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* [svn-r26609] Neil fixed a bug that caused a failure when a source file was ↵Elena Pourmal2015-03-261-2/+0
| | | | | | | closed. Removed comments from the example. Tested on jam.
* [svn-r26570] Commented lineis that print extra "VIRTUAL" keyword and blank ↵Elena Pourmal2015-03-251-0/+4
| | | | lines for demo on 3/25/2015. Allen will need to review it.
* [svn-r26568] Simplified percival example.Elena Pourmal2015-03-241-12/+9
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* [svn-r26567] h5dump was nopt displaying source selection correctly due to a ↵Elena Pourmal2015-03-241-1/+1
| | | | type; fixed.
* [svn-r26566] Fix error in H5S__hyper_project_intersection algorithm.Neil Fortner2015-03-242-6/+171
| | | | | | | | Note there are still some code coverage assertions in the selection matching algorithm - if you hit these try taking them out. Note make check still fails in h5dump test (unrelated to this checkin). Tested: ummon
* [svn-r26565] Since fill values for VDS do not work at this point initialized ↵Elena Pourmal2015-03-241-0/+5
| | | | | | | | the read buffer to show that VDS data is read correctly, leaving unmapped data untouched. Tested on jam.
* [svn-r26564] Modified related files after adding example/h5_vds-percival.cElena Pourmal2015-03-245-4/+13
| | | | Tested on jam.
* [svn-r26563] Added new percival example to MANFEST.Elena Pourmal2015-03-241-0/+1
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* [svn-r26562] Added examples for percival use case.Elena Pourmal2015-03-241-0/+245
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* [svn-r26559] Fix error in H5S_extent_copy (needs testing) - would not patch ↵Neil Fortner2015-03-242-4/+14
| | | | | | | | | | | | number of elements selected with "all" slections nor reset sharing state. Fix error in H5S__hyper_project_intersection algorithm. Note there are still some code coverage assertions in the selection matching algorithm - if you hit these try taking them out. Note make check still fails in h5dump test (unrelated to this checkin). Tested: ummon
* [svn-r26557] Removed commented VDS read code. tested on jam.Elena Pourmal2015-03-241-2/+0
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* [svn-r26482] Opening source files now reuses the flags from the virtual file.Neil Fortner2015-03-193-9/+33
| | | | | | | | | Added tests for I/O on virtual dataset with source datasets in unopened files. Note there are still some code coverage assertions in the selection matching algorithm - if you hit these try taking them out. Note make check still fails in h5dump test (unrelated to this checkin). Tested: ummon
* [svn-r26476] Add support for I/O in all cases with fixed size datasets and ↵Neil Fortner2015-03-188-151/+279
| | | | | | | | | | | | | no point selections. Add source dataspace extent patching (should allow closing the source file). Note fill values and various other features are not yet supported. Note there are still some code coverage assertions in the selection matching algorithm - if you hit these try taking them out. Note make check still fails in h5dump test (unrelated to this checkin). Tested: ummon
* [svn-r26469] INCOMPLETE, UNWORKING CODENeil Fortner2015-03-179-86/+535
| | | | Commit progress through 3/17/15
* [svn-r26442] Removed blank line and fixed ALL outputAllen Byrne2015-03-121-12/+30
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* [svn-r26440] Added new structure, removed ";", used static hyperslab arrays.Allen Byrne2015-03-123-30/+48
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* [svn-r26431] Add new example (reorder to match closer to makefile)Allen Byrne2015-03-111-12/+13
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* [svn-r26421] This is Neils' change exposed when I ran bin/reconfigure for ↵Elena Pourmal2015-03-101-1/+1
| | | | examples.
* [svn-r26420] Added new example for simple I/O. Modified other examples ↵Elena Pourmal2015-03-109-31/+229
| | | | according to the suggestion in H5VDS-7 (see VDS-178)
* [svn-r26418] Fix initial indent for selection_allAllen Byrne2015-03-101-0/+3
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* [svn-r26411] Add support for I/O in very simple cases (virtual mapping and ↵Neil Fortner2015-03-0910-58/+626
| | | | | | | | | file space are both H5S_ALL). Note make check fails in h5dump test (unrelated to this checkin). Tested: ummon
* [svn-r26383] Add MAPPING to VDS outputAllen Byrne2015-03-062-1/+2
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* [svn-r26376] Added new examples for fixed-size Excalibur and for Eiger use ↵Elena Pourmal2015-03-058-25/+437
| | | | | | cases. Fixed several typos. Tested on jam.
* [svn-r26361] Added check for unlimited to count/block print selectionAllen Byrne2015-03-041-4/+12
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* [svn-r26360] Modified CMake files to accomodate new h5_vds-exc.c example.Elena Pourmal2015-03-042-0/+3
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* [svn-r26359] Added h5_vds-exc.c to misc. files and ran bin/reconfigure.Elena Pourmal2015-03-044-6/+11
| | | | Tested on jam.
* [svn-r26357] Added mapping example for the Excalibur detector use case.Elena Pourmal2015-03-041-0/+212
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* [svn-r26353] Add VDS selection defines for ALL and NONEAllen Byrne2015-03-042-2/+4
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* [svn-r26352] Update h5dump to latest BNF - reg vs irreg hyperslabs.Allen Byrne2015-03-044-13/+96
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* [svn-r26346] Add more test cases, refactor test code to reduce code ↵Neil Fortner2015-03-033-105/+617
| | | | | | | | | duplication. Minor fixes in src. Note make check still fails in h5ls test. Tested: ummon
* [svn-r26343] Improved output.Elena Pourmal2015-03-021-4/+4
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* [svn-r26342] Added usage of the new H5S*_regular_hyperslab functions.Elena Pourmal2015-03-021-0/+12
| | | | Tested on jam.
* [svn-r26318] Update virtual layout to latest changesAllen Byrne2015-02-263-299/+261
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* [svn-r26306] Merge r26296 through 26304 from trunk to vds branch.Neil Fortner2015-02-2552-99/+470
|\ | | | | | | | | | | | | It should no longer be necessary to use --enable-using-memchecker make check fails due to an issue with h5ls apparently unrelated to the merge Tested: ummon
| * [svn-r26303] remove files with .clog2 extension generated by MPE when doing ↵Mohamad Chaarawi2015-02-2542-92/+94
| | | | | | | | make clean.
| * [svn-r26302] Description:Quincey Koziol2015-02-259-121/+190
| | | | | | | | | | | | | | | | | | Revise dataspace encode/decode routines to make them work better with future virtual dataset feature. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial (h5committest forthcoming)
| * [svn-r26301] Description:Quincey Koziol2015-02-253-3/+99
| | | | | | | | | | | | | | | | Bring Neil's fix for error in H5S_extent_copy() back to the trunk. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial (h5committest forthcoming)
| * [svn-r26300] Description:Quincey Koziol2015-02-253-0/+272
| | | | | | | | | | | | | | | | | | Add H5Sis_regular_hyperslab() and H5Sget_regular_hyperslab() API routines, along with tests. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial (h5committest forthcoming)
* | [svn-r26297] Changed example and h5dump according to suggestions at today's ↵Elena Pourmal2015-02-255-27/+32
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | code review VDS-176. BNF has been updated too. Now h5dump displays VDS like this: HDF5 "vds.h5" { GROUP "/" { DATASET "VDS" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) } STORAGE_LAYOUT { VIRTUAL { HYPERSLAB { (0,0)-(0,5) }; a.h5; A; ALL; HYPERSLAB { (1,0)-(1,5) }; b.h5; B; ALL; HYPERSLAB { (2,0)-(2,5) }; c.h5; C; ALL; } } } FILTERS { ....... I just commented the code with "EIP" and didn't delete to simplify the review with Allen tomorrow. Tested on jam
* | [svn-r26296] Merge r26050 through 26295 from trunk to vds branch.Neil Fortner2015-02-24215-8766/+2733
|\ \ | |/ | | | | Tested: ummon
| * [svn-r26294] Fix for HDFFV-9132.Scot Breitenfeld2015-02-242-1/+32
| | | | | | | | tested: h5committest
| * [svn-r26280] Removed tab indenting for Fortran source, tab indenting is not ↵Scot Breitenfeld2015-02-232-12/+12
| | | | | | | | F2003 standard compliant.
| * [svn-r26279] re-commit 26260 that Dana moved out fixing the versioning of ↵Mohamad Chaarawi2015-02-2311-45/+363
| | | | | | | | functions to work with v16 default API.
| * [svn-r26277] remove filename extensionAllen Byrne2015-02-231-1/+1
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| * [svn-r26276] Merged r26075-80, 86 from features/autotools_rework branch.Dana Robinson2015-02-238-587/+83
| | | | | | | | | | | | | | | | | | | | | | | | Cleans up time functions in the autotools input files. Removed deprecated gettimeofday() time zone code and configure processing. Also removed some unused time function configure checks and defines. Fixes: HDFFV-9083 and HDFFV-9085 Tested on: 32-bit linux, serial and parallel (jam) OS X (kite) Solaris (emu)
| * [svn-r26275] Merge of r26042, 26083, 26084, 26085 from features/autotools_reworkDana Robinson2015-02-223-105/+94
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Updated configure.ac so that the direct VFD can now be built without specifying _GNU_SOURCE, etc. on the command line. - The direct VFD is now disabled by default. It was previously enabled, but the configuration script couldn't configure it properly, making it a moot point. Fixes: HDFFV-9057, HDFFV-7567, HDFFV-9088, HDFFV-7566 Tested on: h5committest jam w/ direct VFD (*very* slow!) NOTE: platypus cmake fails, but this is not a new error.
| * [svn-r26272] Merge of r26071 from features/autotools_reworkDana Robinson2015-02-225-75/+6
| | | | | | | | | | | | | | | | | | | | | | | | Removes the --with-default-vfd option from configure. This was basically useless and only allowed selecting the stdio VFD. Since this is a demo VFD and not really a production VFD, we decided to retire this option. Fixes: HDFFV-9081 Tested on: h5committest NOTE: platypus cmake fails, but this is not a new error.
| * [svn-r26271] Reverse merge of r26260 which was causing daily test failures.Dana Robinson2015-02-2212-364/+45
| | | | | | | | Tested on: jam w/ parallel and fortran
| * [svn-r26260] - add an attribute callback to call H5_term_library when ↵Mohamad Chaarawi2015-02-2012-45/+364
| | | | | | | | | | | | | | | | | | MPI_COMM_SELF is destroyed. - add tests for above. - this is a fix for HDFFV-883. tested h5committest
| * [svn-r26259] Remove fileAllen Byrne2015-02-201-321/+0
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