrapper code to a new H5mpi.c file and separated it to deal with each MPI type separately.
* | | Merge pull request #1874 in HDFFV/hdf5 from ↵Dana Robinson2019-08-153-0/+82
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:h5s_api_for_daos to develop * commit 'c490fefbc3199d45fa4d3af09dd567671a244e8d': Added public H5Sselect_adjust_u and H5Shyper_adjust_s calls.
| * | | Added public H5Sselect_adjust_u and H5Shyper_adjust_s calls.Dana Robinson2019-08-153-0/+82
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* | | | Merge pull request #1869 in HDFFV/hdf5 from ↵Jerome Soumagne2019-08-155-9/+10
|\ \ \ \ | |/ / / |/| | | | | | | | | | | | | | | | | | | ~JSOUMAGNE/hdf5:topic_file_get_id to develop * commit '7f5a5020c8ec882e6b7eceab878470003e2a8b63': Fix H5F_get_file_id and H5F__get_file_id to take app_ref parameter
| * | | Fix H5F_get_file_id and H5F__get_file_id to take app_ref parameterJerome Soumagne2019-08-145-9/+10
| |/ / | | | | | | | | | Fix app_ref_count from being incremented when private routines are used
* | | Merge pull request #1872 in HDFFV/hdf5 from ↵Jake Smith2019-08-1411-1183/+1416
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:bugfix/ros3_hdfs_warns_squashed to develop * commit '2e5cd3d2b2d953420252c80ab5e32ac95ac0c5b3': Fix compiler warnings with diabled ROS3 and HDFS VFDs. Fix misuse of [HD]strncpy and [HD]snprintf. Minor formatting changes. Fix test cleanup issue with java groups example.
| * | | Fix compiler warnings with diabled ROS3 and HDFS VFDs.Jacob Smith2019-08-1411-1183/+1416
| |/ / | | | | | | | | | | | | | | | Fix misuse of [HD]strncpy and [HD]snprintf. Minor formatting changes. Fix test cleanup issue with java groups example.
* | | Merge pull request #1871 in HDFFV/hdf5 from ↵Ray Lu2019-08-144-5/+5
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:bugfix/directory_name_develop to develop * commit '0b868668bac0d268120844adb9ad216a9a8e1395': Changed the directory name left out from the previous commit. Changed the name of the temporary directory from 'tmp' to a special name to avoid possible conflicts.
| * | | Changed the directory name left out from the previous commit.Songyu Lu2019-08-141-1/+1
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| * | | Changed the name of the temporary directory from 'tmp' to a special name to ↵Songyu Lu2019-08-144-4/+4
| |/ / | | | | | | | | | avoid possible conflicts.
* | | Merge pull request #1866 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-08-141-1/+1
|\ \ \ | |/ / |/| | | | | | | | * commit '2102be3259c14a1e4d94e8526894a16fd389f59d': HDFFV-10879 fix test varname
| * | HDFFV-10879 fix test varnameAllen Byrne2019-08-141-1/+1
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| * Fix for HDFFV-10813 H5Fset_metadata_read_retry_info() test fails on jelly ↵Vailin Choi2019-08-142-1/+18
| | | | | | | | with PGI/19.
| * Merge pull request #16 in ~VCHOI/my_third_fork from develop to ↵Vailin Choi2019-08-141-0/+1
| |\ | |/ |/| | | | | | | | | bugfix/HDFFV-10813-swmr-test-fails-on-jelly-with * commit '2b72832d97496290f74ccaffcda41c3e596f8f49': Added map API build status to libhdf5.settings.
* | Merge pull request #1863 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:map_api_merge ↵Dana Robinson2019-08-141-0/+1
|\ \ | |/ |/| | | | | | | | | to develop * commit '7555bc95d91aa99344cdc3a66d47eb44decad4ac': Added map API build status to libhdf5.settings.
| * Added map API build status to libhdf5.settings.Dana Robinson2019-08-141-0/+1
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* Merge pull request #1862 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-08-135-106/+133
|\ | | | | | | | | | | | | * commit 'e42120c308b619e58f412e167f4449fd003f8ca9': HDFFV-10879 set default API version Remove old code Correct error test spelling and use
| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-08-1350-14/+1979
| |\ | |/ |/| | | | | | | | | | | | | * commit 'aeb145428f5e6bc51742fff031b0cf8cf6fbefbb': Updated h5trav.c to emit output that doesn't require ddl changes for map support. Fixed Map API CMake option Renamed H5Mdelete_key to H5Mdelete and H5Mset to H5Mput. Added ifdef for intel compilers, __GNUC__ has to be defined for header files which use it to work with intel compilers. This gives a warning for intel compiler about fallthrough, so added a check not to include fallthrough if using intel compilers. Added the map (H5M) API
* | Merge pull request #1860 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:map_api_merge ↵Dana Robinson2019-08-1350-13/+1978
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit 'd95745235a468b17f697843adb3d0e54bd919893': Updated h5trav.c to emit output that doesn't require ddl changes for map support. Fixed Map API CMake option Renamed H5Mdelete_key to H5Mdelete and H5Mset to H5Mput. Added the map (H5M) API
| * | Updated h5trav.c to emit output that doesn't require ddl changes for mapDana Robinson2019-08-131-3/+0
| | | | | | | | | | | | support.
| * | Fixed Map API CMake optionDana Robinson2019-08-131-0/+3
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| * | Renamed H5Mdelete_key to H5Mdelete and H5Mset to H5Mput.Dana Robinson2019-08-132-17/+17
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| * | Added the map (H5M) APIDana Robinson2019-08-1350-13/+1978
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* | | Merge pull request #1861 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2019-08-131-1/+1
|\ \ \ | |/ / |/| | | | | | | | * commit 'df7ce9a5c933315af34dd402cfb2ca394003b56b': Added ifdef for intel compilers, __GNUC__ has to be defined for header files which use it to work with intel compilers. This gives a warning for intel compiler about fallthrough, so added a check not to include fallthrough if using intel compilers.
| * | Added ifdef for intel compilers, __GNUC__ has to be defined for header files ↵M. Scot Breitenfeld2019-08-131-1/+1
|/ / | | | | | | which use it to work with intel compilers. This gives a warning for intel compiler about fallthrough, so added a check not to include fallthrough if using intel compilers.
| * HDFFV-10879 set default API versionAllen Byrne2019-08-132-3/+2
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| * Remove old codeAllen Byrne2019-08-131-5/+0
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| * Correct error test spelling and useAllen Byrne2019-08-133-103/+136
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* Merge pull request #1856 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-08-122-2/+2
|\ | | | | | | | | | | * commit 'c476f020769d8f78581ef399c59e3d4e6e202b2f': HDFFV-10879 fix reference file HDFFV-10879 correct API version set command
| * HDFFV-10879 fix reference fileAllen Byrne2019-08-121-1/+1
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| * HDFFV-10879 correct API version set commandAllen Byrne2019-08-121-1/+1
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* Merge pull request #1853 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-08-124-24/+25
|\ | | | | | | | | | | * commit 'd172582ca9573d685a4c3a9a6399113014da4b21': Use a STRING option for API version Fix API version option
| * Use a STRING option for API versionAllen Byrne2019-08-124-27/+23
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| * Fix API version optionAllen Byrne2019-08-122-1/+6
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* Merge pull request #1844 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-08-091-0/+2
|\ | | | | | | | | * commit '07af403991ae8950d1f930f5a6db2c7124ae8f91': Add option to explicitly disable extra tests
| * Add option to explicitly disable extra testsAllen Byrne2019-08-071-0/+2
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* | Merge pull request #1847 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2019-08-091-0/+4
|\ \ | | | | | | | | | | | | * commit 'c56509b490d6834340dedcd3120893028ccb6e8c': Added gcc conditional for __attribute__((fallthrough)), removes 34 warnings on theta (10% of warnings).
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