| Commit message (Collapse) | Author | Age | Files | Lines |
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Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
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* Set NVHPC maximum optimization level to -O1 for now
Compiling HDF5 with NVHPC 23.5 - 23.9 results in test failures in
4 different test files that need to be resolved. Since those tests
pass with an optimization level of -O1 (and -O0) and it is currently
unclear whether the test failures are due to issues in HDF5 or issues
in the 'nvc' compiler, set the maximum optimization level for NVHPC
to -O1 until the test failures are resolved.
* Disable nvhpc Java testing in CMake and amend known issues
* Re-enable testing of Autotools nvhpc
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* Disable testing as tests are failing the same as in CMake
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Fixes #3780
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* Add Doxygen for all H5FD_<VFD> initializers
* Add Doxygen for all H5FD_<VFD>_VALUE values
* Mark H5FD_<vfd>_init() calls private in Doxygen
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* H5FD_CURR_SPLITTER_VFD_CONFIG_VERSION
* H5FD_SPLITTER_PATH_MAX
* H5FD_SPLITTER_MAGIC
* H5FD_splitter_vfd_config_t
* H5Pset_fapl_splitter()
* H5Pget_fapl_splitter()
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The parallel compression test code tests for the case where all MPI ranks have no selection in a dataset when writing to it. Add an early exit to the code to avoid attempting to use a NULL pointer due to there being no work to do.
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Avoids overly verbose output from all processes emitting progress, etc. info.
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* Cancel running GitHub workflows on push to same PR
* Remove github.sha from workflow concurrency groups
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When opening a file with the core VFD and a file image, if the file
already exists, the file check would leak the POSIX file handle.
Fixes GitHub issue #635
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* Fix for issue #3025: Save the MPI info in the file struct so H5Fget_access_plist() can retrieve it from there.
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Allow H5Pset_evict_on_close to be called regardless of whether a parallel build of HDF5 is being used
Fail during file opens if H5Pset_evict_on_close has been set to true on the given File Access Property List and the size of the MPI communicator being used is greater than 1
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Add functions/callbacks for explicit control over chunk index open/close
Add functions/callbacks to check if chunk index is open or not so
that it can be opened if necessary before temporarily disabling
collective metadata reads in the library
Add functions/callbacks for requesting loading of additional chunk
index metadata beyond the chunk index itself
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* add missing H5PGET_ACTUAL_SELECTION_IO_MODE_F dll
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* added h5pget_actual_selection_io_mode_f test
* added tests for h5pget_actual_selection_io_mode_f
* fixed int_f type conversion
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* Update Autotools to correctly configure oneAPI
Splits the Intel config files under the Autotools into 'classic'
Intel and oneAPI versions, fixing 'unsupported option' messages.
Also turns off `-check uninit` (new in 2023) in Fortran, which kills
the H5_buildiface program due to false positives.
* Enable Fortran in oneAPI CI workflow
* Turn on Fortran in CMake, update LD_LIBRARY_PATH
* Go back to disabling Fortran w/ Intel
For some reason there's a linking problem w/ Fortran
error while loading shared libraries: libifport.so.5: cannot open shared object file: No such file or directory
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Added text to the usage of h5clear to explain that this tool is not
for fixing corrupted files but simply for helping in the inspection
of the damage..
Fixed expected output for testing the modified usage.
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Adds a small cache of the first N bytes of a file opened with the
read-only S3 (ros3) VFD, where N is 4kiB or the size of the file,
whichever is smaller. This avoids a lot of small I/O operations
on file open.
Addresses GitHub issue #3381
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* update stat arg for apple
* use H5_HAVE_DARWIN for Apple ifdef
* fix typo
* removed duplicate H5_ih_info_t
* added fortran async test to cmake
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* Add native VOL checks to deprecated functions
* Remove unneeded native VOL checks
* Move native checks to top level calls
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Adds missing files to `make clean` for parallel, including Fortran.
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(#3742)
This is the follow-up of PR #3702.
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Some tests in tfile.c use h5_fileaccess to get a VFD-dependent file
name but use the scheme from testhdf5, reusing the FILE1 and FILE8
names. This leads to files like test1.h5.h5 which are unintended
and not cleaned up.
This changes the filename scheme for a few tests to work with h5test,
resulting in more informative names and allowing the files to
be cleaned up at the end of the test. The test files have also
been added to the `make clean` target for the Autotools.
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The flushrefresh_test directory was not being cleaned up w/
`make clean` under the Autotools
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Removes generated HDF5 and text output files when running `make clean`.
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Cleans up h5dump and h5diff *.onion files in the Autotools when
runing `make clean`.
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This was only added to CMake many years ago and tests the tools
library.
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