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* Add API routines to wrap and retrieve objectsQuincey Koziol2019-01-112-0/+72
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* Merge pull request #1462 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-01-096-164/+55
|\ | | | | | | | | | | * commit '9b0281736ca488387afd8a301e36e6f5a5315c4a': Fix deprecated H5Pget_version Fix regex
| * Fix deprecated H5Pget_versionAllen Byrne2019-01-095-127/+18
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| * Fix regexAllen Byrne2019-01-091-37/+37
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* Merge pull request #1461 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2019-01-092-2/+12
|\ | | | | | | | | | | * commit 'b3743a44238c284dc3817652271aa1475e3c4946': fixed 8 byte integer issue fix for xlf compiler
| * fixed 8 byte integer issueM. Scot Breitenfeld2019-01-091-1/+10
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| * Merge branch 'develop' of ↵M. Scot Breitenfeld2019-01-091-6/+6
| |\ | |/ |/| | | ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop
* | Merge pull request #1460 in HDFFV/hdf5 from ↵Dana Robinson2019-01-091-6/+6
|\ \ | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_minor_pr to develop * commit '287b5d03df03f9da5cf47f52e594f9909493d8ff': Fixed the MANIFEST
| * | Fixed the MANIFESTDana Robinson2019-01-091-6/+6
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| * fix for xlf compilerM. Scot Breitenfeld2019-01-091-1/+2
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* Merge pull request #1458 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2019-01-091-5/+5
|\ | | | | | | | | | | * commit '4f9ecd71e510a3835a49073fc16d3091a7fc25b2': replaced uint fix uint
| * replaced uintScot Breitenfeld2019-01-092-6/+6
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| * Merge branch 'develop' of ↵M. Scot Breitenfeld2019-01-080-0/+0
| |\ | | | | | | | | | ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop
| * | fix uintM. Scot Breitenfeld2019-01-081-1/+1
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* | | Merge pull request #1455 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developJordan Henderson2019-01-092-0/+59
|\ \ \ | | | | | | | | | | | | | | | | * commit '2d7eb9a4c3a841f7612b88f6b559792cb6143930': Align behavior of H5Aget_name_by_idx with H5Aget_name when a NULL buffer is supplied
| * | | Align behavior of H5Aget_name_by_idx with H5Aget_name when a NULL buffer is ↵Jordan Henderson2019-01-082-0/+59
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* | | | Merge pull request #1441 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-01-093-3/+19
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr_fixbug:develop to develop * commit '90d13bef33f9e2e80b23996a0c39f16f7c34ecf8': Fixed typo Platforms tested: Darwin (osx1010test) Refixed HDFFV-10578 Description: Applied Neil's fix for this issue after removing previous attempt. The resources are now released in init_objs() when failure occurs there. Neil will fix HDFFV-10676 separately. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test) Removed previous change in H5O__chunk_deserialize(). Removed the previous change in H5O__chunk_deserialize() Removed previous change in table_list_add(). Removed the previous change in table_list_add() Updated per review Description: HDFFV-10676 - CVE-2018-13873 Changed the new assert to if statement, per Dana's comment. Platforms tested: Linux/64 (jelly) HDFFV-10578 and HDFFV-10676 Description: HDFFV-10578 - CVE-2018-17234 The file has some issue, however, there was a bug in h5dump that caused memory leaks after the problem in the file was encountered. The bug was that an if statement was missing in the function table_list_add() resulting in the memory not being freed at a later time. After the fix had been applied, there were no more leaks after h5dump detected the issue in the file and reported the error.
| * | | | Fixed typoBinh-Minh Ribler2019-01-081-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | Platforms tested: Darwin (osx1010test)
| * | | | Refixed HDFFV-10578Binh-Minh Ribler2019-01-082-2/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Applied Neil's fix for this issue after removing previous attempt. The resources are now released in init_objs() when failure occurs there. Neil will fix HDFFV-10676 separately. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
| * | | | Removed previous change in H5O__chunk_deserialize().Binh-Minh Ribler2019-01-071-1/+0
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| * | | | Removed the previous change in H5O__chunk_deserialize()Binh-Minh Ribler2019-01-071-2/+0
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| * | | | Removed previous change in table_list_add().Binh-Minh Ribler2019-01-071-3/+3
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| * | | | Removed the previous change in table_list_add()Binh-Minh Ribler2019-01-071-2/+1
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| * | | | Updated per reviewBinh-Minh Ribler2019-01-071-1/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: HDFFV-10676 - CVE-2018-13873 Changed the new assert to if statement, per Dana's comment. Platforms tested: Linux/64 (jelly)
| * | | | Merge branch 'develop' of ↵Binh-Minh Ribler2019-01-06111-4977/+9119
| |\ \ \ \ | | | | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop
| * | | | | HDFFV-10578 and HDFFV-10676Binh-Minh Ribler2019-01-062-4/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: HDFFV-10578 - CVE-2018-17234 The file has some issue, however, there was a bug in h5dump that caused memory leaks after the problem in the file was encountered. The bug was that an if statement was missing in the function table_list_add() resulting in the memory not being freed at a later time. After the fix had been applied, there were no more leaks after h5dump detected the issue in the file and reported the error. In H5O__chunk_deserialize, replaced an assert with an if statement and reporting error, per Neil's recommendation HDFFV-10676 - CVE-2018-13873 Also in H5O__chunk_deserialize, added an assertion to detect out of bound ids
* | | | | | Merge pull request #1450 in HDFFV/hdf5 from ↵Ray Lu2019-01-085-9/+128
|\ \ \ \ \ \ | |_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:TRILAB-98-dt_arith-and-cpp_testhdf5-tests to develop * commit 'b02de315b93ac29d2483a91d526b110a25073505': NNSA Tri-LabsTRILAB-98: Another two test cases out. NNSA Tri-Labs TRILAB-98: Taking out a few more test cases. NNSA Tri-Labs TRILAB-98 dt_arith and cpp_testhdf5 tests fail on sierra.llnl.gov: According to the group decision, simply provide a macro to disable some failing test cases on sierra (IBM power9 cpu). All failing cases involve long double data type.
| * | | | | NNSA Tri-LabsTRILAB-98: Another two test cases out.Songyu Lu2019-01-081-1/+18
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| * | | | | NNSA Tri-Labs TRILAB-98: Taking out a few more test cases.Songyu Lu2019-01-082-13/+25
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| * | | | | NNSA Tri-Labs TRILAB-98 dt_arith and cpp_testhdf5 tests fail on ↵Songyu Lu2019-01-085-2/+92
| | | | | | | | | | | | | | | | | | | | | | | | sierra.llnl.gov: According to the group decision, simply provide a macro to disable some failing test cases on sierra (IBM power9 cpu). All failing cases involve long double data type.
* | | | | | Merge pull request #1456 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2019-01-081-1/+22
|\ \ \ \ \ \ | |_|_|_|/ / |/| | | | / | | |_|_|/ | |/| | | * commit 'fb5d83e146679f4d0ca16cf54b410f04a262451e': Updated Fortran Bug and new features
| * | | | Updated Fortran Bug and new featuresM. Scot Breitenfeld2019-01-081-1/+22
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* | | | Merge pull request #1454 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-01-082-37/+40
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'b88df58cc952563c35107daa1b8ced24b0cc03b5': Add missing define created in configure.ac Correct regex option
| * | | | Add missing define created in configure.acAllen Byrne2019-01-081-0/+3
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| * | | | Correct regex optionAllen Byrne2019-01-081-37/+37
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* | | | Merge pull request #1452 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developJordan Henderson2019-01-081-4/+8
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | * commit '805b64685371982e9c7fd693497865197990cbd6': Fix for parallel filters tests with new read-proc0-broadcast feature
| * | | | Fix for parallel filters tests with new read-proc0-broadcast featureJordan Henderson2019-01-081-4/+8
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* | | | | Merge pull request #1409 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:J10443 to developScot Breitenfeld2019-01-0812-70/+605
|\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'b4d4d371a03158c39f120b1bde6c4bd51f1b2eb6': HDFFV-10443: Add "field" parameter to H5Oinfo* and H5Ovisit* APIs. Added chunked dataset, H5S_ALL test typo typo updated defined constants Documented HDFFV-10652 HDFFV-10652 Implemented a process-0 read and then broadcast for collective read of full datasets (H5S_ALL) by all the processes in the file communicator. Removed reason for breaking read-proc0-and-bcast switched to using CX instead of a global var. HDFFV-10652 Implemented a process-0 read and then broadcast for collective read of full datasets (H5S_ALL) by all the processes in the file communicator.
| * | | | | HDFFV-10443: Add "field" parameter to H5Oinfo* and H5Ovisit* APIs.Scot Breitenfeld2019-01-0814-78/+600
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| * | | | | Merge remote-tracking branch 'upstream/develop' into developM. Scot Breitenfeld2019-01-0835-335/+627
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| * | | | | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵M. Scot Breitenfeld2019-01-07208-10362/+16177
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| * | | | | Added chunked dataset, H5S_ALL testM. Scot Breitenfeld2019-01-031-3/+111
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| * | | | | Merge branch 'develop' of ↵M. Scot Breitenfeld2019-01-021-1/+7
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop
| | * | | | | typoM. Scot Breitenfeld2019-01-021-1/+1
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| | * | | | | Merge branch 'develop' of ↵M. Scot Breitenfeld2019-01-021-1/+7
| | |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop
| | | * | | | | Documented HDFFV-10652M. Scot Breitenfeld2019-01-021-1/+7
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| * | | | | | | typoM. Scot Breitenfeld2019-01-021-1/+1
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| * | | | | | updated defined constantsM. Scot Breitenfeld2019-01-021-6/+10
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| * | | | | Merge branch 'develop' of ↵M. Scot Breitenfeld2019-01-022-0/+67
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop
| | * | | | | Removed reason for breaking read-proc0-and-bcastM. Scot Breitenfeld2019-01-023-9/+2
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