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* [svn-r22219] Description:Quincey Koziol2012-03-3143-331/+4260
| | | | | | | | Merge "file image" changes from feature branch back to trunk. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest upcoming)
* [svn-r22214] Feature: HDFFV-7981Albert Cheng2012-03-301-6/+54
| | | | | | Added test to verify h5repack --metadata option produces bigger size file. Tested: h5committest (koala, jam, ostrich).
* [svn-r22211] STDIO VFD fixes (HDFFV-7917). Mainly Windows correctness ↵Dana Robinson2012-03-301-328/+343
| | | | | | | | | | | issues (propagated from the SEC2 VFD and the old Windows VFD) and issues where large files are accessed. Tested on: 64-bit Mac OS-X 64-bit Windows 7 jam koala ostrich
* [svn-r22202] Add extra search termAllen Byrne2012-03-291-2/+2
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* [svn-r22199] Correct typoAllen Byrne2012-03-291-5/+5
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* [svn-r22198] Update MINGW configuration (MinGW is Windows except for some ↵Allen Byrne2012-03-292-19/+19
| | | | issues)
* [svn-r22195] Add PASS_REGULAR_EXPRESSION property to fortran tests to verify ↵Allen Byrne2012-03-291-0/+3
| | | | | | 0 errors. Some platforms do not return proper value in CMake ADD_TEST and results in a false positive. Tested: local linux
* [svn-r22190] Update MINGW configurationAllen Byrne2012-03-291-8/+8
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* [svn-r22185] Update MINGW configuration to match HDFMacros settings for ↵Allen Byrne2012-03-291-6/+6
| | | | shared library
* [svn-r22183] Correct typoAllen Byrne2012-03-291-2/+2
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* [svn-r22182] Update MINGW configurationAllen Byrne2012-03-291-21/+42
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* [svn-r22181] Description:Quincey Koziol2012-03-291-2/+2
| | | | | | | Correct typo in test file name. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug
* [svn-r22180] Description:Quincey Koziol2012-03-296-120/+110
| | | | | | | | | Add new "metadata block size" command line option ('-M <x>' or '--metadata_block_size=<x>') for h5repack. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug) (h5committest upcoming)
* [svn-r22178] Fixed a bad merge where truncate was called twice in the core VFD.Dana Robinson2012-03-281-12/+2
| | | | | Minor change: tested on jam, koala, ostrich and 64-bit Windows 7 with the core VFD set.
* [svn-r22176] Purpose:Jonathan Kim2012-03-2820-291/+313
| | | | | | | | | | | | Fix for HDFFV-7644 GMQS: h5diff - incorrect behaviors when comparing HDF5 files with different type of objects (dataset, group, type) as common objects Description: Fixed failure for comparing same named object with different object types in comparing groups. (common object comparison) Prior to the fix, h5diff resulted in error. After the fix, h5diff detects such case as non-comparable and display messages accordingly. Test cases were added and tagged with jira#. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22175] MinGW compile issues fixed.Allen Byrne2012-03-284-7/+24
| | | | | | Reviewed Tested: windows (big test using stdio ony fails - this will be filed for further investigation)
* [svn-r22173] Purpose: Fix HDFFV-7762Neil Fortner2012-03-284-3/+185
| | | | | | | | | | | | | | | | Description: When copying an object with attribute creation order tracked, the attribute creation order was not copied correctly to the destination file, causing an error if the creation order was also indexed (due to attempting to insert duplicate keys) or incorrect creation orders otherwise. Fixed to copy the creation order correctly. Also fixed the attribute character set not being copied, and fixed an issue where an attribute opened with H5Aopen (or similar, but not by_idx), from an object using the latest format but without creation order being tracked, would always report the creation order as 0 (and marked as valid). Tested: jam, koala, ostrich (h5committest), durandal
* [svn-r22171] Description:Quincey Koziol2012-03-2828-142/+4621
| | | | | | | | | Bring "merge committed datatypes during H5Ocopy" feature from branch to trunk. (Also has some minor bugfixes with it) Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest coming up)
* [svn-r22170] Removed extraneous svn executable properties from ↵Dana Robinson2012-03-2879-0/+0
| | | | non-executable files.
* [svn-r22169] Description:Quincey Koziol2012-03-281-144/+137
| | | | | | | | Clean up formatting and whitespace. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (too minor to require h5committest)
* [svn-r22166] Reduce warnings from unneeded windows incude file.Allen Byrne2012-03-282-1/+4
| | | | | | Reviewed HDF5-68 Tested: windows
* [svn-r22164] Fixed a bug in H5Ocopy(): When copying an opened object, call ↵Vailin Choi2012-03-2810-12/+408
| | | | | | | the object's flush class action to ensure that cached data is flushed so that H5Ocopy will get the correct data. (HDFFV-7853)
* [svn-r22163] Added tests for optional parameters in h5ocopy_f.Scot Breitenfeld2012-03-281-62/+143
| | | | | | | Cleaned up comments by removing "C" notation comments Tested: jam (gnu, intel) koala (intel)
* [svn-r22161] Added a message when the time-consuming test is skipped due to ↵Dana Robinson2012-03-271-0/+2
| | | | | | a lack of sparse file support. Minor change: tested on 64-bit Windows 7
* [svn-r22154] Fixed comments for h5pcreate_f; added missing property classes.Scot Breitenfeld2012-03-271-15/+20
| | | | | | Tested: N/A
* [svn-r22152] Added a "skipped" message to the istore sparse test function.Dana Robinson2012-03-261-9/+16
| | | | | Minor change: tested on jam (test not skipped) and Mac OS-X Lion (test skipped due to HFS not supporting sparse files).
* [svn-r22149] Purpose:Mike McGreevy2012-03-263-35/+37
| | | | | | | | | | | | | | | | | | | | | | | | | HDFFV-944: Fortran test problem with HDF5 182, intel 11.0, open-mpi-1.2.8 Description: Moved libtool post-processing 'ed' snippet that replaces wl="" with wl="-Wl," when intel compilers are used to the end of the configure script, after libtool is actually generated. (I imagine that at some point in time during a libtool version upgrade the libtool script ceased being generated immediately after the libtool initialization macro and is generated at the end of configure with all other files). Additionally, added a leading 'g' to the replacement invocation to change all instances of wl="" to wl="-Wl," instead of just the first that it comes across. (There's a separate one for each compiler used (C, Fortran, C++)). Tested: Reproduced the reported make failure and tested resolution on NCSA's Forge with OpenMPI built with Intel 12.0.4. Also, h5committested.
* [svn-r22147] Purpose:Mike McGreevy2012-03-261-0/+3
| | | | | | Update RELEASE.txt for HDFFV-398 Tested: None needed, doc only.
* [svn-r22146] Purpose: ↵Mike McGreevy2012-03-263-3/+3
| | | | | | | | | | | | | | | | | | HDFFV-398: h5cc doesn't work with automake Description: Fixed compiler wrapper scripts to correctly detect compilation when -MT preprocessor flag is provided, fixing a bug in which its *.o argument was added to link_objs but not compile_args. This previously broke usage of h5cc as the provided compiler in configure scripts (like with h5edit) as automake may supply the -MT option to the compiler via the makefiles. Tested: Tested using h5edit and h5committested.
* [svn-r22144] Added DLL h5ocopy_f entry for windows.Scot Breitenfeld2012-03-262-0/+2
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* [svn-r22143] Description: added info about h5ocopy_f and ↵Scot Breitenfeld2012-03-261-1/+10
| | | | | | h5ltget_attribute_string_f
* [svn-r22142] Description : New Fortran wrapper (h5ocopy_f) for the C API H5OcopyScot Breitenfeld2012-03-264-3/+186
| | | | | | HDFFV-7965 Tested: jam (gnu), koala (gnu)
* [svn-r22140] Snapshot version 1.9 release 112HDF Tester2012-03-2515-32/+32
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* [svn-r22138] Add check for valid number of children in H5B_decode(). See ↵Neil Fortner2012-03-251-0/+4
| | | | | | HDFFV-5897. Tested: jam, durandal (too minor for full h5committest)
* [svn-r22136] Purpose:Jonathan Kim2012-03-231-0/+3
| | | | | | | | | | | update for HDFFV-7837 - h5diff: incorrect behavior with exclude-path option when unique object exist only in one file Description: Add the new test output list to test shell script. This is based on the previous commit r22114. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE)
* [svn-r22135] I added an item for Issue 7785. No test is needed.Raymond Lu2012-03-231-0/+4
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* [svn-r22134] Issue 7785 - follow-up checkin. I forgot to initialize a ↵Raymond Lu2012-03-231-0/+1
| | | | | | structure in H5D_read as I did in H5D_write. Tested on jam - simple change.
* [svn-r22133] Description: fixed problem with closing a non-existing file id.Scot Breitenfeld2012-03-231-1/+1
| | | | Tested: koala (gnu 4.1)
* [svn-r22130] Test for HDFFV-7777 h5ltget_attribure_string_f addedScot Breitenfeld2012-03-232-19/+44
| | | | Added check that HLDS fortran function do remove NULL character.
* [svn-r22129] HDFFV-7777: Fix for removing NULL character from fortran string ↵Scot Breitenfeld2012-03-234-20/+33
| | | | | | in h5lt_get_attribute_string_f Fixed size +1 error in HD5f2cstring
* [svn-r22128] Purpose: Fixed bug 4279Binh-Minh Ribler2012-03-233-6/+117
| | | | | | | | | | Description: Closed various HDF5 objects in DataSet::getInMemDataSize and Attribute::getInMemDataSize to remove some memory leaks. Platforms tested: Linux/32 2.6 (jam) Linux/64 2.6 (amani) SunOS 5.10 (linew)
* [svn-r22126] Fixes for Component installationAllen Byrne2012-03-221-1/+3
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* [svn-r22122] Issue 7785 - Writing or reading many small chunks ran out of ↵Raymond Lu2012-03-222-1/+2
| | | | | | | | memory and caused seg fault. I added checks in two places to make sure the library returns error stack when it fails to allocate memory. I didn't add any test to the test suite since there is no good way to test it. But I tested and verified the error stack by hand. Tested on jam, koala, ostrich.
* [svn-r22117] Fix for HDFFV-7916 (Windows/POSIX correctness issues in the ↵Dana Robinson2012-03-211-107/+164
| | | | | | | | | | | | | core VFD) and HDFFV-7603 (core VFD has trouble with 2GB+ files on Windows). Propagates the SEC2 driver fixes from HDF5 1.8.8 to the core VFD (mainly concerning the backing store). These fixes also conveniently fixed 7603 as well. Tested on: 64-bit Windows 7 jam koala ostrich
* [svn-r22116] #Issue 7922 - follow-up checkin. I changed the order of two ↵Raymond Lu2012-03-211-78/+76
| | | | | | private functions and a macro according to Quincey's suggestion. Tested on jam - simple change.
* [svn-r22115] Add 2 new API routines to set/unset file atomicity for files ↵Mohamad Chaarawi2012-03-217-0/+524
| | | | | | | opened with the MPI-IO VFD Add test cases for these two routines Jira issue HDFFV-7961
* [svn-r22114] Purpose:Jonathan Kim2012-03-2111-8/+184
| | | | | | | | | | | | | | | Fix for HDFFV-7837 - h5diff: incorrect behavior with exclude-path option when unique object exist only in one file Description: If unique objects exists only in one file and try to exclude the unique objects with --exclude-path option, h5diff missed excluding some objects. Fixed to exclude objects correctly in such case. Test cases were added and tagged with jira#. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22112] Description:Quincey Koziol2012-03-213-20/+26
| | | | | | | | Minor code safety issue in test/fheap.c and whitespace in other files. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (Too minor to require h5committest)
* [svn-r22111] Removed incorrect 'executable' svn properties.Dana Robinson2012-03-211-0/+0
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* [svn-r22110] Removed incorrect 'executable' svn properties.Dana Robinson2012-03-215-0/+0
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