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* [svn-r21237] Description:Jonathan Kim2011-08-166-6/+69
| | | | | | | | Add test cases for HDFFV-7656 - "--delta=something" considers two NaN of the same type are different. The fix was added (r21105) before but test cases were incorrectly added and missing for cmake script. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), cmake
* [svn-r21236] Purpose:Jonathan Kim2011-08-1611-61/+300
| | | | | | | | | | | | | | | | | | | | Work for: HDFFV-7515 - GMQS: h5unjam - incorrect help page and should display when no file is given. and HDFFV-5941 - h5jam: specifying a user block file with a proper HDF5 magic number will result in a corrupted HDF5 file. Description: - Revised command help pages of h5jam and h5unjam. The descriptions were not up to date and some were missing. (HDFFV-7515) - Fixed h5jam not to allow specifying an HDF5 formatted file as input file for -u (user block file) option, because the original HDF5 file will not be accessible if allows. (HDFFV-5941) Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam, Wondows)
* [svn-r21228] Added #ifdefs around #include unistd.h and created windows ↵Allen Byrne2011-08-1510-426/+488
| | | | | | getlogin() function for building HDF5 parallel on windows. Reviewed and tested locally and tested by user.
* [svn-r21227] Correct location of xml schema files. JIRA HDFFV-7688Allen Byrne2011-08-151-22/+29
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* [svn-r21225] Snapshot version 1.9 release 88HDF Tester2011-08-1414-30/+30
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* [svn-r21220] The original code Raymond Lu2011-08-121-1/+12
| | | | | | | | | i_mask = ~((unsigned)~0 << (precision[0] + offset[0])) & ((unsigned)~0 << offset[0]); in line 3680 left shifted a 32-bit integer for 32-bit. The result is undefined by C language. A user discovered it using clang compiler with -fcatch-undefined-behavior option (see Issue 7674 in Jira). So I changed it in a funny way to avoid it. Tested on jam, koala, and heiwa.
* [svn-r21210] Correct location of xml schema files. JIRA HDFFV-7688Allen Byrne2011-08-1062-66/+66
| | | | Tested: local linux
* [svn-r21209] Added descriptive comment to H5G_stab_valid comment block. ↵Dana Robinson2011-08-101-0/+6
| | | | Tested locally just to ensure no errors were introduced.
* [svn-r21208] Add fortran COMPILE_FLAGSAllen Byrne2011-08-107-12/+145
| | | | | remove benchpar and mpi-perf tests add new prunTest.cmake that will be modified for parallel tests
* [svn-r21205] Issue 2763 - adding OAPL_ID as a new parameter to ↵Raymond Lu2011-08-101-0/+3
| | | | | | | | H5Rdereference. I added a check of OAPL_ID against -1 because CMAKE on 64-bit Windows slipped through the function call in the trefer.c test. Tested on jam and CMAKE on 64-bit Windows.
* [svn-r21202] Prepend test folder name to perform and testpar cmake testsAllen Byrne2011-08-091-1/+1
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* [svn-r21201] Prepend test folder name to perform and testpar cmake testsAllen Byrne2011-08-094-20/+24
| | | | | | | Replace runTest command param spaces with ; Change CTEST_NAME to HDF5 - the project name Tested: local linux, windows
* [svn-r21198] Change default fortran compiler to gfortranAllen Byrne2011-08-092-4/+7
| | | | Tested: cygwin
* [svn-r21195] Correct windows exports for h5diff.Allen Byrne2011-08-089-83/+136
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* [svn-r21194] Add parallel version of windows def file for fortran exportsAllen Byrne2011-08-083-2/+537
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* [svn-r21193] Correct mis-spelled functionsAllen Byrne2011-08-081-2/+2
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* [svn-r21192] Correct Windows Fortran static builds.Allen Byrne2011-08-081-4/+9
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* [svn-r21185] Snapshot version 1.9 release 87HDF Tester2011-08-0714-30/+30
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* [svn-r21175] Release datatypes created locallyAllen Byrne2011-08-051-0/+18
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* [svn-r21171] Commit HDFFV-5929 winthreads define fixAllen Byrne2011-08-047-41/+46
| | | | | | Change reference of generated executables in src and fortran/src to use $<TARGETFILE:xxx> format. Tested: local linux
* [svn-r21166] Remove subfolder in library installAllen Byrne2011-08-011-5/+5
| | | | Tested: local linux
* [svn-r21163] Remove test library from export listAllen Byrne2011-08-011-1/+0
| | | | Tested: local linux
* [svn-r21158] Snapshot version 1.9 release 86HDF Tester2011-07-3114-30/+30
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* [svn-r21157] Description: JIRA HDFFV-7673: fixed segfault when retrieving ↵Scot Breitenfeld2011-07-312-13/+25
| | | | | | | | | the length of a a dimension scale that does not exist. Implemented a test for the situation and added an if condition depending on if the label name exists. Tested: jam (gnu and intel)
* [svn-r21152] Description:Quincey Koziol2011-07-286-0/+205
| | | | | | | | | | | | | | | | | | | | Further patches for Jira 7638, to ensure that H5D/Aget_type will be attached to the correct top file. (This change to the library should reverted when Jira 7638 is finally finished) Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Mac OS X/32 10.6.8 (amazon) in debug mode Mac OS X/32 10.6.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r21149] Snapshot version 1.9 release 85HDF Tester2011-07-2417-57/+61
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* [svn-r21146] Updated RELEASE.txtLarry Knox2011-07-231-26/+42
| | | | | | | Replaced several old Linux platforms no longer in use with the current Linux test machine information. No test - doc file only. M release_docs/RELEASE.txt
* [svn-r21143] No access to any AIX system any more.Albert Cheng2011-07-231-8/+0
| | | | Removed entries of AIX as tested platform.
* [svn-r21137] Description:Quincey Koziol2011-07-211-2/+2
| | | | | | | | Tiny change to reduce code coupling w/H5F package. Tested on: FreeBSD/64 8.2 (freedom) w/debug (too minor to require h5committest)
* [svn-r21135] Description:Quincey Koziol2011-07-218-120/+438
| | | | | | | | | | | | | | | | More code cleanups to reduce coupling with the H5F package. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Mac OS X/32 10.6.8 (amazon) in debug mode
* [svn-r21133] Description:Quincey Koziol2011-07-2018-192/+633
| | | | | | | | | | | | | | | | | More code cleanups to reduce coupling between packages that use the H5F internal routines, but really aren't part of the H5F "package". Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Mac OS X/32 10.6.8 (amazon) in debug mode
* [svn-r21131] Description:Quincey Koziol2011-07-201-3/+16
| | | | | | | | | | | | | | | | | Disable some test code that isn't going to work correctly again until we've completely resolved Jira issue #7638. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Mac OS X/32 10.6.8 (amazon) in debug mode
* [svn-r21127] Description:Quincey Koziol2011-07-201-4/+4
| | | | | | | Correct to use correct FAPL, to fix error when running 'make check-vfd' Tested on: Linux/64 2.6 (koala) w/make check-vfd
* [svn-r21126] Description:Quincey Koziol2011-07-1917-166/+507
| | | | | | | | | | | | | Clean up some compiler warnings, but mainly an interim checkin on the path of reducing code coupling in the library by removing most of the places which were accessing H5F package definitions. Tested on: Mac OS X/32 10.6.8 (amazon) w/debug FreeBSD/32 8.2 (loyalty) w/debug FreeBSD/64 8.2 (freedom) w/debug Linux/64 2.6 (heiwa) w/debug Linux/64 2.6 (ember) w/parallel
* [svn-r21125] Description:Quincey Koziol2011-07-191-31/+31
| | | | | | | | | | | | Correct char arrays that were too small for strings defined. Also, change cleanup to work correctly. Tested on: Mac OS X/32 10.6.8 (amazon) w/debug FreeBSD/32 8.2 (loyalty) w/debug FreeBSD/64 8.2 (freedom) w/debug Linux/64 2.6 (heiwa) w/debug Linux/64 2.6 (ember) w/parallel
* [svn-r21124] Issue 2763 - adding OAPL_ID as a new parameter to ↵Raymond Lu2011-07-193-5/+13
| | | | | | | | | H5Rdereference. A followup commit for r21117. I made 2 changes: 1. Quincey changed H5P_DATASET_ACCESS_DEFAULT to H5P_DEFAULT for the tests that call H5Rdereference. Inside H5R_dereference, I assigned H5P_DATASET_ACCESS_DEFAULT to OAPL_ID if it is H5P_DEFAULT. 2. I added the test for invalid OAPL_ID in trefer.c. Tested on jam, koala, heiwa.
* [svn-r21121] Description:Quincey Koziol2011-07-1814-57/+57
| | | | | | | | | Switch from H5P_DATASET_ACCESS_DEFAULT to H5P_DEFAULT for calls to H5Rdereference2(). Tested on: Mac OS X/32 10.6.8 (amazon) w/debug (too minor to require h5committest)
* [svn-r21120] Description:Quincey Koziol2011-07-184-6/+214
| | | | | | | | | | | Check in ugly version of fix for Jira #7638. I'm going to leave the issue open in Jira and when the library has been refactored to use shared file pointers (instead of top file pointers) for file operations, I'll uncomment the check in src/H5Oshared.c Tested on: Mac OS X/32 10.6.8 (amazon) w/debug (too small for h5committest)
* [svn-r21119] Description:Quincey Koziol2011-07-182-15/+3
| | | | | | | | | Simplify use of property lists to H5Rdereference, and switch to use H5Rdereference2. Tested on: Mac OS X/32 10.6.8 (amazon) (too small to require h5committest)
* [svn-r21118] Issue 2763 - followup commit for r21117 of H5Rdereference. I ↵Raymond Lu2011-07-182-3/+15
| | | | | | forgot to update the C examples. Tested on jam - simple change.
* [svn-r21117] Issue 2763 - I added a new parameter of object access property ↵Raymond Lu2011-07-1821-86/+242
| | | | | | list to the function H5Rdereference. It's called H5Rdereference2 now. H5Rdereference function has been deprecated to H5Rdereference1. I also added some test cases in trefer.c. Tested on jam, heiwa, and koala.
* [svn-r21113] Description:Jonathan Kim2011-07-182-3/+3
| | | | | | | | | | | | | | | Revert the previous makefile change as release snapshot test failed with MANIFEST check. Don't clean 'testfiles' dir via 'make distclean' for the case of build&test in source dir. In regular daily testings, we build&test in seperate dir from source dir, so no issues occurred. However for the release snapshot test, it seems that we build&test in source dir. The previous change can remove testfiles in source dir if build&test is done in source dir becasue currently the dir name 'testfiles' is same in source dir and test dir. Other task (7602) may change to use different name for the test directory, so 'make distclean' can do its job without interrupting MANIFEST.
* [svn-r21110] Renamed test file to more descriptive nameAllen Byrne2011-07-181-2/+2
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* [svn-r21109] Renamed test files to more descriptive nameAllen Byrne2011-07-181-1/+1
| | | | Tested: local linux (after clearing old testfiles)
* [svn-r21108] Renamed test files to more descriptive nameAllen Byrne2011-07-184-8/+8
| | | | Tested: local linux
* [svn-r21105] Fixed two bugs:Peter Cao2011-07-159-94/+136
| | | | | | | - h5repack: h5repack failed to copy dataset if the layout is changed from chunked with unlimited dims to contiguous. (PC -- 2011/07/15) - h5diff: "--delta" option considers two NaN of the same type are different, which is wrong based on http://www.hdfgroup.org/HDF5/doc/RM/Tools.html#Tools-Diff. (PC -- 2011/07/15)
* [svn-r21101] HDFFV-7639Mike McGreevy2011-07-1417-794/+288
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Purpose: Remove H5_MPI_SPECIAL_COLLECTIVE_IO_WORKS and H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS #defines from source. Description: Two advanced parallel functionalities, special collective IO and complex derived datatypes, are not supported by older implementations of mpi, and thus our code limits the use of these features with #ifdefs and has checks in configure to set them (or not). Unfortunately, configure can't actually run a parallel check to see if these features are working (nor not) so it resorts to looking in the config files where they are explicity enabled or disabled based on versions of mpi, sytems being built on, or for no documented reason at all (i.e. just set to on or off as some 'default'). Overriding these settings is easy if need be, provided it is known that it needs to be done to get improved performance, and oftentimes it is not. Most new MPI implementations successfully handle the functionality requested when these #defines are set, and many of the "turn these features off" cases in the config files are for old (> 5 years) versions of MPI and retired systems (such as NCSA's tungsten). Therefore, the decision has been made to remove the support for these old versions of MPI and systems that cannot handle these behaviors. The #ifdefs and supporting setup in the config/ files and configure script has been removed, and the code executed when these options were not set removed from the source. In passing, this commit also cleans up some whitespace issues in both t_mpi.c and H5Dmpio.c. Furthermore, in t_mpi.c, the special collective IO test was not getting regularly run due to it being written to work only with four processes (we regularly test with six, previously with three), and thus it failed when actually run due to an out of bounds data buffer assignment. It has been modified to run at any number of processes greater than four, and the memory problem has been fixed so the test passes. Tested: jam, h5committest, ember
* [svn-r21091] Replace #ifdef WIN32 around 64 bit integers with ↵Allen Byrne2011-07-112-153/+126
| | | | | | H5_SIZEOF_LONG_LONG. This is set if 64-bit integers are supported. Tested: local linux
* [svn-r21088] Add dependicies for tests to address issues when run in parallelAllen Byrne2011-07-111-0/+10
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* [svn-r21086] Add new clear-objects tests to valgrind ignore listAllen Byrne2011-07-111-0/+8
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