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* Checkin for new shutting down free-space manager.Vailin Choi2019-06-2021-729/+448
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* Merge pull request #6 in ~VCHOI/my_third_fork from develop to ↵Vailin Choi2019-06-19172-4765/+7460
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | bugfix/new_shutdown_fsm * commit 'ca1ee7fae118c8d4137b1b5efe57660d2e0ff9b1': (64 commits) Fix memory leak in objcopy test after H5Aread of vlen data HDFFV-10616 add h5fc script Fixed a problem in the ohdr test where hard-coded strings passed to H5Awrite() triggered -fsanitize failures. Yanked qsort assert Switched to HGOTO_DONE() in the links code. Updated the HDqsort() macro to ensure we don't pass NULL buffers to qsort(3) in the future. Fixed a bug in the links code where iterating over an empty group would pass a NULL pointer to qsort(3), which is undefined behavior. Reset the other convenience pointer because why no Fixed a memory bug where a pointer is used after it's been freed. fixed pass_through vol HDFFV-10805 Add option to only build shared targets Fixed a warning in H5CX.c concerning incorrect use of freeing VOL connector info. Add H5S_SEL_ITER_SHARE_WITH_DATASPACE selection iterator creation flag, to share dataspace's selection with iterator (and with caution about not modifying or closing the dataspace while the iterator is open). Added a warning summary script for gcc to bin Fix misc. typos, etc. from code review Fixed problem with H5Fdelete "test" and split VFD. New hyperslab selection routines and new public selection iterator routines. Added the creation and use of an attribute access property list to testhdf5. Update MANIFEST for move of h5cc.in and h5redeploy.in to bin directory. Added missing DELETE enum value. ...
| * Merge pull request #1753 in HDFFV/hdf5 from ↵Jerome Soumagne2019-06-191-1/+27
| |\ | | | | | | | | | | | | | | | | | | ~JSOUMAGNE/hdf5:topic_fix_objcopy_leak to develop * commit '552cc1b4a4d1757d64f1b930135e0320a10ce8ce': Fix memory leak in objcopy test after H5Aread of vlen data
| | * Fix memory leak in objcopy test after H5Aread of vlen dataJerome Soumagne2019-06-191-1/+27
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| * | Merge pull request #1751 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-06-191-0/+50
| |\ \ | | | | | | | | | | | | | | | | * commit '9397d67d91eb628b3b9096501cdab0a33335564c': HDFFV-10616 add h5fc script
| | * \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-06-191-26/+28
| | |\ \ | | |/ / | |/| | | | | | | | | | * commit 'b9ec6a6400a556b1250c249e158c4fffafccd550': fixed pass_through vol
| * | | Merge pull request #1746 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2019-06-191-26/+28
| |\ \ \ | | |_|/ | |/| | | | | | | | | | * commit 'a67c578e4b9275fa12b427b6e13021536838a448': fixed pass_through vol
| | * | fixed pass_through volM. Scot Breitenfeld2019-06-181-26/+28
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| | | * HDFFV-10616 add h5fc scriptAllen Byrne2019-06-191-0/+50
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| * | Merge pull request #1750 in HDFFV/hdf5 from ↵Dana Robinson2019-06-192-203/+151
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:ohdr_test_memory_issue to develop * commit '6a1e9a1fbe9606d0dd3452092cab17794e131e64': Fixed a problem in the ohdr test where hard-coded strings passed to H5Awrite() triggered -fsanitize failures.
| | * | Fixed a problem in the ohdr test where hard-coded strings passedDana Robinson2019-06-192-203/+151
| | | | | | | | | | | | | | | | to H5Awrite() triggered -fsanitize failures.
| * | | Merge pull request #1748 in HDFFV/hdf5 from ↵Dana Robinson2019-06-182-5/+26
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:links_iterate_zero_bug to develop * commit '0a75da70a61d41a0bf20a5c617f3eb678ed0b103': Yanked qsort assert Switched to HGOTO_DONE() in the links code. Updated the HDqsort() macro to ensure we don't pass NULL buffers to qsort(3) in the future. Fixed a bug in the links code where iterating over an empty group would pass a NULL pointer to qsort(3), which is undefined behavior.
| | * | | Yanked qsort assertDana Robinson2019-06-181-1/+1
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| | * | | Switched to HGOTO_DONE() in the links code.Dana Robinson2019-06-181-1/+4
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| | * | | Updated the HDqsort() macro to ensure we don't pass NULL buffers toDana Robinson2019-06-181-1/+1
| | | | | | | | | | | | | | | | | | | | qsort(3) in the future.
| | * | | Fixed a bug in the links code where iterating over an empty group wouldDana Robinson2019-06-182-5/+23
| | |/ / | | | | | | | | | | | | | | | | | | | | pass a NULL pointer to qsort(3), which is undefined behavior. Fixes HDFFV-10829
| * | | Merge pull request #1745 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:develop to ↵Allen Byrne2019-06-1884-3720/+2530
| |\ \ \ | | |/ / | |/| | | | | | | | | | | | | | | | | | develop * commit '6cd728796dee1cbc5b1fdf28900b23b7a6870b67': HDFFV-10805 Add option to only build shared targets
| | * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-06-181-6/+10
| | |\ \ | | |/ / | |/| | | | | | | | | | | | | | * commit '10535e0376d88e218cab782322bfc06f35835f31': Reset the other convenience pointer because why no Fixed a memory bug where a pointer is used after it's been freed.
| * | | Merge pull request #1747 in HDFFV/hdf5 from ↵Dana Robinson2019-06-181-6/+10
| |\ \ \ | | |_|/ | |/| | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:vds_memory_bug to develop * commit '8d67b440f7d94f1b191ce154a41685bcaa90fd12': Reset the other convenience pointer because why no Fixed a memory bug where a pointer is used after it's been freed.
| | * | Reset the other convenience pointer because why noDana Robinson2019-06-181-6/+7
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| | * | Fixed a memory bug where a pointer is used after it's been freed.Dana Robinson2019-06-181-6/+9
| | | | | | | | | | | | | | | | This is going to need a release note when it's moved to 1.10.
| | | * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-06-1813-21/+1829
| | | |\ | | |_|/ | |/| | | | | | | | | | | | | | | | | | | | | | * commit '712a2a13d8add828d053135a172abb2e819d59ad': Fixed a warning in H5CX.c concerning incorrect use of freeing VOL connector info. Add H5S_SEL_ITER_SHARE_WITH_DATASPACE selection iterator creation flag, to share dataspace's selection with iterator (and with caution about not modifying or closing the dataspace while the iterator is open). Fix misc. typos, etc. from code review New hyperslab selection routines and new public selection iterator routines.
| * | | Merge pull request #1744 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:H5CX_warning ↵Dana Robinson2019-06-181-11/+2
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '579793a7acebcb22d1adc2421a6c1b99618f3ee9': Fixed a warning in H5CX.c concerning incorrect use of freeing VOL connector info.
| | * | | Fixed a warning in H5CX.c concerning incorrect use of freeingDana Robinson2019-06-181-11/+2
| | |/ / | | | | | | | | | | | | VOL connector info.
| * | | Merge pull request #1740 in HDFFV/hdf5 from merge_hyperslab_04 to developQuincey Koziol2019-06-1812-10/+1827
| |\ \ \ | | |/ / | |/| | | | | | | | | | | | | | | | | | * commit 'd20139399750246f55c902940987e0048a40c268': Add H5S_SEL_ITER_SHARE_WITH_DATASPACE selection iterator creation flag, to share dataspace's selection with iterator (and with caution about not modifying or closing the dataspace while the iterator is open). Fix misc. typos, etc. from code review New hyperslab selection routines and new public selection iterator routines.
| | * | Merge branch 'develop' into merge_hyperslab_04Quincey Koziol2019-06-182-0/+485
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| | * | Add H5S_SEL_ITER_SHARE_WITH_DATASPACE selection iterator creation flag, toQuincey Koziol2019-06-175-178/+217
| | | | | | | | | | | | | | | | | | | | share dataspace's selection with iterator (and with caution about not modifying or closing the dataspace while the iterator is open).
| | * | Fix misc. typos, etc. from code reviewQuincey Koziol2019-06-172-20/+20
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| | * | Merge branch 'develop' into merge_hyperslab_04Quincey Koziol2019-06-177-6/+106
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| | * | | New hyperslab selection routines and new public selection iterator routines.Quincey Koziol2019-06-1612-10/+1788
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| | | | * HDFFV-10805 Add option to only build shared targetsAllen Byrne2019-06-1884-3720/+2530
| | |_|/ | |/| | | | | | | | | | | | | | HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static HDFFV-10803 Update FindSZIP.cmake find module Remove unneeded modules and update java modules
| * | | Merge pull request #1743 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:warnhist to ↵Dana Robinson2019-06-172-0/+485
| |\ \ \ | | |_|/ | |/| | | | | | | | | | | | | | | | | | develop * commit '72dd01b76bf0f521b95fc3ed10b5c305f7445fc6': Added a warning summary script for gcc to bin
| | * | Added a warning summary script for gcc to binDana Robinson2019-06-172-0/+485
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| * | Merge pull request #1729 in HDFFV/hdf5 from ↵Vailin Choi2019-06-177-5/+105
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-10800-h5ocopy-failure to develop * commit 'dfdc27b04b2e8bcd1985ba90ce6553d8b3805fda': Fix release notes based on feedback from pull request. Fix for HDFFV-10800 H5Ocopy failure: The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format version bounds array for fill value message, should be version 3 not 2.
| | * | Fix release notes based on feedback from pull request.Vailin Choi2019-06-141-7/+9
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| | * | Fix for HDFFV-10800 H5Ocopy failure:Vailin Choi2019-06-127-5/+103
| | | | | | | | | | | | | | | | | | | | The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format version bounds array for fill value message, should be version 3 not 2.
| * | | Merge pull request #1741 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to ↵Dana Robinson2019-06-161-1/+1
| |\ \ \ | | |_|/ | |/| | | | | | | | | | | | | | | | | | develop * commit 'dbad1589008e2ef9e713c712ca5ffbf7c97159d0': Fixed problem with H5Fdelete "test" and split VFD.
| | * | Fixed problem with H5Fdelete "test" and split VFD.Dana Robinson2019-06-161-1/+1
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| * | Merge pull request #1739 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:aapl_test to ↵Dana Robinson2019-06-151-49/+60
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | develop * commit 'ad168f5a7a08f6afd9ee506ce7c884fff994002a': Added the creation and use of an attribute access property list to testhdf5.
| | * | Added the creation and use of an attribute access property list toDana Robinson2019-06-151-49/+60
| | | | | | | | | | | | | | | | testhdf5.
| * | | Merge pull request #1738 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2019-06-152-218/+4
| |\ \ \ | | |/ / | |/| | | | | | | | | | * commit '6c3f90ae222a8d4e8d8edf172a6745028209b75c': Update MANIFEST for move of h5cc.in and h5redeploy.in to bin directory.
| | * | Update MANIFEST for move of h5cc.in and h5redeploy.in to bin directory.Larry Knox2019-06-152-218/+4
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| * | | Merge pull request #1713 in HDFFV/hdf5 from ↵Dana Robinson2019-06-158-482/+620
| |\ \ \ | | |/ / | |/| | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:vol_dev_headers to develop * commit '9ef56483f6447b60cf7568e2022aa5d8f193427c': Added missing DELETE enum value. Split VOL connector routines into separate headers: * H5VLconnector.h for terminal connector things * H5VLconnector_passthru.h for passthrough connector things
| | * | Merge branch 'develop' into vol_dev_headersDana Robinson2019-06-148-30/+278
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| * | | Merge pull request #1736 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2019-06-148-30/+278
| |\ \ \ | | | | | | | | | | | | | | | | | | | | * commit '04dc4ef436b087cfc45030b9183386598d1b4bae': Moved h5cc.in and h5redeploy.in from tools/misc to bin directory. They should always be built and installed whether tools are enabled or disabled. Also added Makefile.am to bin to build h5redeploy and to install and uninstall them. h5cc is created from h5cc.in by configure.
| | * \ \ Merge branch 'develop' of ↵Larry Knox2019-06-1413-12/+202
| | |\ \ \ | | | | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop
| | * | | | Moved h5cc.in and h5redeploy.in from tools/misc to bin directory. TheyLarry Knox2019-06-148-30/+278
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | should always be built and installed whether tools are enabled or disabled. Also added Makefile.am to bin to build h5redeploy and to install and uninstall them. h5cc is created from h5cc.in by configure.
| | | | * | Added missing DELETE enum value.Dana Robinson2019-06-141-1/+2
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| | | | * | Merge branch 'develop' into vol_dev_headersDana Robinson2019-06-141-1/+1
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| * | | | | Merge pull request #1737 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2019-06-141-1/+1
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'a0f9e97769e1aa4890b1481182f55b8373d431fa': fixed linked library for testing
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