| Commit message (Collapse) | Author | Age | Files | Lines |
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* Add doxygen generation to daily-build and main
* Add doxygen option to matrix
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* Print out the VOL connector being used in the ASYNC test
* Add h5pget_vol_cap_flags_f with test
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* CMake: (fix) Szip / libaec filter
- Fixed the cmake configuration for the filter Szip / libaec.
Now, the decoding of this filter is properly configured and
included in the HDF5 library.
* CMake: (fix) Zlib filter
- Improved the cmake configuration for the filter zlib.
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Several macros for handling haddr_t values exist in H5Fprivate.h
and have H5F prefixes, even though they have nothing to do with
a particular file (e.g., H5F_addr_lt()).
These macros have been moved to H5private.h and renamed to have
an H5 prefix.
Affected macros:
H5F_addr_overflow
H5F_addr_defined
H5F_addr_eq
H5F_addr_ne
H5F_addr_lt
H5F_addr_le
H5F_addr_gt
H5F_addr_ge
H5F_addr_cmp
H5F_addr_overlap
H5F_addr_pow2 was unused and removed instead of converted.
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If a user buffer is misaligned in the type conversion code, memcpy
could fail if the call is SSE-optimized by the compiler. This change
adds uint8_t * casts so the compiler won't make optimistic assumptions
about buffer alignment.
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The H5F__efc_open() API call only needs the efc pointer, so there is
no need to pass the entire file struct in.
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* Remove macros from api tests (#2929)
* Remove macros and undefined callbacks (#2959)
* Remove remaining macros from H5_api_tests_disabled.h (#2968)
* Put some vol capability checks in testpar tests and remove remaining warnings (#2995)
* API tests datatype generation cleanup
* Clean up API tests' random datatype generation and fix bug with enum
datatype generation
* Init parallel API tests with MPI_THREAD_MULTIPLE
* HDF5 API tests - Check VOL connector registration
* Determine whether a VOL connector failed to load before running API
tests
* Cleanup some usages of H5VL_CAP_FLAG_CREATION_ORDER in API tests
* Remove some now-unused macros from H5_api_tests_disabled.h
* Enable HDF5 API tests by default
* Implement CMake option to install HDF5 API tests
* Check for invalid AAPL from H5Acreate
* Enable building of VOL connectors alongside HDF5 in CMake
* Prepend CMake VOL URL option indices with 0s so they come in order
* Don't turn on API tests by default yet
* Document VOL connector FetchContent functionality
* Add release note for API test updates
* Only install testing library if API tests are installed
* Fix grammar
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* Remove most unused options which are defaulted #2998
* Fix property list references
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Fixes Fortran doxygen warnings, #2998
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Use of an uninitialized H5L_info2_t struct caused some JNI tests to
raise asserts, causing a dialog box to be emitted, which would hang
automated tests.
Initializing the struct fixes the problem.
This change also re-enables tests in the Windows Debug GitHub actions.
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Implement (pre)release workflow for daily build
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There is no need for this since we use clang-format
Fixes #3004
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Also fixes broken thread-safety testing (due to a typo in the GitHub action checks)
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* Update macOS to 13
* Fix the DYLD_LIBRARY_PATH issue on macOS 12 & 13 + CMake that caused the accum test to fail
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Fixes failures when running tests after building with thread-safety
w/ code stacks on.
Fixes #2990
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* * Removed C wrappers for H5Ovisit_f and H5Ovist_by_name_f, modifying the Fortran source accordingly.
* The intent for op_data was declared INOUT, even though the pointer address INTENT is, in actuality, IN. gfortran was optimizing out op_data in tests where the values were repeatedly reset to the same value. The values were reset in the test because the data the pointer targeted was updated in the callback.
* Made use of the 'verify' function to check value correctness.
* changed to useing INTEGER(C_INT) instead of C_BOOL, updated the documentation
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* Fix plugin cache variable name
* Prefix plugin project local variables
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Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com>
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* Add autotools test for help
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* Changed to INTENT(IN) for C_PTR dummy args since it refers to whether C_PTR can be changed and does not relate to the INTENT state of the target.
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* Remove unnecessary 'magic' field from cache structs
Signed-off-by: Quincey Koziol <quincey@koziol.cc>
* Committing clang-format changes
---------
Signed-off-by: Quincey Koziol <quincey@koziol.cc>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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(#2957)
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Resolves #92
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* Prevent buffer overrun in H5S_select_deserialize
The call to H5S_select_deserialize from H5S_decode doesn't have
the buffer size available to it, so to allow decoding there
I set it to assume a max size buffer for now.
Making the buffer size known in H5S_decode could be done by
modifying the external API's H5Sdecode, or splitting H5Sdecode
into two functions using a macro (similar to H5Sencode), with the
macro taking one argument and assuming a max buffer size.
* Conditional buffer check in H5S_select_deserialize
Moved and renamed a macro for only checking buffer overflow when
buffer size is known from H5Odtype.c to H5private.h,
so it can be used throughout the library.
Also silenced some build warnings about types.
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* Move functions into more focused source code modules, along with a small #
of directly secondary effects. No actual changes to the contents of any
moved routines.
Signed-off-by: Quincey Koziol <quincey@koziol.cc>
* Committing clang-format changes
---------
Signed-off-by: Quincey Koziol <quincey@koziol.cc>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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Required for building with Intel's oneAPI
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* Add failure value where it's missing from 1+ macros. Clean up
whitespace / continuation characters ('\'). Made hash-table macros generic
for use in both the package header and test header. Remove duplicated
copy & pasted macros (by hoisting difference into #ifdef'd macro).
Updated and re-flowed comments to read better.
Also clean up a few compiler warnings in production builds.
Signed-off-by: Quincey Koziol <quincey@koziol.cc>
* Committing clang-format changes
* Remove unused variable warning in H5C.c (#2844)
* Remove trailing /* NDEBUG */ comment from #endif's
* Committing clang-format changes
---------
Signed-off-by: Quincey Koziol <quincey@koziol.cc>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* Reduce code duplication in macros
Signed-off-by: Quincey Koziol <quincey@koziol.cc>
* "insert" -> "remove" in error string
Signed-off-by: Quincey Koziol <koziol@lbl.gov>
* Remove unused macro also
Signed-off-by: Quincey Koziol <quincey@koziol.cc>
---------
Signed-off-by: Quincey Koziol <quincey@koziol.cc>
Signed-off-by: Quincey Koziol <quincey@koziol.cc>
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Removes unnecessary headers and adds missing headers, ensuring
that headers can be included independently and in any order.
Fixes #2789
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