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* Add support for namespace and add tools to binaries configAllen Byrne2016-10-1424-13/+49
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* Correct name and usage of cmake variableAllen Byrne2016-10-103-6/+6
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* Add STGZ to mac cpack listAllen Byrne2016-10-071-0/+1
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* Merge from master cmake_conf projectAllen Byrne2016-10-072-79/+80
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* Merge pull request #61 in HDFFV/hdf5 from ↵Allen Byrne2016-10-067-67/+23
|\ | | | | | | | | | | | | | | | | | | | | ~BYRN/hdf5_adb:bugfix/HDFFV-9961-add-git-to-ext-filter to develop * commit 'd817b63020310b6f275a569529075551dd2b756e': Fix copyright to point to cmake Fix cyclic depends due to typo Correct how include is used when located inside project HDFFV-9961: Add GIT option to ext lib macros Update copyright to latest from kitware
| * Fix copyright to point to cmakeAllen Byrne2016-10-064-8/+4
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| * Fix cyclic depends due to typoAllen Byrne2016-10-051-4/+3
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| * Correct how include is used when located inside projectAllen Byrne2016-10-051-1/+1
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| * HDFFV-9961: Add GIT option to ext lib macrosAllen Byrne2016-10-042-8/+11
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| * Update copyright to latest from kitwareAllen Byrne2016-10-044-56/+14
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* | Merge pull request #47 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2016-10-0617-363/+240
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'f9364c0080405bb36d704eb3f9505029d3da41f4': removed the use of C_SIZEOF for non BIND(C) derived type Fixed test to use storage_size instead of c_sizeof when available. fixed missing closing bracket Removed unused variables. Fixed: Fortran_DOUBLE was being set to C_LONG_DOUBLE when C_LONG_DOUBLE is not available. Removed duplicate FCFLAG Removed duplicate FCFLAG. Added number of integer KINDs found to the header files. Added path to source include files when building buidiface. Added rule to build buildiface program, without a rule, build would add repeated compile options when using the NAG compiler. Misc. cleaning up of the program. Added SEQUENCE to derived types for NAG: misc. format code-cleanup Removed the use of hard-coded integer KINDs. Code clean-up. HDFFV-9973 Fortran library fails to compile and fails tests with NAG compiler
| * | removed the use of C_SIZEOF for non BIND(C) derived typeM. Scot Breitenfeld2016-10-031-5/+1
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| * | Fixed test to use storage_size instead of c_sizeof when available.M. Scot Breitenfeld2016-09-291-4/+4
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| * | fixed missing closing bracketM. Scot Breitenfeld2016-09-291-1/+1
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| * | Removed unused variables.M. Scot Breitenfeld2016-09-291-12/+12
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| * | Fixed: Fortran_DOUBLE was being set to C_LONG_DOUBLE when C_LONG_DOUBLE is ↵M. Scot Breitenfeld2016-09-293-12/+20
| | | | | | | | | | | | not available.
| * | Removed duplicate FCFLAGM. Scot Breitenfeld2016-09-291-3/+0
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| * | Removed duplicate FCFLAG.M. Scot Breitenfeld2016-09-293-8/+2
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| * | Added number of integer KINDs found to the header files.M. Scot Breitenfeld2016-09-266-28/+41
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| * | Added path to source include files when building buidiface.M. Scot Breitenfeld2016-09-262-2/+2
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| * | Added rule to build buildiface program, without a rule, build would add ↵M. Scot Breitenfeld2016-09-262-2/+9
| | | | | | | | | | | | repeated compile options when using the NAG compiler.
| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Scot Breitenfeld2016-09-232-27/+81
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'a7fb4ede8601e135433ef2d23bf4bbb466d9f58d': Fix bug in "nooptype" decode in fix for TALOS-0177. Change check for number of dimensions for old-style arrays in datatype decoding routine from an assertion to an if/HGOTO_ERROR check, since it is inappropriate to assert the contents of a file will be what we expect. Fix issues in H5Znbit.c where the decompression algorithm would not check the compressed data for validity, potentially causing a buffer overflow. Replace assertion in H5O_dtype_decode_helper for number of array dimensions with a check and error. The assertion was inappropriate because it is operating on data read from the file, which the library does not always have direct control of.
| * | | Misc. cleaning up of the program.M. Scot Breitenfeld2016-09-232-92/+15
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| * | | Added SEQUENCE to derived types for NAG:M. Scot Breitenfeld2016-09-232-3/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Section 81 of the compiler manual, e.g. at http://www.nag.co.uk/nagware/np/r61_doc/np61_manual.pdf covers details about the compiler's internal representations, including " Fortran derived types are translated into C structs. If BIND(C) or SEQUENCE is used, the order of the items within the struct is the same as the order within the derived type definition. Otherwise, the order of items is permuted to put larger types at the front of the struct so as to improve alignment and reduce storage; the C output code can be inspected to determine the ordering used. " Removed INTENT(IN) to fix segfaults in C APIs for TYPE(C_PTR). Tested: NAG (gnu)
| * | | misc. format code-cleanupM. Scot Breitenfeld2016-09-221-6/+0
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| * | | Removed the use of hard-coded integer KINDs.M. Scot Breitenfeld2016-09-221-17/+15
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| * | | Code clean-up.M. Scot Breitenfeld2016-09-221-2/+1
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| * | | Merge branch 'develop' of ↵M. Scot Breitenfeld2016-09-2213-117/+415
| |\ \ \ | | | | | | | | | | | | | | | ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop
| * | | | HDFFV-9973 Fortran library fails to compile and fails tests with NAG compilerM. Scot Breitenfeld2016-09-227-234/+181
| | | | | | | | | | | | | | | | | | | | Fixes issues with KIND = BYTE assumptions.
* | | | | Merge pull request #57 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2016-10-0524-306/+49
|\ \ \ \ \ | | |_|_|/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | All changes tested in Buildbot and locally. * commit '8c49b6e05a7d40218b8129b29bd74bbd2b39758d': HDFFV-9991: Remove uneeded file Fix missing defines for standalone perf Remove hanging property set Revert clear objects for testfile removal Merge test output file clearing into runTest.cmake Move clear-objects inside runTest
| * | | | HDFFV-9991: Remove uneeded fileAllen Byrne2016-10-043-102/+0
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| * | | | Fix missing defines for standalone perfAllen Byrne2016-10-031-0/+25
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| * | | | Remove hanging property setAllen Byrne2016-10-031-1/+0
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| * | | | Revert clear objects for testfile removalAllen Byrne2016-10-031-1/+9
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| * | | | Merge test output file clearing into runTest.cmakeAllen Byrne2016-10-0319-212/+17
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| * | | | Move clear-objects inside runTestAllen Byrne2016-10-033-10/+18
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* | | | Merge pull request #55 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developDana Robinson2016-10-016-7/+7
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Checkpoint update * commit '4a2669d51f8f839a63c1257c184318cd8c0ce1ae': Correct typo: add ' ' Snapshot release: increment version.
| * | | | Correct typo: add ' 'lrknox2016-10-011-1/+1
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| * | | | Snapshot release: increment version.lrknox2016-10-016-7/+7
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* | | | Merge pull request #54 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to developDana Robinson2016-10-011-7/+7
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fixes the v16 API failures in the evict-on-close test. * commit 'dd47e42313fd4d76da95b7e48013bcd0d8879434': Changed H5Dcreate to H5Dcreate2 in test/evict_on_close.c
| * | | | Changed H5Dcreate to H5Dcreate2 in test/evict_on_close.cDana Robinson2016-10-011-7/+7
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* | | | Merge pull request #53 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2016-09-303-11/+35
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | * commit '2299ff06c3dd9d5dee5320999a282f1526c27be7': Correct variable name Fix error reporting
| * | | | Correct variable nameAllen Byrne2016-09-301-2/+2
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| * | | | Fix error reportingAllen Byrne2016-09-303-9/+33
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* | | | | Merge pull request #52 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to developDana Robinson2016-09-3024-42/+1027
|\ \ \ \ \ | |/ / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Merged evict-on-close feature from branch (via develop in cloned repo). * commit 'cbc260e636e258cc55d9fb8fdafd3bff0877ac23': (21 commits) - Removed BRANCH.txt and MANIFEST entry - Fixed a missing line in H5Dint.c - Removed non-implemented code from H5Gint.c - Removed commented-out debug code from H5Dint.c - Added blank lines to eliminate delta in a fortran file. Added full implementation of EoC cache test. Added code to create the test file for all chunk index and layout types. Fleshed out evict on close test that inspects cache. Added the beginnings of a file generator to the test. Fixed typo Added "Purpose:" information to the API call comments for the new functions. Cleaned up feature for dissemination to LLNL: - Removed support for datatypes. - Commented out support for groups - General change clean-up - Added a list of improvements to BRANCH.txt Removed blank line in Fortran file (leftover from last commit) Reverted H5T code since datatypes will not be supported at this time. Fixed format_convert and fortran files (bad merge?). Updated manifest. Was missing BRANCH.txt. Added missing evict on close test file line to test/CMakeLists.txt. [svn-r30110] Added missing evict_on_close.c file to test/. [svn-r30108] Moved group flush and evict code to H5G_close from H5Gclose. [svn-r30107] Moved dataset flush and evict code to H5D_close from H5Dclose. [svn-r30106] Moved datatype close code to new internal function. H5Oclose() now supports evict-on-close for datatypes. [svn-r30105] Datatypes and Groups now support evict-on-close. [svn-r30084] First pass at the evict-on-close feature. ...
| * | | | - Removed BRANCH.txt and MANIFEST entryDana Robinson2016-09-303-23/+1
| | | | | | | | | | | | | | | | | | | | - Fixed a missing line in H5Dint.c
| * | | | - Removed non-implemented code from H5Gint.cDana Robinson2016-09-303-27/+2
| | | | | | | | | | | | | | | | | | | | | | | | | - Removed commented-out debug code from H5Dint.c - Added blank lines to eliminate delta in a fortran file.
| * | | | Merge branch 'develop' into evict_on_closeDana Robinson2016-09-3025-260/+682
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* | | | | Merge pull request #46 in HDFFV/hdf5 from ↵Quincey Koziol2016-09-2916-141/+449
|\ \ \ \ \ | |_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~KOZIOL/hdf5:features/warning_cleanups to develop * commit '5a7880183025f56421cf6f2274d9f1ac36f59641': Clean up hardcoded constants and check return values better. (Comments from group code review) Description: Cleanups from Dana's review. Description: Further warning cleanups: from 667 warnings to 503.
| * | | | Clean up hardcoded constants and check return values better. (Comments fromQuincey Koziol2016-09-296-43/+62
| | | | | | | | | | | | | | | | | | | | group code review)