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* [svn-r22785] HDFFV-8153: Pull POSIX_C_SOURCE define out to separate ↵Allen Byrne2012-09-1811-2/+50
| | | | | | variable. Use ADD_DEFINITIONS (${HDF5_EXTRA_C_FLAGS}) in non-fortran CMakeLists.txt folders Tested: jam with intel compilers
* [svn-r22774] The matching configure fileAllen Byrne2012-09-171-3/+18
| | | | | | | | | | | | | Use LT_PREREQ([2.2]) LT_INIT([dlopen]) instead of AC_LIBTOOL_DLOPEN AM_PROG_LIBTOOL Also add ALLOW_UNSUPPORTED on threadsafe check Both from 1.8 configure
* [svn-r22773] Use Allen Byrne2012-09-171-4/+21
| | | | | | | | | | | | LT_PREREQ([2.2]) LT_INIT([dlopen]) instead of AC_LIBTOOL_DLOPEN AM_PROG_LIBTOOL Also add ALLOW_UNSUPPORTED on threadsafe check Both from 1.8 configure
* [svn-r22772] Synch line spaces with 1.8Allen Byrne2012-09-171-0/+21
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* [svn-r22771] remove obsolete filesAllen Byrne2012-09-172-20/+0
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* [svn-r22770] Update windows release docs to match 1.8Allen Byrne2012-09-178-1759/+296
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* [svn-r22766] Snapshot version 1.9 release 129HDF Tester2012-09-1614-29/+29
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* [svn-r22765] Description:Quincey Koziol2012-09-152-154/+198
| | | | | | | | | | | | | | | | | | Propogate Coverity changes to trunk, also fix compiler warnings and other minor code cleanups. (QK & JK) r20393: (Not directly propogated, since trunk also had a similar fix) Move initialization ocrt_info.new_obj = NULL; before FUNC_ENTER_NOAPI -- gh r20397: Added free(src_sizes) --gh r20398: Added free(src_offset). --gh Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, parallel, FORTRAN & C++ (h5committest forthcoming)
* [svn-r22763] Purpose:Jonathan Kim2012-09-143-40/+29
| | | | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Fixed Daily test failed from the previous commit r22735. (ember) Also changed H5Pget_mpio_no_collective_cause() parameter type from H5D_mpio_no_collective_cause_t to uint32_t due to change to return combined bitmap value which can be not emun defined value. Tested: jam (linux32-LE), koala-pp (linux64-LE), ember, h5committest
* [svn-r22758] Description:Quincey Koziol2012-09-1321-377/+504
| | | | | | | | | | | | | Bring generic improvements from encode/decode property list branch to the trunk. This includes a better version of the property list comparison routine, cleaned up compiler warnings, and some cleaned up property list callbacks. Also, started on changes to clean up parallel test output, so that it doesn't report successful tests from each process. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, GCC 4.7.x, FORTRAN, C++, threadsafe and parallel Linux 2.6/32 (jam) w/debug Solaris 2.7/64 (linew) w/debug
* [svn-r22755] When Scot Breitenfeld committed his test function ↵Raymond Lu2012-09-121-1/+4
| | | | | | | | test_valid_path in r22078 6 months ago, he replaced test_text_type function with his function, thus skipped test_text_type test. I'm restoring it back in this checkin. Tested on jam - simple change.
* [svn-r22754] Issue 8140 - return value is missing for H5LTyyerror in ↵Raymond Lu2012-09-122-16/+27
| | | | | | | | H5LTanalyze.l. I put "return 0" in because the program should continue even though there is an error. Tested on jam - simple change.
* [svn-r22752] Update autotools macros and comment indicators.Allen Byrne2012-09-113-1316/+2174
| | | | | | Added autotools quotation around parameters h5committest
* [svn-r22751] Purpose:Jonathan Kim2012-09-1014-25/+41
| | | | | | | | | | | | HDFFV-5919 - GMQS: h5diff - The number of object difference is not consistent between dataset and group/type when attribute(s) have differences Description: Object differences are not consistent between dataset and group/datatype when their attribute(s) have differences. This is because attribute(s) differences is not accumulated to group or datatype object’s difference, but accumulated to dataset difference. To fix, do not accumulate attribute difference to dataset difference. This is referred to h5diff’s default behavior and also past report from users that users were confused by the accumulated behavior. (also can’t figure out only for dataset difference , also hard to spot dataset difference when it has lots of attributes or differences) This also lead to fix inconsistent format indicating difference between dataset and group/datatype object. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r22750] Removed check-in r22746 because it causes an error in objcopy ↵Scot Breitenfeld2012-09-102-9/+0
| | | | | | on Linew 64 byte. Will check-in again after the issue is resolved.
* [svn-r22749] Description:Dana Robinson2012-09-1010-758/+887
| | | | | | | Undo of accidental check-in of H5T code in last check-in. Tested on: jam w/ parallel enabled (revert to pre-existing code)
* [svn-r22748] Description:Dana Robinson2012-09-1011-890/+761
| | | | | | | H5FD_FLMAP_SINGLE changed to H5FD_FLMAP_DICHOTOMY in the MPI-POSIX VFD. Tested on: jam w/ parallel and fortran enabled (minor change)
* [svn-r22746] Description:Scot Breitenfeld2012-09-092-0/+9
| | | | | | | | Fix for HDFFV-7959 H5Rdereference should check for default (HADDR_UNDEF) value and not continue processing and return so that ret value can be checked and handled properly. Added fix and test, reviewed: Tested: jam (gnu, intel)
* [svn-r22745] Snapshot version 1.9 release 128HDF Tester2012-09-0914-29/+29
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* [svn-r22744] Purpose:Jonathan Kim2012-09-081-0/+4
| | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Daily test failed from the previous commit r22735. (ember) Skip tests not to disrupt other tests while finding a solution for ember.
* [svn-r22743] Purpose:Jonathan Kim2012-09-071-18/+21
| | | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Daily test failed from the previous commit r22735. (ember) Follow actual_io function to sync before go futher as this is similar function. Tested: jam (linux32-LE), koala-pp (linux64-LE), ember
* [svn-r22741] Purpose:Jonathan Kim2012-09-051-8/+4
| | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Daily test failed from the previous commit r22735. (koala , ember) Fixed failure due to not be able to read external-storage file from external test. Tested: jam (linux32-LE), koala-pp (linux64-LE)
* [svn-r22740] Correct typo on test commandAllen Byrne2012-09-051-1/+1
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* [svn-r22738] Fix for Windows and DLLEXPORT if statement.Scot Breitenfeld2012-09-051-10/+7
| | | | Tested: jam (gnu)
* [svn-r22737] Fix for HDF5 HDFFV-8109 H5S_UNLIMITED_F has a wrong typeScot Breitenfeld2012-09-054-57/+67
| | | | Tested: jam (gnu)
* [svn-r22736] Fix for HDFFV-8132: Compile problem w/NAG Fortran due to too ↵Scot Breitenfeld2012-09-051-2/+7
| | | | | | many continuation lines. Tested: jam (gnu)
* [svn-r22735] Purpose:Jonathan Kim2012-09-0412-29/+871
| | | | | | | | | | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Added H5Pget_mpio_no_collective_cause() function that retrive reasons why the collective I/O was broken during Read/Write IO access. Reasons to break collective I/O: - SET_INDEPENDENT - DATATYPE_CONVERSION - DATA_TRANSFORMS - MPIPOSIX - NOT_SIMPLE_OR_SCALAR_DATASPACES (NULL Space) - POINT_SELECTIONS - NOT_CONTIGUOUS_OR_CHUNKED_DATASET (Compact or External-Storage) - FILTERS Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r22732] Snapshot version 1.9 release 127HDF Tester2012-09-0214-29/+29
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* [svn-r22726] remove duplicate file lineAllen Byrne2012-08-301-1/+0
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* [svn-r22725] Add other h5 files needed by pbits testsAllen Byrne2012-08-301-0/+3
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* [svn-r22722] Update all references from configure.in to configure.acAllen Byrne2012-08-2810-47/+37
| | | | Tested: h5committest
* [svn-r22720] Fix RelWithDebInfo packagingAllen Byrne2012-08-2812-24/+24
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* [svn-r22718] Remove unneeded srcdir testAllen Byrne2012-08-271-5/+0
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* [svn-r22716] HDFFV-8133: Add usage text to see Reference manual for compact ↵Allen Byrne2012-08-279-153/+162
| | | | subsetting.
* [svn-r22714] one more missed VAR change for parallel examplesAllen Byrne2012-08-268-357/+12
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* [svn-r22712] Updated a missed example makefile. Tested locally with make ↵Allen Byrne2012-08-242-6/+351
| | | | installcheck (another h5committest understanding oversight)
* [svn-r22710] Remove reference to srcdir in TOOL pathAllen Byrne2012-08-231-1/+1
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* [svn-r22709] HDFFV-8129: reconfigured on jam, Remove overloading of ↵Allen Byrne2012-08-2382-752/+781
| | | | | | autotools TESTS var, rename configure.in to configure.ac, convert test scripts from hard *.sh to configure managed *sh.in files. Tested: h5committest
* [svn-r22707] Description:Quincey Koziol2012-08-226-201/+171
| | | | | | | | | | Bring back some more cleanups from the plist_encode_decode branch, clean up some formatting and compiler errors, and add a few more property comparison routines that we've skipped implementing in the past. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5committest)
* [svn-r22706] Updated autotools: autoconf 2.69, automake 1.12.3, m4 1.4.16, ↵Larry Knox2012-08-2248-2823/+5180
| | | | | | libtool 2.4.2 Tested THG machines.
* [svn-r22703] Description:Dana Robinson2012-08-212-556/+541
| | | | | | | | Propagated Windows and POSIX correctness changes from SEC2 VFD to the MPI-POSIX VFD. Fixes HDFFV-8058. Tested on: jam w/ parallel and fortran enabled
* [svn-r22700] Description:Dana Robinson2012-08-203-10/+44
| | | | | | | | Minor refactoring to extract managed object length determination. This makes the tiny, managed, and huge code work alike. Tested on: jam (very minor change, no need for full commit test)
* [svn-r22697] Snapshot version 1.9 release 126HDF Tester2012-08-1915-31/+32
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* [svn-r22694] Description:Dana Robinson2012-08-171-88/+74
| | | | | | | Minor change to consolidate odd bitmasking due to an old bugfix. Tested on: jam (very minor change)
* [svn-r22693] Add missing H5Tclose().Allen Byrne2012-08-171-1/+3
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* [svn-r22691] Purpose:Jonathan Kim2012-08-161-2/+2
| | | | | | | | | | | HDFFV-7942 - h5diff: incorrect result for comparing attribute data with different type size in same class Description: This is additional fix due to daily build fail against previous r22684. Refer to the svn -r22684 log for previous details Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), cmake (jam)
* [svn-r22684] Purpose: Jonathan Kim2012-08-1511-20/+103
| | | | | | | | | | | | Address HDFFV-7942 - h5diff: incorrect result for comparing attribute data with different type size in same class Description: When comparing attribute data values with same type class but different size, the result was incorrect. It was due to the size difference and got truncated. Fixed to match up the smaller type size to big type size like what dataset does. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r22681] Description:Quincey Koziol2012-08-1510-1071/+590
| | | | | | | | Clean up file driver property handling, along with some misc. warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, gcc 4.7.1, C++, FORTRAN & threadsafe (h5committest upcoming)
* [svn-r22679] Changed H5O_copy_search_comm_dt_check() to use H5O_obj_class() ↵Vailin Choi2012-08-141-6/+10
| | | | | | to get object type instead of H5O_get_info(...TRUE...) saving time in traversing metadata. (This is part of the checkin to 1.8 branch #22677)
* [svn-r22676] Changes needed to make the default free-list mapping from ↵Vailin Choi2012-08-1318-169/+708
| | | | H5FD_FLMAP_SINGLE to H5FD_FLMAP_DICHOTOMY.
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