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* Add compound subset ops on attributes to API tests (#4005)mattjala2024-02-142-0/+269
| | | | * Add partial compound io on attributes to API tests
* separate out individual checks for string removal (#4015)Allen Byrne2024-02-141-0/+4
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* Add C in project line for CMake to fix #4012. (#4014)H. Joe Lee2024-02-143-3/+3
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* Update install texts (#4010)Glenn Song2024-02-146-28/+22
| | | | | | | | * Update INSTALL_CMake.txt as necessary * Update remaining docs that use HDF5_USE_GNU_DIRS * Update options in HDFMacros in HDF5Examples
* Fix some output issues with ph5diff (#4008)jhendersonHDF2024-02-132-6/+8
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* Don't add files and directories with names that begin with ., or that match ↵Larry Knox2024-02-132-1/+2
| | | | | *autom4te* to release tar & zip files. (#4009) Filter messages with 'ulimit -s' out of test output for runTest.cmake.
* Add hl and cpp ABI reports to daily build (#4006)Allen Byrne2024-02-132-0/+33
| | | | * Add other non-fortran lib abi reports * removing hl_cpp abi reports because of lack of public symbols
* Issue #1824: Replaced most remaining sprintf with safer snprint (#4003)Sean McBride2024-02-1313-90/+93
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* Add a missing file into Makefile.am for MinGW Autotools build error. (#4004)H. Joe Lee2024-02-131-1/+1
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* remove incorrect check for environ (#4002)Allen Byrne2024-02-092-2/+0
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* Modern C++ dtor declarations (#1830)Sean McBride2024-02-0950-335/+38
| | | | | | | | * C++ dtor modernization - Replaced a bunch of empty dtors with `= default` - Removed deprecated `throw()`. In C++11, dtors are `noexcept` by default. *
* Fix build issue and some warnings in H5_api_dataset_test.c (#3998)jhendersonHDF2024-02-091-12/+5
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* Fix incompatible pointer type warnings in object reference examples (#3999)jhendersonHDF2024-02-092-2/+2
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* Fix overwritten preset names (#4000)Allen Byrne2024-02-092-14/+16
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* Updated information about obtaining the HDF5 source code to use the repos. ↵bmribler2024-02-081-10/+3
| | | | (#3972)
* Remove oneapi/clang compiler printf() type warning. (#3994)H. Joe Lee2024-02-082-2/+2
| | | * Remove oneapi/clang compiler printf() type warning from h5ex_t_opaque.c.
* Fix h5watch test failures to ignore system warnings on ppc64le. (#3997)Larry Knox2024-02-081-2/+3
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* Add abi-complience check and upload to releases (#3996)Allen Byrne2024-02-087-18/+185
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* Fix broken links caused by examples relocation. (#3995)H. Joe Lee2024-02-081-2/+2
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* Fix for github issue #2414: segfault when copying dataset with attrib… (#3967)vchoi-hdfgroup2024-02-061-2/+6
| | | | | | | | | | * Fix for github issue #2414: segfault when copying dataset with attributes. This also fixes github issue #3241: segfault when copying dataset. Need to set the location via H5T_set_loc() of the src datatype when copying dense attributes. Otherwise the vlen callbacks are not set up therefore causing seg fault when doing H5T_convert() -> H5T__conv_vlen().
* Sync API tests with vol-tests (#3940)mattjala2024-02-066-154/+1911
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* Update README with new release info (#3993)Dana Robinson2024-02-061-1/+2
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* Update release schedule (#3992)Dana Robinson2024-02-062-15/+12
| | | | * Add 2024, remove 2022 * Update README.md
* Bump the github-actions group with 6 updates (#3981)dependabot[bot]2024-02-067-27/+27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bumps the github-actions group with 6 updates: | Package | From | To | | --- | --- | --- | | [EndBug/add-and-commit](https://github.com/endbug/add-and-commit) | `9.1.3` | `9.1.4` | | [actions/setup-java](https://github.com/actions/setup-java) | `3` | `4` | | [ilammy/msvc-dev-cmd](https://github.com/ilammy/msvc-dev-cmd) | `1.12.1` | `1.13.0` | | [actions/download-artifact](https://github.com/actions/download-artifact) | `4.1.0` | `4.1.1` | | [actions/cache](https://github.com/actions/cache) | `3` | `4` | | [github/codeql-action](https://github.com/github/codeql-action) | `3.22.12` | `3.23.2` | Updates `EndBug/add-and-commit` from 9.1.3 to 9.1.4 - [Release notes](https://github.com/endbug/add-and-commit/releases) - [Commits](https://github.com/endbug/add-and-commit/compare/1bad3abcf0d6ec49a5857d124b0bfb52dc7bb081...a94899bca583c204427a224a7af87c02f9b325d5) Updates `actions/setup-java` from 3 to 4 - [Release notes](https://github.com/actions/setup-java/releases) - [Commits](https://github.com/actions/setup-java/compare/v3...v4) Updates `ilammy/msvc-dev-cmd` from 1.12.1 to 1.13.0 - [Release notes](https://github.com/ilammy/msvc-dev-cmd/releases) - [Commits](https://github.com/ilammy/msvc-dev-cmd/compare/v1.12.1...v1.13.0) Updates `actions/download-artifact` from 4.1.0 to 4.1.1 - [Release notes](https://github.com/actions/download-artifact/releases) - [Commits](https://github.com/actions/download-artifact/compare/f44cd7b40bfd40b6aa1cc1b9b5b7bf03d3c67110...6b208ae046db98c579e8a3aa621ab581ff575935) Updates `actions/cache` from 3 to 4 - [Release notes](https://github.com/actions/cache/releases) - [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md) - [Commits](https://github.com/actions/cache/compare/v3...v4) Updates `github/codeql-action` from 3.22.12 to 3.23.2 - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/github/codeql-action/compare/012739e5082ff0c22ca6d6ab32e07c36df03c4a4...b7bf0a3ed3ecfa44160715d7c442788f65f0f923) --- updated-dependencies: - dependency-name: EndBug/add-and-commit dependency-type: direct:production update-type: version-update:semver-patch dependency-group: github-actions - dependency-name: actions/setup-java dependency-type: direct:production update-type: version-update:semver-major dependency-group: github-actions - dependency-name: ilammy/msvc-dev-cmd dependency-type: direct:production update-type: version-update:semver-minor dependency-group: github-actions - dependency-name: actions/download-artifact dependency-type: direct:production update-type: version-update:semver-patch dependency-group: github-actions - dependency-name: actions/cache dependency-type: direct:production update-type: version-update:semver-major dependency-group: github-actions - dependency-name: github/codeql-action dependency-type: direct:production update-type: version-update:semver-minor dependency-group: github-actions ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Remove ADB signature from RELEASE.txt. (#3986)H. Joe Lee2024-02-061-1/+0
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* Add a missing left parenthesis in RELEASE.txt. (#3990)H. Joe Lee2024-02-061-1/+1
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* chore: fix typo (#3989)H. Joe Lee2024-02-061-1/+1
| | | close #144
* Make platform specific test presets for windows and macs (#3988)Allen Byrne2024-02-064-8/+104
| | | | | * Enable mac tests * Add platform test workflows to examples
* Skip mac bintest until more reliable (#3983)Allen Byrne2024-02-021-0/+1
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* corrected warning: implicit conversion changes signedness (#3982)Scot Breitenfeld2024-02-021-1/+1
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* Fixed spacing issues in example tests. (#3979)Scot Breitenfeld2024-02-0210-33/+43
| | | * The space difference in the Fortran examples must be fixed to match the expected output for compression filter examples.
* Add h5dump tests that require subfiling VFD (#3879)H. Joe Lee2024-02-018-1/+48
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* Create CITATION.cff (#3927)Stefano Probst2024-02-011-0/+12
| | | Add citation source based on http://web.archive.org/web/20230610185232/https://portal.hdfgroup.org/display/knowledge/How+do+I+properly+cite+HDF5%2C+HDFView%2C+and+HSDS+in+a+paper. Created with https://citation-file-format.github.io/cff-initializer-javascript/
* append '-WF,' when passing C preprocessor directives to the xlf compiler (#3976)Scot Breitenfeld2024-02-011-3/+8
| | | | | * append '-WF,' when passing C preprocessor directives to the xlf compiler * strip path from compiler name
* Clarify vlen string datatype message (#3950)mattjala2024-01-311-5/+19
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* Replace 'T2' with ' ' to avoid failure to match expected output due to (#3975)Larry Knox2024-01-315-25/+25
| | | system tab difference.
* Add binary testing to CI testing (#3971)Allen Byrne2024-01-3111-215/+542
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Add binary test job * Correct names of jobs * Add build mode to binary names * Limit packaging execution * Make mac DragNDrop optional * Format if checks * fix checks for TS * Allow examples to be packaged * Correct if NOT format * Correct configure and workflow call * Separate out CMake/Autotools Parallel job * Correct binary examples path * Correct dir path for windows test * Correct paths and add extlibs * Windows binaries do not have a share folder
* Explicitly use PROJECT_BINARY_DIR in target copy location (#3974)Allen Byrne2024-01-302-31/+31
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* h5 compiler wrappers now pass all arguments passed to it to the compile line ↵Scot Breitenfeld2024-01-306-38/+109
| | | | | | | (#3954) * The issue was that the "allargs" variable was not being used in the final command of the compiler wrapper. Any entries containing an escaped quote (\", \') or other non-matching argument (*) would not be passed to the compile line. I have fixed this problem by ensuring all arguments passed to the compiler wrapper are now included in the compile line. * added testing for compiler wrappers
* Fixed XL and gfortran errors (#3968)Scot Breitenfeld2024-01-303-9/+13
| | | | | * fixed XL and Gfortran errors * fixed data type len array
* Added a GitHub Codespaces configuration. (#3966)Gerd Heber2024-01-303-0/+34
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* Add API support for Fortran MPI_F08 module definitions. (#3959)Scot Breitenfeld2024-01-2914-24/+649
| | | | | * revert to using c-stub for _F08 MPI APIs * use mpi compiler wrappers for cmake and nvhpc
* Fix doxygen errors (#3962)Allen Byrne2024-01-2937-72/+209
| | | | | | | | | | | * Switch warnings as errors to default OFF * Enable mac docs * Add doxygen action uses step * Use html div around snippet * Allow preset name to be an argument to cmake-ctest.yml
* Document that fileno is same for all handles (#3963)mattjala2024-01-262-10/+19
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* Add RELEASE.txt note for the fix for issue #1256 (#3955)jhendersonHDF2024-01-261-0/+28
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* RF: move codespell configuration into .codespellrc so could be used locally ↵Yaroslav Halchenko2024-01-262-3/+6
| | | | | | | | as well (#3958) ATM configuration was embedded within the CI workflow but that makes impossible to use codespell locally since the tool would not find those settings. I moved them into .codespellrc but then also removed codespell.yml workflow from skips, added .git and in general makde it look for .dotfiles too
* Change 'extensible' to 'fixed' in H5FA code (#3964)Dana Robinson2024-01-262-2/+2
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* Fix potential infinite loop in API test (#3960)mattjala2024-01-251-1/+1
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* fixed BIND name (#3957)Scot Breitenfeld2024-01-242-8/+3
| | | * update H5Ssel_iter_reset_f test
* Remove cached datatype conversion path table entries on file close (#3942)jhendersonHDF2024-01-235-12/+307
| | | | | | | | | | | | | | | | | | | | Remove cached datatype conversion path table entries on file close When performing datatype conversions during I/O, the library checks to see whether it can re-use a cached datatype conversion pathway by performing comparisons between the source and destination datatypes of the current operation and the source and destination datatypes associated with each cached datatype conversion pathway. For variable-length and reference datatypes, a comparison is made between the VOL object for the file associated with these datatypes, which may change as a file is closed and reopened. In workflows involving a loop that opens a file, performs I/O on an object with a variable-length or reference datatype and then closes the file, this can lead to constant memory usage growth as the library compares the file VOL objects between the datatypes as different and adds a new cached conversion pathway entry on each iteration during I/O. This is now fixed by clearing out any cached conversion pathway entries for variable-length or reference datatypes associated with a particular file when that file is closed.
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