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* [svn-r16749] New feature (Bug ID: 1345):Albert Cheng2009-04-143-1/+44
| | | | | | | | Added a Make target of check-all-install to test the correctness of installing via the prefix= or $DESTDIR options. Platforms tested: h5committested and jam serial mode. Then test check-all-install by hand.
* [svn-r16745] Added fixed bug 1536, about the include for the _getcwd() function.Allen Byrne2009-04-141-0/+2
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* [svn-r16742] Added #include <direct.h> to windows section. As discussed in ↵Allen Byrne2009-04-141-0/+1
| | | | | | Bug 1536, this include is needed to supply the _getcwd() function. Tested: XP 32 VS2005
* [svn-r16738] Snapshot version 1.9 release 38Larry Knox2009-04-1110-24/+24
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* [svn-r16736] Added H5Groot.c to src/make.com. Took out space_overflow.c ↵Raymond Lu2009-04-103-12/+1
| | | | | | from test/check.com and test/make.com. Not tested yet.
* [svn-r16734] addedPedro Vicente Nunes2009-04-101-0/+3
| | | | | | - h5diff new flag, -c, --compare, list objects that are not comparable. PVN - 2009/4/2 - 1368 - h5diff new flag, -N, --nan, avoids NaNs detection. PVN - 2009/4/2
* [svn-r16730] Purpose: Fix bug 1539bNeil Fortner2009-04-103-4/+77
| | | | | | | | | | Description: The H5L interface was not marked as uninitialized when H5L_term_interface was called. This caused the interface to not initialize itself later on. This prevented external links from working after calling H5close, because they were never re-registered. Tested: jam, smirom, linew (h5committest)
* [svn-r16729] Added H5Groot file to proj files.Allen Byrne2009-04-104-0/+151
| | | | Tested: Xp64-2005, XP32-VNET
* [svn-r16727] clean linux warningsPedro Vicente Nunes2009-04-101-15/+15
| | | | tested: linux
* [svn-r16723] Modified dset and t_chunk_alloc tests to use dataset dimensions ↵Christian Chilan2009-04-093-32/+14
| | | | | | that are multiples of the number of processors. Tested on jam and abe.
* [svn-r16721] Purpose: Fix problems with "no strct format checks"Neil Fortner2009-04-092-21/+46
| | | | | | | | | | Description: Changed H5G_mkroot to be tolerant of files with symbol table information cached but no symbol table in the root group. Also changed H5G_mkroot to properly clean up in case of an error, and changed H5G_stab_is_valid to properly detect errors in H5O_msg_read. Tested: jam, linew, smirom (h5committest), jam (--disable-strict-format-checks)
* [svn-r16719] clean linux warningsPedro Vicente Nunes2009-04-098-5056/+5052
| | | | tested: linux
* [svn-r16717] added some print messagesPedro Vicente Nunes2009-04-091-28/+43
| | | | tested: linux
* [svn-r16713] Add bug number to note about previous commit.Neil Fortner2009-04-081-1/+1
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* [svn-r16711] Revert unintentional change to family_v16_00000.h5. Will look ↵Neil Fortner2009-04-081-0/+0
| | | | | | into how it keeps getting changed.
* [svn-r16710] Purpose: Fix bug 1423Neil Fortner2009-04-0819-328/+552
| | | | | | | | | | | | | | Description: Versions of the library between 1.3.0 and 1.6.3 have a bug which prevents them from opening any file that does not have the root group's symbol table information cached in the root group's entry in the superblock. Prior to 1.8 this was not an issue as this information was always cached. However, 1.8.0 stopped writing this information (which is not required by the file format specification), and these older versions can therefore not read files created or last written by versions 1.8.0 to 1.8.2. This fix modifies the library to once again add this information to the superblock (when using the old file format). Tested: jam, linew, smirom (h5committest)
* [svn-r16708] added The scale index return value in H5DSiterate_scales was ↵Pedro Vicente Nunes2009-04-081-9/+12
| | | | | | not always + incremented. (PVN - 2009/4/8 - 1538)
* [svn-r16706] #1538 (B2) Problems with Dim Scale APIs reported by MathworksPedro Vicente Nunes2009-04-082-30/+80
| | | | | | | ISSUE2: the scale index input/output parameter value passed to H5DSiterate_scales was not always incremented (it returns the scale index current iteration). SOLUTION FOR ISSUE2: modified the cycle in H5DSiterate_scales so that the scale index is always incremented TEST: added some test cases with calls to invalid indices and H5DSiterate_scales with return scale indices and visitor data tested: windows, linux
* [svn-r16704] Snapshot version 1.9 release 37Larry Knox2009-04-089-24/+24
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* [svn-r16702] Purpose: Improve performance of factory free lists.Neil Fortner2009-04-083-166/+459
| | | | | | | | | | | Description: Factory free lists were formerly implemented as block free lists. This was inefficient as factories can only be one size, and implementing them as blocks (which can be variable size) wastedd computation and space. They have been rewritten with a separate implementation, which is simlar to regular free lists except they can be dynamically created and destroyed. Tested: jam, linew, smirom (h5committest)
* [svn-r16698] Purpose: Fix bug 503Neil Fortner2009-04-0816-333/+685
| | | | | | | | | Description: Changed Skip list package to use a deterministic skip list. This allows the skip list package to avoid calling rand() and srand(), even on machines without rand_r(). There is no longer a p-value or maximum level for skip lists. Tested: jam, smirom, linew (h5committest)
* [svn-r16696] #1538 (B2) Problems with Dim Scale APIs reported by MathworksPedro Vicente Nunes2009-04-082-91/+330
| | | | | | | ISSUE: When some functions are called with an invalid dimension index (for example, greater than the rank of the dataset) the function does not immediately fail, rather asserts down the code. SOLUTION: added this check for H5DSdetach_scale, H5DSset_label, H5DSget_label (the other functions have this check) . H5DSiterate_scales also added a check for an invalid dimension scale index TEST: added some test cases with calls to invalid indices DOCS: Nothing added
* [svn-r16694] Purpose: Fix bug 1526Neil Fortner2009-04-074-4/+103
| | | | | | | | | | | Description: Previously, H5Lcopy and H5Lmove would (through H5L_move) improperly apply the "create intermediate groups" property to the source path traversal, and not the destination. Fixed it to apply the property to the destination and not the source. Also fixed H5Lcreate_ud to reject internal link classes without throwing an assertion. Tested: linew, jam, smirom (h5committtest)
* [svn-r16683] Minor change in comments.Christian Chilan2009-04-071-1/+1
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* [svn-r16678] Description:Scot Breitenfeld2009-04-0716-1502/+1502
| | | | | | | | | Fixed warnings from absoft's compiler for !DEC$ statements. Solution: There should not be a space after !DEC$ statements, removed the spaces. Platforms tested: Jam with gcc and f95
* [svn-r16676] #1521 (B2) H5DSdetach_scale memory leakPedro Vicente Nunes2009-04-071-3/+11
| | | | | | | | ISSUE: Purify (Windows Visual Studio 6) complains of a memory leak in H5DSdetach_scale call regarding a H5Aread call (stack is H5A_read, H5T_convert, H5T_conv_vlen, H5T_vlen_seq_mem_write, H5MM_malloc). SOLUTION: When a scale is detached from a dataset, the variable length structure length field is decreased in one entry. The associated pointer must be reallocated with the new length. DOCS AND TEST: Nothing added tested: windows with purify, linux
* [svn-r16671] fix compiler error on a missing "static" declarationPedro Vicente Nunes2009-04-061-1/+1
| | | | tested: linux
* [svn-r16669] Corrected the urls for h5dump xml dtd and schemaAllen Byrne2009-04-0362-64/+65
| | | | Tested: Fedora 10 gcc
* [svn-r16666] Added h5tools.h to h5difftst.vcproj.Allen Byrne2009-04-032-4/+11
| | | | | | Added new test to h5repack.bat. Tested on XP32-VS2005-IVF101
* [svn-r16663] cleaned compiler warnings in linuxPedro Vicente Nunes2009-04-035-212/+274
| | | | tested: linux
* [svn-r16661] Remove command to copy h5Tinit.c in copy batch file. H5Tinit.c ↵Allen Byrne2009-04-031-1/+0
| | | | | | is generated during build and no longer exists in the windows/src folder. Tested: XP64 VS2005
* [svn-r16659] Modified dset and t_chunk_alloc tests to use dataset dimensions ↵Christian Chilan2009-04-023-51/+85
| | | | | | that are multiples of the number of processors. Tested on jam and abe.
* [svn-r16657] add a mention to #1402Pedro Vicente Nunes2009-04-021-1/+1
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* [svn-r16656] #1402 (B1) h5repack does not preserve creation order indexing. Pedro Vicente Nunes2009-04-024-2124/+2540
| | | | | | | | ISSUE : h5repack does not handle group creation order flags. ACTION: call H5P(g)(s)et_link_creation_order functions when handling groups, add new groups with these flags to the test generation program, and verify results in the test program. TEST: in the test program, function that compares property lists, added code to verify groups tested: windows, linux, solaris
* [svn-r16655] Description:Quincey Koziol2009-04-021-1/+2
| | | | | | | Clean up formatting (and test https: checkins to new subversion server) Tested on: None needed, just whitespace changes
* [svn-r16654] Description:Quincey Koziol2009-04-021-1/+1
| | | | | | | Clean up compiler warning (and test checkins on new subversion server) Tested on: None, just eyeballed, too minor to require test
* [svn-r16653] Bug fix #1503 - H5Iget_type failed unexpected when an invalid ↵Raymond Lu2009-04-012-20/+61
| | | | | | | | | ID was passed in. I put some argument check in the internal function H5I_find_id and took out the assertion check. I also removed the argument check in H5Iis_valid because it's in H5I_find_id now. Tested on jam - simple change. Tested v1.8 already.
* [svn-r16650] Snapshot version 1.9 release 36Larry Knox2009-04-0110-25/+25
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* [svn-r16646] fix typoPedro Vicente Nunes2009-04-011-2/+2
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* [svn-r16643] add a mention to #1501Pedro Vicente Nunes2009-04-011-2/+6
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* [svn-r16636] Description:Quincey Koziol2009-03-317-36/+40
| | | | | | | | | Pass some user data down into the extensible array client context creation callback. Tested on: FreeBSD/32 6.3 (duty) Too minor to require h5committest
* [svn-r16633] Description:Quincey Koziol2009-03-319-71/+379
| | | | | | | | | | | | | | | | | | | | | | Use metadata cache flush dependencies (and 'notify' callback) to give extensible arrays SWMR (single-writer/multiple-reader) access capability. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16632] Description:Quincey Koziol2009-03-3126-43/+38
| | | | | | | | | | | | | | | | | | | | | | Remove unnecessary 'udata' parameter from H5AC_set() and 'notify' callback (introduced with checkin that added the 'notify' callback) Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16631] Description:Quincey Koziol2009-03-311-0/+1
| | | | | | Correct error for 'notify' callback revealed in laggard parallel test Tested on: Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r16630] Description:Quincey Koziol2009-03-3141-36/+145
| | | | | | | | | | | | | | | | | | | | | | | | | Add 'notify' callback to metadata cache clients, so that they can be aware when the cache has taken/will take certain actions. Notifications are urrently limited to when an entry has successfully entered the cache (via an insertion or a load from the file) and when an entry is about to be evicted from the cache. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16629] removed a h5dump test (array type) that has a different bogus ↵Pedro Vicente Nunes2009-03-306-27/+13
| | | | | | | | | output in frebsd (liberty) removed the call to the file generation in the test generation program removed the binary h5 and ddl from svn tested: linux
* [svn-r16627] Description:Quincey Koziol2009-03-301-1/+1
| | | | | | | | Fix another set of missing parameters to updated H5C_get_entry_status() call. Tested on: Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r16626] Description:Quincey Koziol2009-03-301-1/+1
| | | | | | | Fix missing parameters to updated H5C_get_entry_status() call. Tested on: Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r16625] Description:Quincey Koziol2009-03-306-39/+98
| | | | | | | | | | | | | | | | | | | | | | Add mechanism for querying if an entry in the metadata cache is the parent or child in a flush dependency relationship. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16623] Description:Quincey Koziol2009-03-2610-95/+109
| | | | | | | | | | | | | | | | | | | | | | Revise how code for array statistics works. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
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