| Commit message (Collapse) | Author | Age | Files | Lines |
... | |
| |
|
| |
|
|
|
| |
close #144
|
|
|
|
|
| |
* Enable mac tests
* Add platform test workflows to examples
|
| |
|
| |
|
|
|
| |
* The space difference in the Fortran examples must be fixed to match the expected output for compression filter examples.
|
| |
|
|
|
| |
Add citation source based on http://web.archive.org/web/20230610185232/https://portal.hdfgroup.org/display/knowledge/How+do+I+properly+cite+HDF5%2C+HDFView%2C+and+HSDS+in+a+paper. Created with https://citation-file-format.github.io/cff-initializer-javascript/
|
|
|
|
|
| |
* append '-WF,' when passing C preprocessor directives to the xlf compiler
* strip path from compiler name
|
| |
|
|
|
| |
system tab difference.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
* Add binary test job
* Correct names of jobs
* Add build mode to binary names
* Limit packaging execution
* Make mac DragNDrop optional
* Format if checks
* fix checks for TS
* Allow examples to be packaged
* Correct if NOT format
* Correct configure and workflow call
* Separate out CMake/Autotools Parallel job
* Correct binary examples path
* Correct dir path for windows test
* Correct paths and add extlibs
* Windows binaries do not have a share folder
|
| |
|
|
|
|
|
|
|
| |
(#3954)
* The issue was that the "allargs" variable was not being used in the final command of the compiler wrapper. Any entries containing an escaped quote (\", \') or other non-matching argument (*) would not be passed to the compile line. I have fixed this problem by ensuring all arguments passed to the compiler wrapper are now included in the compile line.
* added testing for compiler wrappers
|
|
|
|
|
| |
* fixed XL and Gfortran errors
* fixed data type len array
|
| |
|
|
|
|
|
| |
* revert to using c-stub for _F08 MPI APIs
* use mpi compiler wrappers for cmake and nvhpc
|
|
|
|
|
|
|
|
|
|
|
| |
* Switch warnings as errors to default OFF
* Enable mac docs
* Add doxygen action uses step
* Use html div around snippet
* Allow preset name to be an argument to cmake-ctest.yml
|
| |
|
| |
|
|
|
|
|
|
|
|
| |
as well (#3958)
ATM configuration was embedded within the CI workflow but that makes impossible
to use codespell locally since the tool would not find those settings. I moved them
into .codespellrc but then also removed codespell.yml workflow from skips, added .git and
in general makde it look for .dotfiles too
|
| |
|
| |
|
|
|
| |
* update H5Ssel_iter_reset_f test
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Remove cached datatype conversion path table entries on file close
When performing datatype conversions during I/O, the library
checks to see whether it can re-use a cached datatype conversion
pathway by performing comparisons between the source and destination
datatypes of the current operation and the source and destination
datatypes associated with each cached datatype conversion pathway.
For variable-length and reference datatypes, a comparison is made
between the VOL object for the file associated with these datatypes,
which may change as a file is closed and reopened. In workflows
involving a loop that opens a file, performs I/O on an object with a
variable-length or reference datatype and then closes the file, this
can lead to constant memory usage growth as the library compares the
file VOL objects between the datatypes as different and adds a new
cached conversion pathway entry on each iteration during I/O. This is
now fixed by clearing out any cached conversion pathway entries for
variable-length or reference datatypes associated with a particular
file when that file is closed.
|
|
|
| |
Add the user test program for committed types in HDFFV-9174
|
|
|
|
|
|
|
|
|
|
|
|
| |
* - Added Fortran APIs:
H5FGET_INTENT_F, H5SSELECT_ITER_CREATE_F, H5SSEL_ITER_GET_SEQ_LIST_F,
H5SSELECT_ITER_CLOSE_F, H5S_mp_H5SSELECT_ITER_RESET_F
- Added Fortran Parameters:
H5S_SEL_ITER_GET_SEQ_LIST_SORTED_F, H5S_SEL_ITER_SHARE_WITH_DATASPACE_F
- Added tests for new APIs
- Removed H5F C wrapper stubs
- Documentation misc. cleanup.
|
|
|
|
|
| |
* Update H5Fget_obj_count/ids to reflect dtype behavior
* Clarify comments on H5Fget_obj_ids
|
|
|
| |
Co-authored-by: Glenn Song <gsong@hdfgroup.org>
|
|
|
|
|
|
| |
off_t is a 32-bit signed value on Windows, so we should use HDoff_t
(which is __int64 on Windows) internally instead.
Also defines HDftell on Windows to be _ftelli64().
|
| |
|
|
|
|
|
|
|
| |
not used here] (#3886)
* autogen.sh: check directly for libtoolize instead of libtool [as libtool is not used here]
* autogen.sh: simplify (g)libtoolize check - look for glibtoolize first - and then libtoolize
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
* Reorg and update options for doc and cmake config
* Correct subfiling depends
* Add linux S3 binaries to GH published files
* Correct path
* Try reducing parallel jobs in tests
* Change examples jobs for test from 8 to 4
|
|
|
|
| |
* Reorg and update options for doc and cmake config
* Correct subfiling depends
|
|
|
| |
The tools library no longer checks for whether MPI is initialized when attempting to use a parallel VFD, such as the MPI I/O VFD or Subfiling VFD. This requires that parallel VFDs check for this situation and initialize MPI on their own if need be, but also allows parallel VFDs to be used with non-parallel HDF5 tools, such as h5dump.
|
|
|
|
|
| |
* Update upload- artifact to match download version
* Correct form of action call
|
| |
|
| |
|
| |
|
|
|
|
|
| |
* Fix building VOLs under library with CMake <3.24
* Handle CMake version through override variable
|
| |
|
|
|
|
|
| |
* added subfiling example
* Added filtered writes with no selection example
|
|
|
|
| |
(https://github.com/ilammy/msvc-dev-cmd), [actions/download-artifact](https://github.com/actions/download-artifact) and [github/codeql-action](https://github.com/github/codeql-action).
|
| |
|
|
|
|
|
|
|
|
|
| |
* Add 'warning density' computation to the warnhist script, along with several
cleanups to it. Add "--enable-show-all-warnings" configure (and CMake)
option to disable compiler diagnostic suppression (and therefore show all the
otherwise suppressed compiler diagnostics), disabled by default. Clean up
a buncn of misc. warnings.
Signed-off-by: Quincey Koziol <qkoziol@amazon.com>
|
|
|
|
|
|
|
|
|
|
|
|
| |
Vector I/O requests are now processed within a single
set of I/O call batches, rather than each I/O vector
entry (tuple constructed from the types, addrs, sizes
and bufs arrays) being processed individually. This allows I/O to be
more efficiently parallelized among the I/O concentrator processes
during large I/O requests.
* Fixed some calculations and add test cases for issues spotted from review
* Removed a variable that was compensating for previous miscalculations
|
|
|
|
|
|
|
| |
* updated traverse example
* added H5PAR success statement
* skipping H5_f90_h5ex_g_traverse
|
|
|
|
|
|
|
|
|
| |
* Fix missing build-mode value
* Use 110 version file only for the 1.10 library
* Fix H5_LIBVER_DIR variable
* Disable 1.6 API tests for now.
|