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* [svn-r16844] Description:Mike McGreevy2009-04-222-0/+6
| | | | | | | | | | | | Adding dependency to h5repack test script. h5repack.sh needs h5repacktst to run first. Tested: Problem only appeared on Glory, but tested the dependence manually on jam by trying to run only the script and checking that it first ran the h5repacktst test program.
* [svn-r16842] Bug fix:Albert Cheng2009-04-223-6/+6
| | | | | | | | | | | | | If the AR command has embedded shell separators such as the case of "AR = ar -X 64", $AR ends up as a blank. Solution: Put quotes around the command substitution string to protect against embedded separators. Applied the same to both AR and RANLIB assignments. Tested: At Up (AIX 5.3) only because that was where I discovered the error when AR is ar -X 64
* [svn-r16839] Added a new test case for h5repack_named_dtypes.h5. Raymond Lu2009-04-221-0/+3
| | | | Not test yet.
* [svn-r16835] Allow an error class to use other class's major or minor ↵Raymond Lu2009-04-223-15/+34
| | | | | | errors. Added a test for it, too. Tested on jam - simple change.
* [svn-r16829] Bug fix.Albert Cheng2009-04-211-1/+1
| | | | | | | | | | | | | | | | In Up (AIX system), the insert_libhdf5_settings() infinite looped because it never found EOF. Man getc in another system said: "If the integer value returned by getc() is stored into a variable of type char and then compared against the integer constant EOF, the com- parison may never succeed, because sign-extension of a variable of type char on widening to integer is implementation-defined." Solution: Changed inchar from type char to int fixed the problem. Morale of the story: RTFM or HTCW (heed the compiler warnings). Tested: Up (AIX 5.3).
* [svn-r16826] Description:Frank Baker2009-04-211-7/+11
| | | | | Updated and restructured "Copyright Notice & License Terms" document per new standard.
* [svn-r16817] Fix problem in H5Z.c with --disable-deprecated-symbolsNeil Fortner2009-04-211-0/+6
| | | | Tested: jam (--disable-deprecated-symbols)
* [svn-r16816] Description:Binh-Minh Ribler2009-04-211-1/+11
| | | | | | | | | | | | | | Added member function Attribute::getInMemDataSize(), which is a wrapper of several C calls, to simplify getting the attribute's data size in memory. Used this new function in Attribute::read to get the fixed-len string attribute data. Added tests to tattr.cpp. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r16815] Description:Binh-Minh Ribler2009-04-212-12/+70
| | | | | | | | | | | | | | Added member function Attribute::getInMemDataSize(), which is a wrapper of several C calls, to simplify getting the attribute's data size in memory. Used this new function in Attribute::read to get the fixed-len string attribute data. Added to tests in tattr.cpp. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r16814] New feature(Bug 230):Albert Cheng2009-04-215-27/+139
| | | | | | | | | | | | | | | | | | | | | | | | Embed the content of libhdf5.settings into the hdf5 executables so that an "orphaned" executables can display (via the Unix strings command, for example) the library settings used to build the executables. This is a prototype implementation. Much improvement is needed. configure.in: Added the --disable-embedded-libinfo option to disable this feature. configure: src/H5config.h.in: Generated by autotools like automake. src/H5detect.c: Implement insert_libhdf5_settings() to insert the contents of libhdf5.settings into the library as an extern string variable so that it is included in all HDF5 executable. Much improvement is needed. fortran/src/Makefile.in: Auto-generated by bin/reconfigure. (i.e., I did make any changes to cause its direct regeneration). Tested: Jam serial, using default and --disable-embedded-libinfo, configure options.
* [svn-r16810] added the words "Not comparable" in the not comparable messagesPedro Vicente Nunes2009-04-2012-23/+23
| | | | tested: linux
* [svn-r16807] Purpose: Fix bug 1533Neil Fortner2009-04-2021-52/+151
| | | | | | | | | | | Description: Previously, there was no versioning for H5Z_class_t. This prevented applications written for 1.6 using custom filters from being able to use the 1.8 library. There is now an H5Z_class1_t and H5Z_class2_t to enable compatibility. H5Zregister is *not* versioned, it determines which version of the struct has been passed in by the value of the first field (id or version, both are ints). Tested: jam, linew, smirom (h5committest), jam (--with-default-api-version=v16)
* [svn-r16806] Purpose: Add new h5repack tests to WindowsScott Wegner2009-04-201-2/+9
| | | | | | | | Description: Three new tests were added to the h5repack test script in rev.16802. This checkin brings those new tests to Windows as well. Tested: VS2005 on WinXP x64
* [svn-r16803] Purpose: Fix bug 1548Neil Fortner2009-04-204-56/+70
| | | | | | | | | Description: When writing data to a dataset, the data transform was performed after type conversion. This caused an error if the file type was non-native. This has been changed so data transforms are always performed on the memory type. Tested: jam, linew. smirom (h5committest)
* [svn-r16800] Purpose: Fix bug 1516Neil Fortner2009-04-206-21/+387
| | | | | | | | | | | Description: h5repack previously would not take named datatypes into consideration when copying datasets and attributes. This would cause extra anonymous datatypes in the target file at best, and cause errors halfway through the repacking at worst. h5repack should now always handle named datatypes correctly. Named datatypes are also now converted to the native type when -n is given. Tested: jam, linew, smirom (h5committest)
* [svn-r16799] corrected typos in fortran APIScot Breitenfeld2009-04-201-4/+4
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* [svn-r16797] Changed Scot Breitenfeld2009-04-202-3/+5
| | | | | | | | | | | | | | H5D_CHUNK_CACHE_NSLOTS_DEFAULT_F H5D_CHUNK_CACHE_NBYTES_DEFAULT_F H5D_CHUNK_CACHE_W0_DEFAULT_F to H5D_CHUNK_CACHE_NSLOTS_DFLT_F H5D_CHUNK_CACHE_NBYTES_DFLT_F H5D_CHUNK_CACHE_W0_DFLT_F to get under the 31 limit for variable names
* [svn-r16796] Changed Scot Breitenfeld2009-04-202-9/+12
| | | | | | | | | | | | | | H5D_CHUNK_CACHE_NSLOTS_DEFAULT_F H5D_CHUNK_CACHE_NBYTES_DEFAULT_F H5D_CHUNK_CACHE_W0_DEFAULT_F to H5D_CHUNK_CACHE_NSLOTS_DFLT_F H5D_CHUNK_CACHE_NBYTES_DFLT_F H5D_CHUNK_CACHE_W0_DFLT_F to get under the 31 limit for variable names
* [svn-r16792] Description:Mike McGreevy2009-04-2049-189/+361
| | | | | | | | | | | | - Updated bin/reconfigure to use latest version of automake (1.10.2). Re-generated Makefile.in's by running bin/reconfigure. - Added libtool version numbers to c++, fortran, hl, hl c++, and hl fortran libraries. Tested: jam, liberty, smirom
* [svn-r16789] Bug Fix (Bug 1398):Albert Cheng2009-04-201-5/+11
| | | | | | | | | | | | | | | | | | | | | | | | | For gcc v4.3 and v4.4, with production mode, if -O3 is used, H5Tinit.c would fail to compile. Actually bad H5Tinit.c is produced. If -O (same as -O1) is used, H5Tinit.c compiled okay but test/dt_arith would fail with: Testing hard normalized long double -> signed char conversions time: comm and terminated abnormally When -O0 (no optimizatio) is used, H5Tinit.c compilete okay and all tests passed. Solution: Changed the config/gnu-flags to use -O0 for gcc v4.3 and 4.4 for production flags for now so that build and tests would work. Still need to investigate if the error is due to Gcc optimization bug or our code errors. Tested: In liberty with gcc43 and gcc44. Also, tested in jam and smirom with older versions of gcc. There are no gcc 43 or 44 compilers installed in other THG machines that I know.
* [svn-r16787] Description:Binh-Minh Ribler2009-04-192-48/+156
| | | | | | | | | | | | | Fixed to pass parameters to H5Awrite/H5Aread correctly so that all Attribute::write and Attribute::read methods work correctly for both fixed-length and variable-length string attributes. Added more test cases. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r16785] added missing test and compare cases inside compounds for nanPedro Vicente Nunes2009-04-182-673/+1022
| | | | tested: linux
* [svn-r16781] Added information about new fortran wrappers added:Scot Breitenfeld2009-04-171-0/+8
| | | | | | | H5D_h5dget_access_plist_f H5I_h5iis_valid_f H5P_h5pset_chunk_cache_f H5P_h5pget_chunk_cache_f
* [svn-r16780] Description:Scot Breitenfeld2009-04-173-4/+300
| | | | | | | | | | | | | | | Added tests for the new APIs: H5D_H5DGET_ACCESS_PLIST_F H5I_H5IIS_VALID_F H5P_H5PSET_CHUNK_CACHE_F H5P_H5PGET_CHUNK_CACHE_F Platforms tested: smirom: pgf90, ifort linew liberty: gcc43, gfortran43, gcc44, gfortran44
* [svn-r16779] A minor correction of previous checkin. The original files ↵Raymond Lu2009-04-171-8/+6
| | | | | | | | created with v1.6 library could be deleted by cleanup routine. I corrected it in this checkin. Tested on jam - simple change.
* [svn-r16777] Description:Scot Breitenfeld2009-04-172-0/+185
| | | | | | | | | | | Added APIs: H5P_H5PSET_CHUNK_CACHE_F H5P_H5PGET_CHUNK_CACHE_F Platforms tested: smirom: pgf90 ifort
* [svn-r16776] Description:Scot Breitenfeld2009-04-171-0/+9
| | | | | | | | | Added APIs: H5D_mp_H5DGET_ACCESS_PLIST_F H5I_mp_H5IIS_VALID_F H5P_mp_H5PSET_CHUNK_CACHE_F H5P_mp_H5PGET_CHUNK_CACHE_F
* [svn-r16775] Desciption:Scot Breitenfeld2009-04-171-0/+4
| | | | | | | | | Added APIs: H5D_mp_H5DGET_ACCESS_PLIST_F H5I_mp_H5IIS_VALID_F H5P_mp_H5PSET_CHUNK_CACHE_F H5P_mp_H5PGET_CHUNK_CACHE_F
* [svn-r16774] Description:Scot Breitenfeld2009-04-172-0/+72
| | | | | | Added Fortran API H5Iis_valid_f Platforms tested: smirom - ifort pgf90
* [svn-r16773] Description:Scot Breitenfeld2009-04-172-2/+72
| | | | | | Added Fortran API h5dget_access_plist_f Platforms Tested: Smirom - pgf90 ifort
* [svn-r16772] Added explicit declarations for H5D_CHUNK_CACHE_* constants.Scot Breitenfeld2009-04-171-0/+4
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* [svn-r16770] Modified parallel tests so they can run with arbitrary number ↵Christian Chilan2009-04-172-4/+5
| | | | | | of processors. Tested on jam and abe.
* [svn-r16768] Added definitionsScot Breitenfeld2009-04-162-2/+9
| | | | | | | | H5D_CHUNK_CACHE_NSLOTS_DEFAULT_F H5D_CHUNK_CACHE_NBYTES_DEFAULT_F H5D_CHUNK_CACHE_W0_DEFAULT_F used in cache/chunk functions.
* [svn-r16766] Fix a comment in H5Pdapl.c, update RELEASE.txt with chages to ↵Neil Fortner2009-04-162-1/+5
| | | | | | | | factory free lists. Tested: kate
* [svn-r16760] Fixed a simple typo in the echo statement in theAlbert Cheng2009-04-152-2/+2
| | | | | | | check-all-install actions. Tested: In jam by hand.
* [svn-r16759] The test of family file compatibility with v1.6 used the ↵Raymond Lu2009-04-153-11/+56
| | | | | | | | | | | original family files under the library source directory. Since the test opens the files with write mode, it's safer to make copies of the original files. I added the copying step in test_family_compat in vfd.c. I changed the Makefile.am to clean up the copied files. I created a new family_v16_00000.h5 with v1.6 library. Tested on jam - supposed to be simple change.
* [svn-r16754] bug fix (ID 1345):Albert Cheng2009-04-152-6/+6
| | | | | | | | Use environment variable instead of command parameter to test the install via $DESTDIR test. Tested: Jam and smirom by hand. (no h5committest which does not test this change.)
* [svn-r16749] New feature (Bug ID: 1345):Albert Cheng2009-04-143-1/+44
| | | | | | | | Added a Make target of check-all-install to test the correctness of installing via the prefix= or $DESTDIR options. Platforms tested: h5committested and jam serial mode. Then test check-all-install by hand.
* [svn-r16745] Added fixed bug 1536, about the include for the _getcwd() function.Allen Byrne2009-04-141-0/+2
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* [svn-r16742] Added #include <direct.h> to windows section. As discussed in ↵Allen Byrne2009-04-141-0/+1
| | | | | | Bug 1536, this include is needed to supply the _getcwd() function. Tested: XP 32 VS2005
* [svn-r16738] Snapshot version 1.9 release 38Larry Knox2009-04-1110-24/+24
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* [svn-r16736] Added H5Groot.c to src/make.com. Took out space_overflow.c ↵Raymond Lu2009-04-103-12/+1
| | | | | | from test/check.com and test/make.com. Not tested yet.
* [svn-r16734] addedPedro Vicente Nunes2009-04-101-0/+3
| | | | | | - h5diff new flag, -c, --compare, list objects that are not comparable. PVN - 2009/4/2 - 1368 - h5diff new flag, -N, --nan, avoids NaNs detection. PVN - 2009/4/2
* [svn-r16730] Purpose: Fix bug 1539bNeil Fortner2009-04-103-4/+77
| | | | | | | | | | Description: The H5L interface was not marked as uninitialized when H5L_term_interface was called. This caused the interface to not initialize itself later on. This prevented external links from working after calling H5close, because they were never re-registered. Tested: jam, smirom, linew (h5committest)
* [svn-r16729] Added H5Groot file to proj files.Allen Byrne2009-04-104-0/+151
| | | | Tested: Xp64-2005, XP32-VNET
* [svn-r16727] clean linux warningsPedro Vicente Nunes2009-04-101-15/+15
| | | | tested: linux
* [svn-r16723] Modified dset and t_chunk_alloc tests to use dataset dimensions ↵Christian Chilan2009-04-093-32/+14
| | | | | | that are multiples of the number of processors. Tested on jam and abe.
* [svn-r16721] Purpose: Fix problems with "no strct format checks"Neil Fortner2009-04-092-21/+46
| | | | | | | | | | Description: Changed H5G_mkroot to be tolerant of files with symbol table information cached but no symbol table in the root group. Also changed H5G_mkroot to properly clean up in case of an error, and changed H5G_stab_is_valid to properly detect errors in H5O_msg_read. Tested: jam, linew, smirom (h5committest), jam (--disable-strict-format-checks)
* [svn-r16719] clean linux warningsPedro Vicente Nunes2009-04-098-5056/+5052
| | | | tested: linux
* [svn-r16717] added some print messagesPedro Vicente Nunes2009-04-091-28/+43
| | | | tested: linux
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