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* Removed the -p option from the command to run autogen.sh. It interferedlrknox2016-08-301-2/+2
| | | | | | | | with running chkmanifest on a machine with the correct autotools versions but without access to /usr/hdf/bin/AUTOTOOLS. The autogen.sh script says the option is for HDF group use only and is likely to be removed. The same effect can be achieved by adding /usr/hdf/bin/AUTOTOOLS to the beginning of PATH.
* Translate svn commands to git commands for chkmanifest and bbreleaselrknox2016-08-292-13/+15
| | | | scripts with source in git repository.
* [svn-r30321] HDFFV-9974: Correct parsing of UD filter parameters.Allen Byrne2016-08-254-8/+18
| | | | Verified by user, who reported issue.
* [svn-r30319] Fix for daily test failure on emu -m64 for the checkin #30310. Vailin Choi2016-08-241-0/+0
| | | | Tested on emu (-m64 & -m32), platypus, mayll, moohan, osx1010test, quail, kituo, ostrich, kite.
* [svn-r30318] whitespace cleanupAllen Byrne2016-08-241-28/+28
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* [svn-r30317] Whitespace cleanupAllen Byrne2016-08-241-364/+297
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* [svn-r30316] Use dns name for CDash instead of ip addressAllen Byrne2016-08-221-1/+1
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* [svn-r30315] HDFFV-9972: Fix test reference and change default for ↵Allen Byrne2016-08-225-14/+14
| | | | H5Iget_name in JNI API.
* [svn-r30314] HDFFV-9971: Change the usage of a CMake variable for the build ↵Allen Byrne2016-08-2210-44/+55
| | | | type to the recommended variable name. Updated documentation.
* [svn-r30313] HDFFV-9972: unsatisfied link error under debug on Windows.Allen Byrne2016-08-2224-1632/+1626
| | | | | | | | | | Added windows name suffix for debug to CMake cmd_arg for examples and test. Fix issues discovered under debug testing; Create a version of H5Iget_name that correctly returns the name. Rework PIN_JAVA_STRING macro and usage to eliminate possible memory leaks by using if-else instead of mid-routine return. Update example to use new H5Iget_name API. Tested: windows under debug
* [svn-r30312] HDFFV-9706: Commit changes as discussed in HDF5-379.Allen Byrne2016-08-221-25/+32
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* [svn-r30311] Purpose: Fix bug HDFFR-9920 cont.Binh-Minh Ribler2016-08-2224-411/+374
| | | | | | | | | | | | | | | | | | | | | | | | | | trunk: Description: Continued rearranging the classes to model the relationship of HDF5 objects more accurately. The changes included: - in the baseclass list of Attribute, changed "public IdComponent" to "public H5Location", because location sometime can be specified with attribute - moved H5A wrappers in H5Location to H5Object because H5A functions can't be called on attribute id - removed the stubs Attribute::iterateAttrs and Attribute::renameAttr - removed Attribute::getFileName and Attribute::flush, because H5Location has them - result of the modified partial class diagram, regarding Attribute IdComponent | H5Location AbstractDs / \ / H5Object Attribute Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r30310] Fix daily test failure for previous checkin #30308.Vailin Choi2016-08-223-1/+1
| | | | Tested on platypus and mayll.
* [svn-r30309] Purpose: Fix bug HDFFR-9920Binh-Minh Ribler2016-08-2023-1408/+1541
| | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Rearranged the classes to model the relationship of HDF5 objects more accurately. The changes included: - moved CommonFG's methods to Group - removed CommonFG from Group's base class list - removed CommonFG from H5File's base class list and changed "public H5Location" to "public Group" in the base class list - CommonFG became unused - result of the modified partial class diagram: IdComponent | H5Location / H5Object | / / \ DadaType Group DataSet | H5File Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r30308] Fix for HDFFV-7991--error when copying dataset with attribute ↵Vailin Choi2016-08-196-4/+418
| | | | | | | which is a compound datatype consisting of a variable length string. Tested on mayll, platypus, osx1010test, emu, kituo, kite, quail, moohan, ostrich.
* [svn-r30306] Updated vfd test to be better about fapls and h5_reset().Dana Robinson2016-08-191-72/+110
| | | | | | | | | | | Prevents the test from segfaulting in other sub-tests when a previous test fails. Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0 Autotools serial + direct VFD (vfd test only) Also tested with a forced error to ensure that the test no longer segfaults and confirmed that all test files are cleaned up.
* [svn-r30303] Fixed unbalanced parentheses in H5F_SAME_SHARED macro. Dana Robinson2016-08-181-1/+1
| | | | | | | | This version of the macro isn't used anywhere in the HDF5 source. Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0 Autotools serial
* [svn-r30301] Changed the print ordering of the SIZE_OF/KIND program output ↵Scot Breitenfeld2016-08-181-9/+9
| | | | | | in order to match what is done in cmake. Tested: gnu, jelly.
* [svn-r30300] Fixed the ordering for KIND and SIZE_OF in the fortarn program ↵Scot Breitenfeld2016-08-181-3/+3
| | | | | | | | in order to match the sed commands. Should only matter for the NAG compiler. Tested: (gnu, jelly)
* [svn-r30297] Changed FAIL_STACK_ERROR to TEST_ERROR in test/vfd.c.Dana Robinson2016-08-181-51/+51
| | | | | Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0 Autotools serial, vfd test only
* [svn-r30295] Minor whitespace cleanup in h5test.c.Dana Robinson2016-08-171-45/+55
| | | | | Tested on: 64-bit Ubuntu 16.04 LTS w/ gcc 5.4.0 Autotools serial w/ make check-vfd
* [svn-r30292] Description:Quincey Koziol2016-08-161-1/+1
| | | | | | | | Correct failure on older Windows compilers. Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30289] Fix for HDFFV-9960 H5DOappend without append callback.Vailin Choi2016-08-141-20/+18
| | | | | This is the second part of the fix--see crucible review HDF5-383. Tested on mayll, platypus, osx1010test, emu, kituo, kite, quail, moohan, ostrich.
* [svn-r30285] Description:Quincey Koziol2016-08-1331-350/+331
| | | | | | | | | More warning cleanups, bringing the build down to 25 unique types of warnings, with 550 warnings in 122 files (down from 28, 770, and 134). Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30279] Purpose: Code improvement (HDFFR-9725)Binh-Minh Ribler2016-08-1213-101/+78
| | | | | | | | | Description: Removed deprecated functions in previous releases due to missing const. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r30275] Rework test_mf_bug1 to work with multi and split drivers.Neil Fortner2016-08-091-66/+106
| | | | Tested: ummon
* [svn-r30272] Purpose: Code improvementBinh-Minh Ribler2016-08-099-82/+37
| | | | | | | | | | | Description: - Added "const" to arguments that should be const - Added "const" to const functions, i.e., function that don't change the objects they operate on. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r30270] Fix an issue that could occur when allocating a chunked dataset ↵Neil Fortner2016-08-084-4/+112
| | | | | | | | | in parallel, with an alignment threshold set to be larger than the chunk size but smaller than the size of the small data aggregator. Tested: koala, ostrich (h5committest); jelly, ummon
* [svn-r30268] Remove failure causing code in test/mf.c unintentionally added ↵Neil Fortner2016-08-081-1/+1
| | | | in r30264.
* [svn-r30266] Add support for GIT to external filter accessAllen Byrne2016-08-081-17/+20
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* [svn-r30264] Fixed an issue that could occur when using H5Pset_alignment ↵Neil Fortner2016-08-082-18/+144
| | | | | | | | where a block could be unaligned, causing an assertion failure. Tested: koala, ostrich, jelly (h5committest), ummon
* [svn-r30262] Fix for HDFFV-9960: H5DOappend will not fail if a dataset has ↵Vailin Choi2016-08-052-3/+106
| | | | | | no append callback registered. Tested on mayll, platypus, osx1010test, emu, moohan, kituo, ostrich, kite, quail.
* [svn-r30259] Fixed: HDFFV-9965: HDF5 Fails to build when sizeof or c_sizeof ↵Scot Breitenfeld2016-08-051-1/+5
| | | | | | | | is not available in Fortran Added the use of 'storage_size' if 'c_sizeof' is not available. Tested (jelly, intel)
* [svn-r30254] Add missing importAllen Byrne2016-08-031-0/+1
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* [svn-r30251] Ignore dlopen test - created HDFFV-9962Allen Byrne2016-08-022-3/+2
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* [svn-r30250] Correct position of finally block for testAllen Byrne2016-08-021-16/+16
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* [svn-r30245] remove incorrect copyAllen Byrne2016-08-011-6/+0
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* [svn-r30243] Correct spellingAllen Byrne2016-08-011-1/+1
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* [svn-r30242] Cygwin does not implement the getpwuid the same as linux.Allen Byrne2016-08-011-2/+2
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* [svn-r30241] JAVA-1920: new filter for tests.Allen Byrne2016-08-011-0/+104
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* [svn-r30240] JAVA-1920: Create a filter plugin test that has a filter which ↵Allen Byrne2016-08-017-7/+176
| | | | calls a HDF5 function.
* [svn-r30238] Follow-on to HDFFV-9928: remove unconditional call of time.h ↵Allen Byrne2016-08-0111-29/+0
| | | | type headers. Also remove duplicated includes when h5private.h is used.
* [svn-r30237] HDFFV-9939: Change cmake commands to reduce POST_BUILD custom ↵Allen Byrne2016-08-0125-532/+197
| | | | commands. Fixes possible overruns on windows command lines.
* [svn-r30236] HDFFV-9928: remove duplicate and unconditional includes in ↵Allen Byrne2016-08-012-12/+6
| | | | | | h5diff_array. Also format function block in h5diff_attr to eliminate excessive whitespace
* [svn-r30235] HDFFV-9730: Fix functions for delete to use a specific dir ↵Allen Byrne2016-08-0114-14/+14
| | | | instead of a possibly uninitialized variable.
* [svn-r30232] HDFFV-9953, -9955: Add new testfiles to h5dump generator and tests.Allen Byrne2016-08-018-18/+1564
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* [svn-r30231] HDFFV-9944: else statement and braces.Allen Byrne2016-08-011-17/+24
| | | | refactored out the assert statement since H5MM_xfree allows null argument.
* [svn-r30228] Changed a few printf calls to HDprintf in file_image.c.Dana Robinson2016-07-301-4/+5
| | | | | | | Checked the return value of a read() call to clean up a warning. Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0 Autotools serial, file_image test only
* [svn-r30224] Added HDprintf() macro that uses HDfprintf w/ stdout.Dana Robinson2016-07-273-11/+13
| | | | | Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0 Autotools serial
* [svn-r30219] Description:Quincey Koziol2016-07-2233-852/+799
| | | | | | | | | More warning cleaups: down to 770 warnings (from ~940) in 134 files (from 148), with 28 unique kinds of warnings (from 31). Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)