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* Doxygen add new files and update docsAllen Byrne2020-11-035-53/+45
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* Doxygen remove obsolete fileAllen Byrne2020-11-031-20/+0
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* Add doxygen auotoconf and cmake supportAllen Byrne2020-11-0331-6/+4400
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* Merge pull request #69 from xantares/mingw3Larry Knox2020-11-027-4/+16
|\ | | | | CMake: Add an option to opt-out static libgcc
| * CMake: Add an option to opt-out static libgccMichel Zou2020-10-317-4/+16
| | | | | | | | | | With sjlj exception model, statically link to libgcc/libstdc++ prevents exceptions to be caught from other dynamic libraries.
* | Merge pull request #67 from xantares/mingw1Larry Knox2020-10-311-1/+1
|\ \ | | | | | | CMake: Set specific INSTALL_DATA_DIR only on MSVC
| * | CMake: Set specific INSTALL_DATA_DIR only on MSVCMichel Zou2020-10-301-1/+1
| | | | | | | | | | | | | | | For MinGW we want INSTALL_DATA_DIR to be set to share instead of . to properly install files in a standard package layout.
* | | Merge pull request #70 from xantares/mingw4Larry Knox2020-10-3114-32/+33
|\ \ \ | |_|/ |/| | CMake: MINGW implies WIN32
| * | CMake: MINGW implies WIN32Michel Zou2020-10-3014-32/+33
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* | Merge pull request #68 from xantares/mingw2Larry Knox2020-10-303-2/+10
|\ \ | | | | | | CMake: Add an option to opt-out MSVC naming convention
| * | CMake: Add an option to opt-out MSVC naming conventionMichel Zou2020-10-303-2/+10
| |/ | | | | | | | | We might want to keep the default mingw import name, see: https://github.com/msys2/MINGW-packages/blob/master/mingw-w64-hdf5/hdf5-default-import-suffix.patch
* | Merge pull request #65 from derobins/minor/mpi_2gb_limitLarry Knox2020-10-301-14/+14
|\ \ | | | | | | Fixes a bit shift issue in an MPI constant
| * | Fixes a bit shift issue in an MPI constantDana Robinson2020-10-291-14/+14
| |/ | | | | | | | | Redefines TWO_GIG_LIMIT to be INT32_MAX instead of 1 << 31, which fixes an issue revealed by compiling with -Wshift-overflow.
* | Merge pull request #66 from derobins/minor/HD_to_H5MMLarry Knox2020-10-306-39/+39
|\ \ | |/ |/| Replaces C standard library memory calls with H5MM equivalents
| * Replaces C std library calls with H5MM equivalentsDana Robinson2020-10-306-39/+39
|/ | | | Mostly H5MM_memcpy in newer VFDs
* Merge pull request #62 from byrnHDF/developLarry Knox2020-10-299-245/+1844
|\ | | | | HDFFV-10868 - add H5Sselect API java wrappers.
| * HDFFV-10868 Corrections from reviewAllen Byrne2020-10-292-22/+22
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| * HDFFV-10868 - add noteAllen Byrne2020-10-281-0/+9
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| * HDFFV-10868 - add H5Sselect API java wrappers.Allen Byrne2020-10-278-244/+1834
| | | | | | Also added javadoc comments to H5E and H5s constants.
* | Merge pull request #64 from derobins/minor/vfd_warning_cleanupLarry Knox2020-10-2913-58/+34
|\ \ | |/ |/| Fixes minor issues in various virtual file drivers
| * Fixes minor issues in various virtual file driversDana Robinson2020-10-2913-58/+34
|/ | | | | | | | | | | | - HDFS VFD files now ignored in the Autotools when the HDFS VFD is not being built. - All VFD init code uses idiomatic H5I_INVALID_HID instead of -1 or FAIL. - The HDFS VFD now includes H5FDdrvr_module.h in the right place. - The HDFS tests in test/hdfs.c no longer pass NULL to VERIFY macros, which raised warnings. - Minor tweaks to fix const, unused variables, etc. warnings in several VFDs.
* Merge pull request #59 from derobins/trivial/HDprefixLarry Knox2020-10-2467-360/+444
|\ | | | | HD prefix updates in src/ and test/
| * Restores erroneously deleted key_id field from S3 VFDDana Robinson2020-10-241-1/+1
| | | | | | | | | | Accidentally deleted while preparing the PR. Only existed in a branch.
| * HD prefix updates in src/ and test/Dana Robinson2020-10-2467-361/+445
| | | | | | | | | | | | | | Adds missing HD prefixes to API calls in src and test. Adds some extra processing to bin/checkposix to keep the noise levels down when running the script (not comprehensive).
* | Merge pull request #56 from derobins/minor/implicit_fallthroughLarry Knox2020-10-237-3/+39
|\ \ | |/ |/| Removes -Wimplicit-fallthrough=5 from the gcc warnings
| * Removes -Wimplicit-fallthrough=5 from the gcc warningsDana Robinson2020-10-227-3/+39
| | | | | | | | | | | | | | | | | | | | | | | | -Wimplicit-fallthrough=3 is added by -Wextra, which we already set. Bumping the warning level only changes how fall-through comments are parsed, with level 5 turning off fall-through comments entirely. This is unnecessary and results in having to do extra work to squash warnings when included external code uses fall-through. This change also adds /* FALLTHROUGH */ comments where H5_ATTR_FALLTHROUGH is used so compilers that don't use attributes but do respect fall-through comments don't raise spurious warnings.
* | Merge pull request #55 from byrnHDF/developLarry Knox2020-10-223-14/+14
|\ \ | |/ |/| Correct SZ options for building plugins
| * Correct SZ options for building pluginsAllen Byrne2020-10-213-14/+14
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* Merge pull request #49 from byrnHDF/developLarry Knox2020-10-202-1/+3
|\ | | | | options corrections
| * URL and options correctionsAllen Byrne2020-10-192-1/+3
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* | Merge pull request #47 from byrnHDF/developLarry Knox2020-10-195-17/+18
|\ \ | |/ | | Whitespace and url correction
| * Whitespace and url correctionAllen Byrne2020-10-195-17/+18
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* Update javadoc comments to reduce warnings (#41)Allen Byrne2020-10-1644-98/+2964
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* Merge pull request #37 from takluyver/description-errnoLarry Knox2020-10-151-0/+6
|\ | | | | Note that the description for system errors may be used by h5py
| * More general message about using description for errnoThomas Kluyver2020-10-151-2/+6
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| * Note that the description for system errors may be used by h5pyThomas Kluyver2020-10-151-0/+2
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* Merge pull request #31 from byrnHDF/developLarry Knox2020-10-093-5/+4
|\ | | | | Comment adjustments
| * Comment adjustmentsAllen Byrne2020-10-083-5/+4
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* Merge pull request #25 from byrnHDF/developLarry Knox2020-10-075-130/+18
|\ | | | | gitub workflow changes
| * Remove obsolete fileAllen Byrne2020-10-072-112/+0
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| * Merge remote-tracking branch 'origin/develop' into developAllen Byrne2020-10-0741-14551/+14431
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* | Update reformatting settings, trace wrapping, and printf-format strings (#22)Quincey Koziol2020-10-0641-14551/+14431
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Add BEGIN_FUNC / CATCH / END_FUNC to macros * Remove incorrect trailing '{' * Update trace script to wrap H5TRACE macros at 110 characters and improve comments for code that performs this operation. * Clean up printf-formatting in H5public.h and correct some oversights in the code. * Reformat with BEGIN_FUNC / END_FUNC handled correctly by clang-format * Run clang-format on changes. * Correct H5_SIZEOF_HSIZE_T/H5_SIZEOF_HSSIZE_T macros to match typedef. * And make the undef value match also. * Update comment * Update clang-format actions to exclude generated files. * Post-process generated H5LTparse.h file as well as H5LTparse.c file. * Fix formatting * Update version of github clang-format action
| * Update code ownersAllen Byrne2020-10-071-3/+3
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| * Merge branch 'develop' of https://github.com/HDFGroup/hdf5.git into developAllen Byrne2020-10-060-0/+0
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* | Fix VFD h5repacktest (#20)Allen Byrne2020-10-067-137/+141
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * h5repacktest VFD fix and formatting changes * Fix memory leak in H5PL__find_plugin_in_path When encountering a directory, the current loop iteration was skipped without freeing the memory allocated for the path. * Refactor parser GCC diagnostic statements * genparser on jelly with default bison/flex Co-authored-by: Michael Kuhn <michael.kuhn@ovgu.de>
* | Merge pull request #15 from lrknox/developLarry Knox2020-10-052-10/+7
|\ \ | | | | | | Correct entries related to --enable-build-mode and --enable-profiling in
| * | Correct entries related to --enable-build-mode and --enable-profiling inLarry Knox2020-10-032-10/+7
| | | | | | | | | | | | INSTALL file, and remove obsolete SZIP paragraph from COPYING file.
* | | Merge pull request #12 from byrnHDF/developLarry Knox2020-10-0510-23/+23
|\ \ \ | | | | | | | | HDFFV-11096 fix typo in h5dump usage text
* \ \ \ Merge pull request #16 from michaelkuhn/fix-plugin-path-leakLarry Knox2020-10-051-1/+3
|\ \ \ \ | | | | | | | | | | Fix memory leak in H5PL__find_plugin_in_path
| * | | | Fix memory leak in H5PL__find_plugin_in_pathMichael Kuhn2020-10-051-1/+3
|/ / / / | | | | | | | | | | | | | | | | When encountering a directory, the current loop iteration was skipped without freeing the memory allocated for the path.
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