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* [svn-r17838] Description:Quincey Koziol2009-11-0520-577/+941
| | | | | | | | | | | | | | | | | | | | | | | | | Further refactoring of v2 B-tree code, moving toward being able to pass a context information to a client's encode/decode callbacks. Also, clean up of other minor compiler warnings and code formatting issues. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17835] Maintenance: More cleanup in the configuration table.Elena Pourmal2009-11-051-7/+2
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* [svn-r17834] Maintenance: Updated system information for Solaris and Mac IntelElena Pourmal2009-11-051-7/+8
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* [svn-r17832] Bug fix:(sort of)Albert Cheng2009-11-042-3/+6
| | | | | | | | | | | | Some systems, like AIX poe, interpret exit(134) the same as if the process has really been interrupted by the abort signal and prints extra messages that confuse test script which is looking for matching output. Solution: Changed it to exit(6) which still has the "appearance" of an abort signal which carries the value of 6 in Unix systems. Tested: LLNL Up both serial and Parallel.
* [svn-r17819] Purpose:Mike McGreevy2009-11-041-13/+11
| | | | | | | | | | | | Updating RELEASE.txt Description: Clarifying explanation of --enable-static-exec behavior. Tested: Doc only, none needed.
* [svn-r17818] Removed Zeus and ubgl entries since they were not tested any more.Albert Cheng2009-11-041-3/+4
| | | | Added AIX known problem of testcheck_version.sh failure.
* [svn-r17813] Description:Quincey Koziol2009-11-031-1/+1
| | | | | | | Correct 'src' to 'dst' in error message for H5D_read. (Bz#1683) Tested on: Eyeballed only - too minor to require h5committest
* [svn-r17811] Update RELEASE.txt for fractal heap filtering changes (r17623)Neil Fortner2009-11-031-0/+4
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* [svn-r17810] Corrected expected output text file to match actual output. ↵Allen Byrne2009-11-032-7/+7
| | | | | | (Verified to linux output). Corrected solution file type to not try to build .exe the solution name.
* [svn-r17805] corrected examples test batch filesAllen Byrne2009-11-022-109/+15
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* [svn-r17801] Added known problem of h5repack in AIX -q32 platform.Albert Cheng2009-11-021-0/+7
| | | | (forgot to add the text in the last commit.)
* [svn-r17800] Removed support and known problems of the IRIX, IRIX64 and ↵Albert Cheng2009-11-021-37/+0
| | | | | | | Tungsten platforms since they have retired. Added known problem of h5repack in AIX -q32 platform.
* [svn-r17785] Description:Quincey Koziol2009-10-2912-313/+589
| | | | | | | | | | | | | | | | | | | | | | | | | | Further refactor v2 B-tree code to bring it closer to modern data structure designed in the library, mainly by introducing a H5B2_t type so that the v2 B-tree could be held open, but not require the B-tree header to be protected the whole time. A few other minor tweaks as well. Also, remove unused 'dirty' flag from fractal heap header. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17778] Description:Quincey Koziol2009-10-281-2/+2
| | | | | | | | Make check for NULL dataspace a bit safer. Tested on: FreeBSD/32 6.3 (duty) (too minor for h5committest)
* [svn-r17775] Purpose:Mike McGreevy2009-10-283-3/+3
| | | | | | | | | | | | | | h5cc link-line reordering Description: Re-ordered flags in h5cc such that LDFLAGS appears after hdf5 library include path. This is to ensure third party library locations don't interfere with locating the correct version of hdf5 library. Tested: passed daily tests in 1.8 branch (as verified by Larry just now).
* [svn-r17771] Add bug number to note in RELEASE.txt.Neil Fortner2009-10-281-1/+1
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* [svn-r17770] Bug 1264 fixed.Albert Cheng2009-10-281-1/+89
| | | | | | | | | Tests to verify the bug fixed are installed. Test: v1.8.4 passed all tests on Jam (default and with --disable-depreacted-symbol), Amani (v16API), Linew (default). This should be good for trunk version too.
* [svn-r17764] Purpose: Fix bug 1483Neil Fortner2009-10-284-14/+159
| | | | | | | | | | | | Description: H5HG_load made improper assumptions about the ordering of object indices, namely that they are in order. Not only is this not guaranteed by the file format spec, but this condition can be violated if id's "wrap around" which can happen when overwriting VL data. H5HG_load has been fixed to handle any order of indices. Also fixed some other bugs involving allocation of global heaps in memory. Tested: jam, linew, amani (h5committest)
* [svn-r17763] Minor formatting change in RELEASE.txt.Neil Fortner2009-10-271-1/+1
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* [svn-r17760] Purpose: Fix problem with H5TB APINeil Fortner2009-10-276-278/+390
| | | | | | | | | | | Description: The H5TB API makes some improper assumptions about the order of compound datatype members. Namely, it assumes that members remain in the order in which they were inserted. Unfortunately, this assumption is inherent in the design of the interface. The library has been patched so that this assumption holds in situations relevant to H5TB. Tested: jam, linew, amani (h5committest)
* [svn-r17758] Remove .NET references from windows text files and batch filesAllen Byrne2009-10-276-270/+43
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* [svn-r17755] Purpose: Fix assertion failure caused by H5Tcommit1/2Neil Fortner2009-10-272-4/+15
| | | | | | | | | Description: Calling H5Tcommit_anon on a file with read only access would cause an assertion failure. Added a check to H5T_commit to return a failure in this case. Removed redundant check in H5T_commit_named. Tested: Fedora 11 (very minor change)
* [svn-r17751] Purpose: Fix assertion failure caused by H5Tcommit1/2Neil Fortner2009-10-273-4/+47
| | | | | | | | | Description: Calling H5Tcommit1 or H5Tcommit2 on a file with read only access would cause an assertion failure. Added a check to H5T_commit_named to return a failure in this case. Also a minor fix in the link_filters test. Tested: Fedora 11 (very minor change)
* [svn-r17749] Description:Quincey Koziol2009-10-278-114/+212
| | | | | | | | | | | | | | | | | | | | Refactor v2 B-tree code to bring it further in line with how the fractal heap code works, to make forthcoming modificaions easier. Also minor tweaks to the fractal heap code to clean it up a bit more also. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r17742] Snapshot version 1.9 release 50HDF Tester2009-10-2514-29/+29
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* [svn-r17740] Description:Quincey Koziol2009-10-2418-253/+263
| | | | | | | | | | | | | | | | | | | | | | | Refactor v2 B-tree code to take creation parameters to H5B2_create() as a struct (instead of individual arguments), call the client's class "cls" instead of "type" internally, and add client class name to client class struct. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17737] Description:Quincey Koziol2009-10-231-1/+7
| | | | | | | | | Fix error in dataset's chunk index v1 B-tree debugging code to correctly pass userdata down to B-tree cache load routine. Tested on: Linux 2.4/64 (chicago1) (too minor to require h5committest)
* [svn-r17736] mf.c test commented out. Assert hangs daily tests.Allen Byrne2009-10-231-1/+2
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* [svn-r17731] Correct batch file typoAllen Byrne2009-10-231-1/+1
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* [svn-r17726] Updated the errorlevel checking for better error handling in ↵Allen Byrne2009-10-2212-59/+164
| | | | the windows batch files.
* [svn-r17724] Merge change from 1.8 branch to trunk that removes ↵Larry Knox2009-10-222-3/+3
| | | | | | -D_POSIX_SOURCE from CPPFLAGS in h5cc. Tested: amani, jam, linew (h5committest).
* [svn-r17723] Bug fix:Albert Cheng2009-10-221-2/+3
| | | | | | | | | | The file failed to compiled in AIX which flags syntax error. Fixed by making the statements more explicitly compare with NULL and added a missing trailing semi-colon. Tested: Tested in AIX (Up at LLNL) only. The changes are trivial and should be portable to all platforms.
* [svn-r17722] Added tcheckversion windows project filesAllen Byrne2009-10-221-0/+2
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* [svn-r17721] Added new files:Allen Byrne2009-10-227-0/+860
| | | | | tlinks.cpp, tcheck_version.c and tcheckversion projects
* [svn-r17716] Cosmetic change to use exit(EXIT_FAILURE) instead of exit(1).Albert Cheng2009-10-212-4/+4
| | | | Tested: jam-pp.
* [svn-r17715] Fixed to exit failure if no command option is given.Albert Cheng2009-10-211-1/+1
| | | | Tested: Jam
* [svn-r17703] Bug fix: (1192)Albert Cheng2009-10-214-30/+32
| | | | | | | Changed exit(1) to exit(EXIT_FAILURE) and exit(0) to exit(EXIT_SUCCESS) for better coding. Tested: jam.
* [svn-r17700] Bug fix: (1192)Albert Cheng2009-10-211-19/+19
| | | | | | | | Comment says Error exit code is -1 but actual code use 1. Changed it to EXIT_FAILURE (1) and exit(0) to exit(EXIT_SUCCESS) for better coding. Tested: jam.
* [svn-r17697] Bug fix: (1192)Albert Cheng2009-10-202-3/+3
| | | | | | | | Error exit code of -1 is illegal (exit code is unsigned). Changed it to EXIT_FAILURE (1). Also changed exit(0) to exit(EXIT_SUCCESS) for better coding. Tested: jam.
* [svn-r17693] Removed the erroneous test of using v16 API.Albert Cheng2009-10-201-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | The error started out as an erroneous test of using v16 API via source code. (See bug 1264). It was implemented as: #include "hdf5.h" #define H5_USE_16_API That was incorrect and generated warnings in Linux but error in AIX for redefining macro H5_USE_16_API. I corrected it yesterday to pass AIX by moving H5_USE_16_API up as: #define H5_USE_16_API #include "hdf5.h" This is the proper way to turn on v16API and it passes all normal tests. I knew it would not work if somehow v16API is disabled but hoping it can be fixed later. Well, it broke last night under --disable-deprecated-symbols. Removed the #define H5_USE_16_API and let Raymond fix it after the release.
* [svn-r17692] Description:Binh-Minh Ribler2009-10-201-0/+1
| | | | Added c++/test/tlinks.cpp
* [svn-r17690] Purpose: Code improvementBinh-Minh Ribler2009-10-207-85/+800
| | | | | | | | | | | | | | Description: Fixed CommonFG::getComment and CommonFG::getLinkval to provide default values for buffer size to improve usability. Added test file tlinks.cpp, which only contains test for getLinkval and will expand when C++ wrappers for H5L functions are implemented. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r17688] Merge make local copy of svn test data files for write access ↵Larry Knox2009-10-206-140/+91
| | | | | | | from v1.8 to trunk. Tested: amani, jam, linew (h5committest).
* [svn-r17685] Bug fix:Albert Cheng2009-10-201-1/+1
| | | | | | | | | | | #define H5_USE_16_API was inserted AFTER #include <hdf5.>, too late was it to take effect. Instead, it caused a macro redefinition, flagged as an error by AIX. Fixed by moving it before the <hdf5.h>. Tested: Jam.
* [svn-r17680] Use absolute comparison for use-system-epsilon and default option.Peter Cao2009-10-191-2/+2
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* [svn-r17675] Purpose:Mike McGreevy2009-10-192-37/+67
| | | | | | | | | | | | | Configure Cleanup Description: Make all AM_CFLAGS visible in CFLAGS during configure so all checks have full visibility of any set flags. Tested: h5committest
* [svn-r17671] Removed these two options from the fortran flags:Albert Cheng2009-10-181-2/+2
| | | | | | | | | -qmoddir=. because -qmoddir defaults to current directory already. -static because it is not mentioned in "man xlf". Don't know it was a typo or just an obsoleted option. Removing both of them produced no ill or visible effects. Tested: Up of LLNL
* [svn-r17670] Snapshot version 1.9 release 49Larry Knox2009-10-1814-29/+29
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* [svn-r17667] Bug 1656 fix:Albert Cheng2009-10-181-3/+22
| | | | | | | | added a signal handler to the tcheck_version to intercept the abort signal from H5check_version. Some systems would prints extra messages and/or core dump if the abort signal is not handled. This eliminates those unwanted side effect. Tested: h5committested.
* [svn-r17663] Purpose:Mike McGreevy2009-10-163-469/+31
| | | | | | | | | | | | | | | | | | | | | | | | | | | configure cleanup Description 1. Removed check that disables shared libraries when pgcc is used. Apparently they previously did not work with libtool 1.5.14 and on mir, neither of which is in use anymore. Testing on jam and amani appear fine, so this check is unnecessary. 2. Removed check that disables shared C++ libraries when -xarch is used to enable 64 bit mode. We now use m64 flag to build 64 bit binaries, so we shouldn't explicitly disable shared C++ libraries if -xarch is discovered. 3. Removed old configure output summary section from configure.in, since we now use the libhdf5.settings file. 4. Updated powerpc-ibm-aix5.x config file to once again put c99 flag into H5_CFLAGS (and thus NOT get into h5cc), as decided in our dev meeting. Tested: h5committest full build with pgcc on jam / amani
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