| Commit message (Collapse) | Author | Age | Files | Lines |
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* Reorg and update options for doc and cmake config
* Correct subfiling depends
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The tools library no longer checks for whether MPI is initialized when attempting to use a parallel VFD, such as the MPI I/O VFD or Subfiling VFD. This requires that parallel VFDs check for this situation and initialize MPI on their own if need be, but also allows parallel VFDs to be used with non-parallel HDF5 tools, such as h5dump.
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* Update upload- artifact to match download version
* Correct form of action call
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* Fix building VOLs under library with CMake <3.24
* Handle CMake version through override variable
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* added subfiling example
* Added filtered writes with no selection example
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(https://github.com/ilammy/msvc-dev-cmd), [actions/download-artifact](https://github.com/actions/download-artifact) and [github/codeql-action](https://github.com/github/codeql-action).
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* Add 'warning density' computation to the warnhist script, along with several
cleanups to it. Add "--enable-show-all-warnings" configure (and CMake)
option to disable compiler diagnostic suppression (and therefore show all the
otherwise suppressed compiler diagnostics), disabled by default. Clean up
a buncn of misc. warnings.
Signed-off-by: Quincey Koziol <qkoziol@amazon.com>
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Vector I/O requests are now processed within a single
set of I/O call batches, rather than each I/O vector
entry (tuple constructed from the types, addrs, sizes
and bufs arrays) being processed individually. This allows I/O to be
more efficiently parallelized among the I/O concentrator processes
during large I/O requests.
* Fixed some calculations and add test cases for issues spotted from review
* Removed a variable that was compensating for previous miscalculations
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* updated traverse example
* added H5PAR success statement
* skipping H5_f90_h5ex_g_traverse
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* Fix missing build-mode value
* Use 110 version file only for the 1.10 library
* Fix H5_LIBVER_DIR variable
* Disable 1.6 API tests for now.
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* Added missing \since tags to H5D.
* Committing clang-format changes
* Fixed H5T version info.
* Committing clang-format changes
* Added missing version info to H5E.
* Committing clang-format changes
* Added version info to H5F public APIs.
* Committing clang-format changes
* Added missing H5Z public API version info.
* Added missing version info to H5G public APIs
* Added missing version info to H5I public API.
* Added missing version info to H5 public APIs
* Committing clang-format changes
* Added missing version info to H5P public APIs
* Added missing version info to H5R public APIs
* Fix comment error.
* Committing clang-format changes
---------
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* Choose a size for rdata dimension
* Fix platform naming conflicts
* Fix doxygen references to point within library repo
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* disable building doxygen for netcdf test
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Bumps the github-actions group with 4 updates: [actions/checkout](https://github.com/actions/checkout), [ossf/scorecard-action](https://github.com/ossf/scorecard-action), [github/codeql-action](https://github.com/github/codeql-action) and [actions/setup-python](https://github.com/actions/setup-python).
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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and changed the helpdesk link to help.hdfgroup.org (#3893)
* Updated some portal links to go directly to docs.hdfgroup.
* Fixed some portal and help desk links
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to update them monthly (#3892)
* feat: hashpin sensitive dependencies on GHAs
Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com>
* feat: enable dependabot for monthly updates on GHA
Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com>
---------
Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com>
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Fixes:
checking for config freebsd12.1... no
checking for config freebsd... found
compiler '/home/svcpetsc/petsc-hash-pkgs/39f577/bin/mpicc' is GNU gcc-9.2.0
compiler '/home/svcpetsc/petsc-hash-pkgs/39f577/bin/mpif90' is GNU gfortran-9.2.0
stdout: .: cannot open ./config/classic-fflags: No such file or directory
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Using new shortened URL, might look better.
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* Update examples with 1.6 api and static libs
* Only check for STATIC only builds
* Do not calculate version as library has already.
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* Merge examples repo into library
* Change grepTest to be more fault-tolerant
* Update examples macro file
* Exclude all Fortran examples from doxygen
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* Fix segfault on user compound conversion
* Check if lib conversion func is in use
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generation, and other Fortran wrapper development practices as mentioned in the HDF5 architectural document. I added a new figure and included the SVG file and the original xfig file it was generated from. (#3862)
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* Changes for ECP-344: Implement selection vector I/O with collective chunk filling.
Also fix a bug in H5FD__mpio_write_vector() to account for fixed size optimization
when computing max address.
* Fixes based on PR review comments:
For H5Dchunk.c: fix H5MM_xfree()
For H5FDmpio.c:
1) Revert the fix to H5FD__mpio_write_vector()
2) Apply the patch from Neil on the proper length of s_sizes reported by H5FD__mpio_vector_build_types()
* Put back the logic of dividing up the work among all the mpi ranks similar to the
original H5D__chunk_collective_fill() routine.
* Add a test to verify the fix for the illegal reference problem in H5FD__mpio_write_vector().
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* Switch doxygen refs to hdf5/develop
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* Fix issue with HDF5_VOL_ALLOW_EXTERNAL CMake variable
* Add initial API test workflow
* Initialize parallel testing with MPI_THREAD_MULTIPLE when testing API
* Add CMake variable to allow specifying a VOL connector's package name
* Remove call to MPI_Init in serial API tests
While previously necessary, it now interferes with VOL connectors that
may need to be initialized with MPI_THREAD_MULTIPLE
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HDF5 performs a couple of checks at build time to see if long double
values can be converted correctly (IBM's Power architecture uses a
special format for long doubles). These checks were performed using
TRY_RUN, which is a problem when cross-compiling.
These checks now use default values appropriate for most non-Power
systems when cross-compiling. The cache values can be pre-set if
necessary, which will preempt both the TRY_RUN and the default.
Affected values:
H5_LDOUBLE_TO_LONG_SPECIAL (default no)
H5_LONG_TO_LDOUBLE_SPECIAL (default no)
H5_LDOUBLE_TO_LLONG_ACCURATE (default yes)
H5_LLONG_TO_LDOUBLE_CORRECT (default yes)
H5_DISABLE_SOME_LDOUBLE_CONV (default no)
Fixes GitHub #3585
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* Add extra space in comments for consistency
* uncomment tfloatsattrs test
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* Make filter callbacks use top-level API functions
When using VOL connectors, H5I_iterate may not provide
valid object pointers to its callback. This change keeps
existing functionality in H5Zunregister() without using
potentially unsafe pointers.
* Filter callbacks use internal API
* Skip MPI work on non-native VOL
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