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* Fixed HDFFV-10684Binh-Minh Ribler2019-01-202-21/+19
| | | | | | | | | | | | | | | Description: The test for HDFFV-10588 has revealed a bug in H5Ewalk. H5Ewalk did not stop midway even when the call back function returns H5_ITER_STOP. This is because a condition is missing from the for loops in H5E__walk causing the callback functions unable to stop until all the errors in the stack are iterated. Quincey advised on the final fix. In this fix, "status" is switched to "ret_value" and HGOTO_ERROR to HERROR, and the for loops won't continue when "ret_value" is not 0. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
* Merge branch 'develop' of ↵Binh-Minh Ribler2019-01-1598-1488/+3402
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop
| * Merge pull request #1476 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-01-141-1/+1
| |\ | | | | | | | | | | | | | | | * commit 'fe5650727c55e44e2605b667ac35f74993834643': Correct fix for new policy Fix for new policy
| | * Correct fix for new policyAllen Byrne2019-01-141-1/+1
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| | * Fix for new policyAllen Byrne2019-01-141-1/+1
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| * Merge pull request #1471 in HDFFV/hdf5 from fix_daily_test_on_platypus to ↵Quincey Koziol2019-01-121-13/+39
| |\ | | | | | | | | | | | | | | | | | | develop * commit '3a31d37abb1fe390d4e28502e7de3ad6da092970': Work around compiler fussiness on platypus.
| | * Work around compiler fussiness on platypus.Quincey Koziol2019-01-111-13/+39
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| * Merge pull request #1468 in HDFFV/hdf5 from merge_hyperslab_updates_02 to ↵Quincey Koziol2019-01-117-213/+128
| |\ | | | | | | | | | | | | | | | | | | develop * commit '4729d04d9123e8cd6b2bba071695ace7ddd2a7b5': Delta reduction against hyperslab_updates branch.
| | * Delta reduction against hyperslab_updates branch.Quincey Koziol2019-01-117-213/+128
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| * Merge pull request #1465 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to ↵Dana Robinson2019-01-111-4/+4
| |\ | | | | | | | | | | | | | | | | | | develop * commit 'b82ced10619731125b9db7b1ac36f3844463df9a': Fix for Fortran failures.
| | * Merge branch 'develop' of ↵Dana Robinson2019-01-112-0/+72
| | |\ | | |/ | |/| | | | https://bitbucket.hdfgroup.org/scm/~derobins/hdf5_der into develop
| * | Merge pull request #1464 in HDFFV/hdf5 from vol_wrapping_apis to developQuincey Koziol2019-01-112-0/+72
| |\ \ | | | | | | | | | | | | | | | | * commit '6d897f3c10241cbc50a728870d58269d15e36984': Add API routines to wrap and retrieve objects
| | * | Add API routines to wrap and retrieve objectsQuincey Koziol2019-01-112-0/+72
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| | * Fix for Fortran failures.Dana Robinson2019-01-111-4/+4
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| * Merge pull request #1462 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-01-096-164/+55
| |\ | | | | | | | | | | | | | | | * commit '9b0281736ca488387afd8a301e36e6f5a5315c4a': Fix deprecated H5Pget_version Fix regex
| | * Fix deprecated H5Pget_versionAllen Byrne2019-01-095-127/+18
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| | * Fix regexAllen Byrne2019-01-091-37/+37
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| * Merge pull request #1461 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2019-01-092-2/+12
| |\ | | | | | | | | | | | | | | | * commit 'b3743a44238c284dc3817652271aa1475e3c4946': fixed 8 byte integer issue fix for xlf compiler
| | * fixed 8 byte integer issueM. Scot Breitenfeld2019-01-091-1/+10
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| | * Merge branch 'develop' of ↵M. Scot Breitenfeld2019-01-091-6/+6
| | |\ | | |/ | |/| | | | ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop
| * | Merge pull request #1460 in HDFFV/hdf5 from ↵Dana Robinson2019-01-091-6/+6
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_minor_pr to develop * commit '287b5d03df03f9da5cf47f52e594f9909493d8ff': Fixed the MANIFEST
| | * | Fixed the MANIFESTDana Robinson2019-01-091-6/+6
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| | * fix for xlf compilerM. Scot Breitenfeld2019-01-091-1/+2
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| * Merge pull request #1458 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2019-01-091-5/+5
| |\ | | | | | | | | | | | | | | | * commit '4f9ecd71e510a3835a49073fc16d3091a7fc25b2': replaced uint fix uint
| | * replaced uintScot Breitenfeld2019-01-092-6/+6
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| | * Merge branch 'develop' of ↵M. Scot Breitenfeld2019-01-080-0/+0
| | |\ | | | | | | | | | | | | ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop
| | * | fix uintM. Scot Breitenfeld2019-01-081-1/+1
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| * | | Merge pull request #1455 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developJordan Henderson2019-01-092-0/+59
| |\ \ \ | | | | | | | | | | | | | | | | | | | | * commit '2d7eb9a4c3a841f7612b88f6b559792cb6143930': Align behavior of H5Aget_name_by_idx with H5Aget_name when a NULL buffer is supplied
| | * | | Align behavior of H5Aget_name_by_idx with H5Aget_name when a NULL buffer is ↵Jordan Henderson2019-01-082-0/+59
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| * | | | Merge pull request #1441 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-01-093-3/+19
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr_fixbug:develop to develop * commit '90d13bef33f9e2e80b23996a0c39f16f7c34ecf8': Fixed typo Platforms tested: Darwin (osx1010test) Refixed HDFFV-10578 Description: Applied Neil's fix for this issue after removing previous attempt. The resources are now released in init_objs() when failure occurs there. Neil will fix HDFFV-10676 separately. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test) Removed previous change in H5O__chunk_deserialize(). Removed the previous change in H5O__chunk_deserialize() Removed previous change in table_list_add(). Removed the previous change in table_list_add() Updated per review Description: HDFFV-10676 - CVE-2018-13873 Changed the new assert to if statement, per Dana's comment. Platforms tested: Linux/64 (jelly) HDFFV-10578 and HDFFV-10676 Description: HDFFV-10578 - CVE-2018-17234 The file has some issue, however, there was a bug in h5dump that caused memory leaks after the problem in the file was encountered. The bug was that an if statement was missing in the function table_list_add() resulting in the memory not being freed at a later time. After the fix had been applied, there were no more leaks after h5dump detected the issue in the file and reported the error.
| * \ \ \ \ Merge pull request #1450 in HDFFV/hdf5 from ↵Ray Lu2019-01-085-9/+128
| |\ \ \ \ \ | | |_|_|_|/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:TRILAB-98-dt_arith-and-cpp_testhdf5-tests to develop * commit 'b02de315b93ac29d2483a91d526b110a25073505': NNSA Tri-LabsTRILAB-98: Another two test cases out. NNSA Tri-Labs TRILAB-98: Taking out a few more test cases. NNSA Tri-Labs TRILAB-98 dt_arith and cpp_testhdf5 tests fail on sierra.llnl.gov: According to the group decision, simply provide a macro to disable some failing test cases on sierra (IBM power9 cpu). All failing cases involve long double data type.
| | * | | | NNSA Tri-LabsTRILAB-98: Another two test cases out.Songyu Lu2019-01-081-1/+18
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| | * | | | NNSA Tri-Labs TRILAB-98: Taking out a few more test cases.Songyu Lu2019-01-082-13/+25
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| | * | | | NNSA Tri-Labs TRILAB-98 dt_arith and cpp_testhdf5 tests fail on ↵Songyu Lu2019-01-085-2/+92
| | | | | | | | | | | | | | | | | | | | | | | | sierra.llnl.gov: According to the group decision, simply provide a macro to disable some failing test cases on sierra (IBM power9 cpu). All failing cases involve long double data type.
| * | | | | Merge pull request #1456 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2019-01-081-1/+22
| |\ \ \ \ \ | | |_|_|/ / | |/| | | / | | | |_|/ | | |/| | * commit 'fb5d83e146679f4d0ca16cf54b410f04a262451e': Updated Fortran Bug and new features
| | * | | Updated Fortran Bug and new featuresM. Scot Breitenfeld2019-01-081-1/+22
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| * | | Merge pull request #1454 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-01-082-37/+40
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'b88df58cc952563c35107daa1b8ced24b0cc03b5': Add missing define created in configure.ac Correct regex option
| | * | | Add missing define created in configure.acAllen Byrne2019-01-081-0/+3
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| | * | | Correct regex optionAllen Byrne2019-01-081-37/+37
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| * | | Merge pull request #1452 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developJordan Henderson2019-01-081-4/+8
| |\ \ \ | | | | | | | | | | | | | | | | | | | | * commit '805b64685371982e9c7fd693497865197990cbd6': Fix for parallel filters tests with new read-proc0-broadcast feature
| | * | | Fix for parallel filters tests with new read-proc0-broadcast featureJordan Henderson2019-01-081-4/+8
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| * | | | Merge pull request #1409 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:J10443 to developScot Breitenfeld2019-01-0812-70/+605
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'b4d4d371a03158c39f120b1bde6c4bd51f1b2eb6': HDFFV-10443: Add "field" parameter to H5Oinfo* and H5Ovisit* APIs. Added chunked dataset, H5S_ALL test typo typo updated defined constants Documented HDFFV-10652 HDFFV-10652 Implemented a process-0 read and then broadcast for collective read of full datasets (H5S_ALL) by all the processes in the file communicator. Removed reason for breaking read-proc0-and-bcast switched to using CX instead of a global var. HDFFV-10652 Implemented a process-0 read and then broadcast for collective read of full datasets (H5S_ALL) by all the processes in the file communicator.
| | * | | | HDFFV-10443: Add "field" parameter to H5Oinfo* and H5Ovisit* APIs.Scot Breitenfeld2019-01-0814-78/+600
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| | * | | | Merge remote-tracking branch 'upstream/develop' into developM. Scot Breitenfeld2019-01-0835-335/+627
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| | * | | | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵M. Scot Breitenfeld2019-01-07208-10362/+16177
| | |\ \ \ \ | | | | |/ / | | | |/| | | | | | | | develop
| | * | | | Added chunked dataset, H5S_ALL testM. Scot Breitenfeld2019-01-031-3/+111
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| | * | | | Merge branch 'develop' of ↵M. Scot Breitenfeld2019-01-021-1/+7
| | |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop
| | | * | | | typoM. Scot Breitenfeld2019-01-021-1/+1
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| | | * | | | Merge branch 'develop' of ↵M. Scot Breitenfeld2019-01-021-1/+7
| | | |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop
| | | | * | | | Documented HDFFV-10652M. Scot Breitenfeld2019-01-021-1/+7
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