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* [svn-r25321] Reworked and enhanced extreme sanity check in H5C.c, fixing an John Mainzer2014-06-189-90/+1938
| | | | | | | | | | | | | | | | | | | | | | | | | uninitialized variable bug in passing. Added the H5C_get_entry_ptr_from_addr() and H5C_verify_entry_type() in H5C.c, along with their pass through functions in H5AC.c. Note that H5C_get_entry_ptr_from_addr() is quite slimey, and should be avoided if possible. Updated fractal heap to use flush ordering to force children in the hdr / iblock / dblock tree to be flushed prior to parents. This is part of a port of the fractal heap to the V3 cache, although I gather that it will also be useful for SWMR. Added sanity checking code to the fractal heap to verify that direct blocks are flushed before their parent indirect blocks, child indirect block are flushed prior to their parent indirect blocks, and that the root iblock or dblock is flushed prior to the header Tested on: Jam: Serial and parallel Phoenix (Debian): serial, debug and production amazon (MacOS): serial
* [svn-r25317] Edited the Introduction section.Mark Evans2014-06-181-18/+21
| | | | Tested: Doxygen and Firefox
* [svn-r25313] Use cmake var to store name of created h5_test_kind_xxxx mod file.Allen Byrne2014-06-181-3/+7
| | | | Tested: local linux
* [svn-r25310] Add max time for VFD objcopy testAllen Byrne2014-06-181-0/+1
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* [svn-r25304] Fixes latest check-in errors for:Scot Breitenfeld2014-06-173-44/+42
| | | | | | | | | | | | | | HDFFV-8653 replace non-standard sizeof in the fortran tests with c_sizeof (1) Removed the overloaded h5_sizeof functions for characters and integer arrays since Sun compilers don't allow them to be passed into a function that uses sizeof. (2) Requested min. precision for reals to avoid duplicate interfaces when the flag -r8 (or equiv.) is set. tested: *jam: intel, -i8 -r8 --enable-fortran2003 *jam: pgi, --enable-fortran2003 *emu: sun, --enable-fortran2003
* [svn-r25302] Add nounistd option to flex command for windows caompatibilityAllen Byrne2014-06-176-15/+7
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* [svn-r25300] Add flex / bison commands to bin script and regenerate hl files ↵Allen Byrne2014-06-166-1641/+3231
| | | | | | | using latest versions. No other files touched. Tested: h5committest
* [svn-r25299] correct case of CMake commandsAllen Byrne2014-06-161-1/+1
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* [svn-r25294] added implicit noneScot Breitenfeld2014-06-161-0/+1
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* [svn-r25291] Fix for:Scot Breitenfeld2014-06-161-1/+6
| | | | | HDFFV-8653 replace non-standard sizeof in the fortran tests with c_sizeof
* [svn-r25290] Fix for:Scot Breitenfeld2014-06-164-9/+57
| | | | | HDFFV-8653 replace non-standard sizeof in the fortran tests with c_sizeof
* [svn-r25287] Fix for:Scot Breitenfeld2014-06-162-0/+126
| | | | | HDFFV-8653 replace non-standard sizeof in the fortran tests with c_sizeof
* [svn-r25286] Fix for:Scot Breitenfeld2014-06-1615-71/+613
| | | | | | | HDFFV-8653 replace non-standard sizeof in the fortran tests with c_sizeof Tested: jam (gnu, intel) with make and cmake.
* [svn-r25285] Snapshot version 1.9 release 184HDF Tester2014-06-1517-880/+880
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* [svn-r25283] Description:Quincey Koziol2014-06-146-42/+42
| | | | | | | | | | Correct error in new hyperslab selection test to use the right # of dimensions for start/stride/count/block arrays. Also, switch H5Sselect_select to H5Smodify_select. Tested on: MacOSX/64 10.9.3 (amazon) w/gcc 4.9.1, OpenMPI, C++, FORTRAN & threadsafe (Too minor to require h5committest)
* [svn-r25282] remove obsolete fileAllen Byrne2014-06-131-5/+0
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* [svn-r25274] Adds #defines that ensures that DllMain is only compiled in ↵Dana Robinson2014-06-131-2/+6
| | | | | | | | when the thread-safe shared library is built on Windows. Fixes HDFFV-8837. Tested on 64-bit Windows 7 with VS2012.
* [svn-r25273] Description:Quincey Koziol2014-06-1334-3035/+5135
| | | | | | | | | | | Bring in Chao/Neil/my changes to optimize hyperslab selection operations further, along with 3 new public API routines: H5Scombine_hyperslab(), H5Sselect_select() and H5Scombine_select(), along with many minor cleanups to the code and fixing a few compiler warnings. Tested on: Mac OSX/64 10.9.3 w/gcc 4.9.x and parallel w/OpenMPI (h5commttest forthcoming)
* [svn-r25266] update to m4 1.4.17 in reconfigure did not change any other filesAllen Byrne2014-06-121-2/+2
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* [svn-r25261] limit vfd flush1 test timeAllen Byrne2014-06-111-0/+1
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* [svn-r25260] Update versionsAllen Byrne2014-06-111-28/+53
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* [svn-r25249] change test to ignore h5diff warnings (endianess issue)Allen Byrne2014-06-101-1/+1
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* [svn-r25241] Snapshot version 1.9 release 183HDF Tester2014-06-0813-26/+26
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* [svn-r25239] Add set_property command for list option.Allen Byrne2014-06-047-8/+12
| | | | Minor doc edits
* [svn-r25238] Removed warning about the data type of the actual argument does ↵Scot Breitenfeld2014-06-041-1/+1
| | | | | | not match the definition to verify function. Trivial fix. tested: jam (gnu)
* [svn-r25216] Snapshot version 1.9 release 182HDF Tester2014-05-2514-29/+29
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* [svn-r25215] Description:Quincey Koziol2014-05-258-132/+178
| | | | | | | | | | | | | | Bring changes from Coverity branch back to trunk: r20914: Use HDstrncpy and HDstrncat! --gh 20915: Use HDstrncpy and HDstrncat! --gh Tested on: Mac OSX/64 10.9.3 (amazon) w/gcc 4.9.0, C++, FORTRAN & parallel (too minor to require h5committest)
* [svn-r25208] Make the header generation optional and depend on finding perl ↵Allen Byrne2014-05-211-31/+37
| | | | executable. Needed because window does not have perl.
* [svn-r25207] Description:Quincey Koziol2014-05-201-1631/+1367
| | | | | | | | | | | | | Merge changes from Coverity branch to trunk: r20907: Original issue was #338. Refactored code to clean up allocations consistantly, completely, check all returns, assign initialization values and handle errors. Tested on: MacOSX/64 10.9.3 (amazon) w/gcc 4.9, FORTRAN, C++, parallel & multi-threaded (too minor to require h5committest)
* [svn-r25206] Description:Quincey Koziol2014-05-201-3/+79
| | | | | | | Add new warning flags for gcc 4.9.x Tested on: MacOSX/64 10.9.3 (amazon) w/gcc 4.9.0
* [svn-r25205] Fix CMP0040 Policy cmake usageAllen Byrne2014-05-201-7/+18
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* [svn-r25202] Description:Binh-Minh Ribler2014-05-191-2/+2
| | | | | | | Set OUTPUT_DIRECTORY to cpplus_RM and HTML_OUTPUT to '.' because they were reset by accident causing "bin/release doc" to fail. Ran bin/release to verify the failure was gone.
* [svn-r25199] Snapshot version 1.9 release 181HDF Tester2014-05-1813-26/+26
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* [svn-r25197] Description:Quincey Koziol2014-05-176-23/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | Bring changes from hdf5_1_8_coverity branch back to trunk: r20878: Issue 76: Check if H5Tget_nmembers(type) fails and simply return(FALSE). Also move printf to after check. r20880: Issue 192: Create ret_val var set to -1. Add out label for failures to jump to, return ret_val at bottom. r20882: Fixes for coverity: 1) bug #1679: remove dead code in test/mf.c 2) bug #1680: remove dead code in tools/lib/h5diff_dset.c r20883: Fix coverity issue 585 Description: Changed variable "c" in processStrData in h5import.c to an int, to match fgetc return value, and removed call to feof, instead checking if c == EOF. Tested on: MacOSX/64 10.9.3 (amazon) w/C++, FORTRAN & parallel (too minor to require h5committest)
* [svn-r25191] Moved file back to cmake folderAllen Byrne2014-05-141-1/+1
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* [svn-r25189] Fix CMP0053 cmake usageAllen Byrne2014-05-141-4/+4
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* [svn-r25188] Implement change to cmake_ext_mod config folderAllen Byrne2014-05-1448-4484/+155
| | | | Tested: local linux
* [svn-r25185] update cmake command name caseAllen Byrne2014-05-124-21/+6
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* [svn-r25183] correct path statementAllen Byrne2014-05-121-1/+1
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* [svn-r25181] Snapshot version 1.9 release 180HDF Tester2014-05-1114-27/+26
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* [svn-r25173] Removed unused module TH5F.Scot Breitenfeld2014-05-071-1/+0
| | | | Tested: jam (intel, pgi)
* [svn-r25169] Removed duplicate tests in fortranlib_test_1_8.f90 and ↵Scot Breitenfeld2014-05-064-17/+15
| | | | | | fortranlib_test.f90. Thus removing the dependency on tH5F.f90, which was causing compilation race-conditions in cmake. Tested: jam (gnu)
* [svn-r25163] Update file to match release changesAllen Byrne2014-05-051-472/+287
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* [svn-r25161] Removed some C++-style comments from H5FDcore.c.Dana Robinson2014-05-051-8/+0
| | | | | | | Tested on: 32-bit LE linux (jam) Tested with HDF5_DRIVER set to "core_paged".
* [svn-r25158] Snapshot version 1.9 release 179HDF Tester2014-05-0413-26/+26
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* [svn-r25136] Bug: HDFFV-8433Albert Cheng2014-04-301-23/+26
| | | | | | | The temporary directory used by zip is the same as the rest but it has to be different. Changed tar2zip to use a different (ztmpdir) name. Tested: by hand running "bin/release ... gzip zip md5".
* [svn-r25135] Remove property will fail - This only is true on windows shared.Allen Byrne2014-04-291-1/+2
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* [svn-r25133] Rudimentary changes; changed the casting of hid_t_f variables ↵Scot Breitenfeld2014-04-282-15/+15
| | | | | | that used a casting of int_f to use a casting of hid_t_f. Tested: jam (gnu)
* [svn-r25130] Add clarification to download location and extlibs.Allen Byrne2014-04-281-7/+22
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* [svn-r25128] HDFFV-8172: Add tests properties that indicate it will fail and ↵Allen Byrne2014-04-281-1/+3
| | | | to depend on PASSED in the output.
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