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* [svn-r16041] Description:Quincey Koziol2008-11-071-53/+78
| | | | | | | | | | | | | | | | | | | | | Minor cleanups of new testing code. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r16040] Description:Quincey Koziol2008-11-071-130/+606
| | | | | | | | | | | | | | | | | | | | | More tests for extensible arrays. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r16036] Purpose: add H5Iis_valid functionNeil Fortner2008-11-054-4/+132
| | | | | | | | | Description: H5Iis_valid function added. This function checks if the id is valid (i.e. it is currently registered and visible to the application), and returns TRUE if it is valid, or FALSE otherwise. It should never return an error. Tested: kagiso, linew, smirom (h5committest)
* [svn-r16030] updated some comments regarding a function change regarding ↵Pedro Vicente Nunes2008-11-041-9/+6
| | | | | | | | | | h5diff return value (not done for 1.8) * Pedro Vicente, pvn@hdfgroup.org, Nov 4, 2008 * Compare the graph and make h5diff return 1 for difference if * 1) the number of objects in file1 is not the same as in file2 * 2) the graph does not match, i.e same names (absolute path) * 3) objects with the same name are not of the same type
* [svn-r16024] For scalar string datasets print the character position when a ↵Pedro Vicente Nunes2008-11-044-602/+745
| | | | | | difference is found instead of a non-existing array position Tested: windows
* [svn-r16020] Purpose: Fix behaviour of H5OvisitNeil Fortner2008-11-033-0/+92
| | | | | | | Description: H5Ovisit and H5Ovisit by name will now check for a positive return value from the first callback. Test added for this case. Tested: kagiso
* [svn-r16018] Snapshot version 1.9 release 21HDF Tester2008-11-028-21/+21
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* [svn-r16012] Bug fixPedro Vicente Nunes2008-10-311-5/+9
| | | | | | | When -b was requested and no -o (file name) binary output was made to stdout Had a check after command line parsing to verify if -o is present, otherwise exit Tested: windows, linux
* [svn-r16006] Modify the commit of r15943 for H5_USE_16_API. Let H5version.h ↵Raymond Lu2008-10-305-14/+27
| | | | | | check if H5_USE_16_API_DEFAULT is defined by the configure. Then define H5_USE_16_API and use it throughout. Tested on kagiso - supposed to be simple.
* [svn-r16004] h5import: TEXTFPE (scientific format) was deprecated. Use TEXTFP Pedro Vicente Nunes2008-10-301-3/+2
| | | | + instead (PVN - 2008/10/30)
* [svn-r16001] h5diff: return 1 for file differences when both file graphs ↵Pedro Vicente Nunes2008-10-301-0/+2
| | | | | | differ by any object. + Error return code was changed to 2 from -1. (PVN - 2008/10/30)
* [svn-r16000] h5dump: binary output defaults to NATIVE Pedro Vicente Nunes2008-10-301-0/+3
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* [svn-r15997] Merge from 1.8Pedro Vicente Nunes2008-10-301-0/+6
| | | | | | Added a definition of HDftruncate for windows to compile with VC6 and later versions Tested: windows
* [svn-r15993] Pedro Vicente Nunes2008-10-291-186/+45
| | | | | | Merge with 1.8 rev 15985 reorganized the code to deal with deprecated -i -o for in/out files to avoid duplicated code Tested: linux
* [svn-r15992] Merge with 1.8 rev 15973Pedro Vicente Nunes2008-10-291-1/+4
| | | | | make -b accept both MEMORY and NATIVE Tested: linux
* [svn-r15991] Merge with 1.8 rev 15969Pedro Vicente Nunes2008-10-294-53/+92
| | | | | | | | | | | | | | | Introduced a new feature in the tools library regarding command line parsing In the definition of arguments, an "*" means that the switch can or can not have an optional argument. This "*" is put in the code regarding the letter definition, and it is transparent to the user (e.g b* instead of the previous b: ), where ":" notes a required argument after the letter (and no ":" or "*" notes no argument, mandatory) Used for the h5dump binary option -b It can be now 1) -b (defaults to NATIVE) 2) - b NATIVE 3) - b FILE 4) -b LE 5) -b BE Note: the keyword NATIVE replaces MEMORY This feature (-b with no argument) was tested with the sequence of h5dump to binary (NATIVE) then h5import to generate an HDF5 file from the binary file and h5diff to compare the 2 HDF5 files Tested: linux
* [svn-r15990] Merge with 1.8 rev 15967Pedro Vicente Nunes2008-10-291-4/+18
| | | | | | regarding the return value of h5diff (0, no difference in files, 1 difference ) objects with the same name must be of the same type tested: linux
* [svn-r15989] Merge with 1.8 up to rev 15945Pedro Vicente Nunes2008-10-293-74/+11
| | | | | | Regarding use of unsigned long long print format Tested: linux
* [svn-r15988] Merge with 1.8 up to rev 15871Pedro Vicente Nunes2008-10-294-22/+94
| | | | | | Regarding h5diff, h5copy Tested: linux
* [svn-r15987] Merge with 1.8 rev 15871Pedro Vicente Nunes2008-10-2921-125/+53
| | | | | | Eliminate -c option and make that behavior the default and return 2 instead of -1 on error status tested: linux
* [svn-r15983] Description:Quincey Koziol2008-10-282-4/+4
| | | | | | | Remove redundant check for 1.6 default API. Tested on: Eyeballed - very trivial
* [svn-r15979] some test files from rev 15866 from 1.8 branch Pedro Vicente Nunes2008-10-283-0/+2
| | | | tested: linux
* [svn-r15978] remove h5diff -c mention and add long double mentionPedro Vicente Nunes2008-10-281-2/+1
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* [svn-r15977] merge rev 15866 from 1.8 branch into trunk (diffs for unsigned ↵Pedro Vicente Nunes2008-10-285-456/+889
| | | | | | long long) tested: windows, linux
* [svn-r15968] Correct some minor syntax errors in the checkin #15943.Raymond Lu2008-10-272-4/+4
| | | | Tested with h5committest.
* [svn-r15965] Purpose: Mention Windows bugfix in release documentScott Wegner2008-10-271-0/+3
| | | | | Description: In June, we discovered a bug in Windows which only affected specific timezones with the mtime test. This bug was promptly fixed, but never documented. This checkin adds a note to the release document.
* [svn-r15961] Description:Binh-Minh Ribler2008-10-271-19/+11
| | | | | | | | Fixed some typos and replaced free/HDfree and malloc/HDmalloc. Platforms tested: Linux 2.6 (kagiso) SunOS 5.10 (linew)
* [svn-r15959] Description:Binh-Minh Ribler2008-10-2712-100/+263
| | | | | | | | | | | | Added missing wrappers for H5Rdereference. Also, for these wrappers, improved exception handlings to report specific overloaded functions, where failure occurs. Will do the same for more functions later... Platforms tested: Linux 2.6 (kagiso) SunOS 5.10 (linew) FreeBSD (duty)
* [svn-r15957] Revised the help page of h5perf.Christian Chilan2008-10-261-27/+49
| | | | Tested on kagiso.
* [svn-r15953] Snapshot version 1.9 release 20HDF Tester2008-10-269-24/+24
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* [svn-r15952] Fix Bug 1300.Albert Cheng2008-10-261-26/+21
| | | | | | | Removed duplicated information due to previous incompleted changes. Also rearranged the entries to a more logical combinations. Tested: h5committest.
* [svn-r15947] Purpose: Bug FixMike McGreevy2008-10-242-4/+14
| | | | | | | | | | Description: Adding the SZIP path to LD_LIBRARY_PATH within configure was inadvertently blowing away anything already in LD_LIBRARY_PATH. This fixes that, which solves, among other things, the problem where configure failed to learn how to print 'long long' on cobalt. Tested: full make check install: kagiso, smirom configure / make / h5ls test only : cobalt, linew
* [svn-r15944] A follow-up checkin for the last-round commit(r15943). Added a ↵Raymond Lu2008-10-241-0/+1
| | | | | | | | | test in this script file to check whether the macros H5_USE_16_API works properly. There used to be a problem to compile if H5_USE_16_API is defined in the application program (see bug #1264). Tested on kagiso - simple change.
* [svn-r15943] Changed the library's macros H5_USE_16_API to ↵Raymond Lu2008-10-2410-23/+23
| | | | | | | | | H5_USE_16_API_DEFAULT avoid possible conflict wi th user's definition of H5_USE_16_API. The H5_USE_16_API_DEFAULT is defined through configure with the flag --with-default-api-version=v16. Tested with h5committest.
* [svn-r15942] Purpose: Bug Fixes and Libtool UpgradeMike McGreevy2008-10-2451-1358/+2510
| | | | | | | | | | | | | | | | | | Description: - Remove need to set LD_LIBRARY_PATH when using shared szip library. - Libtool 2.2.6a is now used to generate libraries. - 'make check install' dependency bug is fixed, and should no longer break the build. - removed hard coding of shell in config/commence.am, as this causes problems on Solaris with the new version of libtool. - RELEASE.txt with appropriate changes. Tested: - kagiso, smirom, linew (merged from 1.8, pretty quick tests)
* [svn-r15941] Purpose: Close bug 1305.Neil Fortner2008-10-243-5/+349
| | | | | | | | | Description: Added a new function, H5O_alloc_shrink_chunk, which removes all null messages from a chunk and shrinks the chunk appropriately. Modified H5O_merge_null to call this function when a null message is created with a size >= 64k. Tests added for this functionality. Tested: kagiso (h5committest on 1.8 version)
* [svn-r15937] Description:Quincey Koziol2008-10-231-45/+46
| | | | | | | | | | | | | | | | | | | | | | Correct error in metadata accumulator code which wasn't expanding the metadata accumulator when adjoining (but not overlapping) I/O writes occurred. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15920] Updated with the information of the removal of ↵Albert Cheng2008-10-211-0/+2
| | | | libhdf5_fortran.settings.
* [svn-r15913] Bug fix: #933Albert Cheng2008-10-216-72/+18
| | | | | | | The information of libhdf5_fortran.settings are all included in libhdf5.settings now. Remove it from the source. Tested: kagiso with fortran and C++.
* [svn-r15905] Purpose: Remove old source files from WindowsScott Wegner2008-10-202-26/+24
| | | | | | | | Description: The source file H5fortran_flags.f90 was recently removed as their symbols were consolidated into the H5E module. We were still referencing the files in Windows, and causing errors. This checkin completely removes references of H5fortran_flags.f90 from Windows. Tested: Vs2005 on WinXP
* [svn-r15904] Purpose: Add new h5dump test to WindowsScott Wegner2008-10-201-0/+4
| | | | | | | | Description: Two new test cases for h5dump were recently added to the test script on Unix. This checkin also adds the new cases to Windows. Tested: VS2005 on WinXP
* [svn-r15903] Purpose: Fix Windows compiler errorScott Wegner2008-10-201-4/+5
| | | | | | | | Description: Visual Studio compiler was complaining because variables were declared mid-function, when they should be declared at the top. This checkin simply moves the declarations to the top. Tested: Simple edit, VS2005 only
* [svn-r15886] Purpose: Close bug 1332Neil Fortner2008-10-1624-107/+541
| | | | | | | | | Description: Improved external link traversal of h5dump. h5dump will now properly avoid all cycles, even those spanning multiple files. Improvement to the output of committed datatypes. Committed datatypes are now checked for uniqueness (like other objects). Tests added for these cases. Tested: kagiso, linew, smirom (h5committest)
* [svn-r15880] Description:Scot Breitenfeld2008-10-151-1/+0
| | | | Moved the H5E fortran flags contained in H5fortran_flags.f90 to the H5E fortran Module (H5Eff.f90), so H5fortran_flags.f90 is no longer needed.
* [svn-r15879] Description:Scot Breitenfeld2008-10-154-167/+145
| | | | Moved the H5E flags from H5fortran_flags.f90 into the H5E module, we therefore don't need H5fortran_flags.f90.
* [svn-r15868] Description:Quincey Koziol2008-10-1521-2299/+2214
| | | | | | | | | | | | | | | | | | | | | | | | | | | Correct a minor error in file free space allocation which was affecting the 'multi' VFD and preventing some tests from fully working with it. Wholesale revisitation of all the places where tests were disabled with various VFDs and remove or correct all these so that _only_ the tests which _really_ can't work with particular VFDs are skipped during a 'make check-vfd' test. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15864] Description:Scot Breitenfeld2008-10-141-11/+46
| | | | | | | | We check for all the available reals in Fortran and if 16 byte real is available in Fortran and not in C then we disable the 16 byte real in Fortran. Also added the test for 12 byte real in Fortran so that it can match the 12 byte float in C if available. Note: if KIND=10 and KIND=16 are both avaiable as when using g95, then it may be the case on some systems that the size of KIND=10 and KIND=16 are both 16 bytes, so the program will print twice in H5fort_type_defines.h #define H5_FORTRAN_HAS_REAL_16 which should not cause any errors.
* [svn-r15861] Description:Quincey Koziol2008-10-1422-390/+493
| | | | | | | | | | | | | | | | | | | | | | | | Various bug fixes & cleanups with VFDs and file free space changes, along with cleaning up compiler warnings. Enable more VFDs (for 'make check-vfd' testing) for many tests. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15855] Purpose: Bring recent Windows-specific fixes from 1.8 branch to ↵Scott Wegner2008-10-133-7/+9
| | | | | | | | | | | | | | | | | | | | | | | | | | | | trunk Description: This checkin includes revisions 15845, 15846, and 15853 from the 1.8 branch. From the svn log: r15845: Purpose: Add Windows-specific version of HDftruncate Description: Windows doesn't include a version of the system call ftruncate. There is a similar call, _chsize_s, which performs very similarly. Thus, we map HDftruncate to _chsize_s in our Windows header file, H5win32defs.h. r15846: Purpose: Declare loop variable at beginning of function Description: On Windows, we were getting compile errors because h5test.c includes a function with variable declarations in the middle of the call. The Microsoft C compiler demands that all variables be declared at the top of the function. This checkin simply moves the declaration to the top to satisfy Visual Studio. r15853: Purpose: Decrease size of points array in links test Description: In the external_set_elink_fapl2 links test, there is a large array of points which declared on the stack for testing. Previously, the array was 1000 x 1000, which was too large for Visual Studio to handle. As a result, we were getting stack overflows during the test. We've reduced the number to 400, as this seems to be below the limit. The exact number of points in the array isn't important to the test. Tested: VS2005 on WinXP
* [svn-r15852] Added a new test case. When a datatype is a SOHM type in one ↵Raymond Lu2008-10-131-2/+181
| | | | | | | | file, test that the second file using the same datatype actually save it in the file, too. Tested with h5committest.
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