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* [svn-r21529] Description:Quincey Koziol2011-10-124-4/+78
| | | | | | | | Update tracing information with new types introduced in "actual I/O mode" query routines. Tested on: bin/reconfigure on jam
* [svn-r21525] Description:Scot Breitenfeld2011-10-112-191/+45
| | | | | | | | | Removed hard-coded check of compatible Fortran 2003 compilers; replaced with simple check program for required F2003 features. Does not check for known bugs in compilers, tests will fail for those compilers. Tested: jam (gnu 4.1, 4.5, intel, pgi) linew (default)
* [svn-r21523] Added CLOCK_GET_TIME define to cmake configureAllen Byrne2011-10-112-0/+18
| | | | Tested: local linux
* [svn-r21520] Changed the size of off_t on VMS to 4 bytes from 8 (as reported ↵Dana Robinson2011-10-111-17/+17
| | | | | | by a test program run on VMS). Will be tested on VMS when this is pushed to the 1.8 branch.
* [svn-r21518] - Added definition for HDfseek() to be used later.Dana Robinson2011-10-111-1/+5
| | | | | | - Added comment about requiring _O_BINARY being set on Windows to avoid CR-LF issues. Tested on Windows (minor changes).
* [svn-r21517] - Added checks for clock_gettime() to configure.in.Dana Robinson2011-10-115-115/+325
| | | | | | | | Tested on Linux, FreeBSD, Solaris, MacOSX to ensure they are found correctly and everything builds. No code currently relys on clock_gettime(). - Brought Windows and VMS H5pubconf.h files into sync with the Linux file. Tested on Windows. Ray will test on VMS when this is pushed to the 1.8.x branch.
* [svn-r21511] Synchronize macros for naming with other librariesAllen Byrne2011-10-111-13/+6
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* [svn-r21510] Change to comments.Dana Robinson2011-10-101-23/+7
| | | | Just checked to make sure it still compiled on Windows.
* [svn-r21508] Revoked svn check-ins 20913 and 20921 (fix for HDFFV-7579) ↵Dana Robinson2011-10-107-306/+8
| | | | pending a careful evaluation of enum conversion behavior.
* [svn-r21506] Updated svn properties as needed.Dana Robinson2011-10-106-0/+0
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* [svn-r21505] Updated svn properties as needed in source root.Dana Robinson2011-10-101-0/+0
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* [svn-r21504] Updated svn flags as needed on source files from H5A* to H5C*.Dana Robinson2011-10-101-0/+0
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* [svn-r21502] - Removed Windows VFD code. H5Pset_fapl_windows() actually ↵Dana Robinson2011-10-102-1057/+59
| | | | | | | | sets the SEC2 driver, though it will still report H5FD_WINDOWS. - Set svn:eol-style and svn:keyword properties on H5FDwindows.c/h. Tested on 64- and 32-bit Windows 7 (doesn't affect non-Windows platforms).
* [svn-r21501] - Propagated Windows VFD tweaks to SEC2 and log VFDs.Dana Robinson2011-10-102-235/+353
| | | | | | | | | | - Created typedefs and #defines to make POSIX I/O type-safe on Windows and true POSIX platforms. - Added pre-checks and removed post-checks for POSIX I/O sizes. When the number of bytes to be sent exceeds the maximum return value, the operation is split into smaller subsets. - General code tidying and cleanup. Tested on: jam (64-bit linux), jam + threadsafe, jam + parallel, Windows 7 (64- and 32-bit), freedom (64-bt BSD).
* [svn-r21499] Snapshot version 1.9 release 94HDF Tester2011-10-0914-30/+30
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* [svn-r21497] Changed H5Pset_fapl_log() to deep copy the log file name ↵Dana Robinson2011-10-091-1/+4
| | | | | | instead of copying the pointer. Tested on jam (simple change).
* [svn-r21496] - H5MM_strdup() and H5MM_xstrdup() comments changed to ↵Dana Robinson2011-10-091-28/+25
| | | | | | | | correctly reflect how they respond to an input NULL string. - H5MM_xstrdup() now reports memory allocation errors via the HDF5 error stack (was previously an assert). Tested on local Windows via ctest (trivial change).
* [svn-r21493] Add new mach/mach_time.h header check.Allen Byrne2011-10-072-0/+4
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* [svn-r21490] The configuration file isn't executable!Dana Robinson2011-10-071-0/+0
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* [svn-r21489] Bug:Albert Cheng2011-10-071-4/+4
| | | | | | | | | | | h5dump was used in test script but was not invoked by RUNSERIAL. THis does not work in batch machines like Blue Gene in LLNL. Solution: Added $RUNSERIAL to invoke $H5DUMP_BIN. Tested: LLNL BlueGene (udawn)
* [svn-r21484] Add HDprefix and change when pio_timer.h is includedAllen Byrne2011-10-073-7/+7
| | | | Tested
* [svn-r21481] Add option to enable windows stdioAllen Byrne2011-10-061-0/+10
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* [svn-r21477] Removed the known problem of insufficient memory error in AIX. ↵Albert Cheng2011-10-051-7/+0
| | | | | | It was patched in the config/ibm-aix file.
* [svn-r21476] The first part fix for bug HDFFV-7640: does not need to do ↵Vailin Choi2011-10-056-22/+34
| | | | | | H5O_move_msgs_forward() when writing attributes. h5committested. Tests are checked into the performance suite.
* [svn-r21475] Description: fixed C_LOC(X) non-standard argument X for ↵Scot Breitenfeld2011-10-054-62/+62
| | | | | | multi-dimensional arrays detected using xlf compiler. Tested: jam (intel, gnu, pgi) F2003 compilers.
* [svn-r21469] updated with the change of Windows platform switched back to ↵Albert Cheng2011-10-041-0/+4
| | | | | | use SEC2 as the default VFD.
* [svn-r21459] Problem:Albert Cheng2011-10-041-1/+1
| | | | | | | | | | Some machines, like LLNL udawn, a blue-gene machine, requires all executables, be launched by some command like mpirun. Solution: Added $RUNSERIAL to launch the executable. Tested: LLNL uDawn.
* [svn-r21457] Problem:Albert Cheng2011-10-041-0/+10
| | | | | | | | | | | Function TOOLTEST_OUTPUT does not filter the extra system messages sent to stdout or stderr, thus causing output mismatched with expected output. Solution: Added STDOUT_FILTER and STDERR_FILTER to filter them out. Tested: Tested LLNL uDawn (Blue-Gene cluster), for serial mode only.
* [svn-r21443] Snapshot version 1.9 release 93HDF Tester2011-10-0214-30/+30
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* [svn-r21442] Description:Quincey Koziol2011-10-019-16/+795
| | | | | | | | | | | | | | | | | | | | | | Check in "actual I/O mode" feature to trunk. Will merge back to 1.8 branch after it bakes over the weekend. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.8 (amazon) in debug mode Mac OS X/32 10.6.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r21437] Added listing of all cmake options availableAllen Byrne2011-09-301-0/+47
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* [svn-r21436] Issue 7701 - H5LTdtype_to_text had memory corruption while ↵Raymond Lu2011-09-303-171/+391
| | | | | | being querried about the size of the buffer needed. The problem happened when the internal buffer is reallocated, the new address got lost. I revised the code to pass the new address as the return value of functions. I also added two new test cases. Tested on jam, linew, and koala.
* [svn-r21435] Add F2003 IF-ENDIF protection blocks around _F03 file processingAllen Byrne2011-09-302-2/+28
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* [svn-r21434] Description: Removed 12 byte real tests and definition from ↵Scot Breitenfeld2011-09-301-38/+10
| | | | | | fortran types, it was not used in the main fortran src. Tested: jam (gnu, g95, intel)
* [svn-r21425] Add 2003 fortran to settings textAllen Byrne2011-09-271-0/+1
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* [svn-r21422] Add 2003 examples to cmake buildAllen Byrne2011-09-271-1/+39
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* [svn-r21417] Correct indentation in cmake config file.Allen Byrne2011-09-262-1/+12
| | | | Add option for allowing -fPIC.
* [svn-r21415] Snapshot version 1.9 release 92HDF Tester2011-09-2514-30/+30
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* [svn-r21413] Description:Jonathan Kim2011-09-231-2/+8
| | | | | | | | | | Skip parallel diff test "-c non_comparables1.h5 non_comparables2.h5" due to hanging issue occurring on koala (linux64-LE) intermittently. Plan to put back when resolved. The test was related to J7693. Tested: jam (linux32-LE), koala (linux64-LE)
* [svn-r21412] Change windows default driver to SEC2Allen Byrne2011-09-232-4/+2
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* [svn-r21406] Updated Makefile.in after updating from trunk.Scot Breitenfeld2011-09-211-1/+1
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* [svn-r21405] Added dependencies, for HDF5.lo and HDF5mpio.lo, ↵Scot Breitenfeld2011-09-212-7/+7
| | | | | | | | H5_ff_F90/F03.lo and H5_ff.lo to resolve failures when building HDF5.lo and HDF5mpio.lo. Tested: jam (gcc, mpi) using both: make HDF5.lo and make HDF5mpio.lo
* [svn-r21397] Fix mis-spell non_comparables#.h5. It's from previous checkin ↵Jonathan Kim2011-09-161-2/+2
| | | | for HDFFV-7693. (r21396)
* [svn-r21396] Purpose:Jonathan Kim2011-09-1629-40/+313
| | | | | | | | | | | | | | | | | | | | HDFFV-7693 - h5diff produces different behavior between versions: 1.8.3 and 1.8.6 Description: There were two issues on this. One was not displaying all the comparable objects if non-comparable object/attribute exist and compared before comparables ones. This issue occurred after 1.8.4 release. This is the issue from user. The other issue was not displaying all the comparable attributes, if non-comparable object/attribute exist and compared ahead. This issue were exist even before 1.8.4 release. So it's possible some attribute comparison may have not displayed correctly in the past, if non-comparable data were exist in common object. Fixed h5diff to display all the comparable object and attribute regardless of non-comparables. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam, Windows)
* [svn-r21393] Just moved comment to the top of the Tools' list as the new ↵Jonathan Kim2011-09-141-4/+5
| | | | | | entry is suppose to add to the top not the bottom. Relate to fix for HDFFV-5932 - h5repack.
* [svn-r21389] Test case added for HDFFV-5932 - h5repack breaks files with ↵Jonathan Kim2011-09-141-4/+2
| | | | | | | dimension scales. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE)
* [svn-r21386] Fixed a void pointer (need to cast it to char*) because it ↵Peter Cao2011-09-141-4/+4
| | | | causes problem on Windows.
* [svn-r21382] Update values of references(object and region) of attributes in ↵Peter Cao2011-09-142-160/+324
| | | | h5repack for 1) references, 2) ARRAY of references, 3) VLEN of references, and 4) COMPOUND of references.
* [svn-r21381] Peter Cao2011-09-141-1/+5
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* [svn-r21378] The tools used "%hhd" to print signed char. But VMS doesn't ↵Raymond Lu2011-09-133-3/+19
| | | | | | know it. So I used H5_VMS to have a different way ("%hd") to print it. Tested on jam. Not tested on VMS yet. Simple change.
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