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* [svn-r21628] Description:Scot Breitenfeld2011-10-202-3/+1
| | | | | | | | | | | | Removed line: $(RM) $(DESTDIR)$(includedir)/H5f90i*.h These *.h files are needed for HL_NPOESS and should not be removed when make clean is specified. The Daily Test installs the file using the deploy script, but then runs make clean which removes the file, so the files are not there when we try to compile HL_NPOESS causing an error.
* [svn-r21619] Description:Scot Breitenfeld2011-10-201-13/+14
| | | | | | | | Changed the API to pass type(h5o_info_t) instead of a C pointer to the derived type. Tested: jam (gfortran and pgi)
* [svn-r21617] Description:Quincey Koziol2011-10-202-413/+438
| | | | | | | | | | Recalculate the size of destination attribute message when the source and destination versions are different during an object copy operation. (Jira: HDFF-7718) Tested on: Mac OS X/32 10.7.2 (amazon) w/debug (h5committest upcoming)
* [svn-r21615] Robodoc comment changes.Scot Breitenfeld2011-10-204-158/+147
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* [svn-r21613] Ported express test tunings and a minor edit back to John Mainzer2011-10-191-3/+3
| | | | | | testpar/t_shapesame.c tested with h5committest
* [svn-r21610] Purpose: Fix bug 7776Neil Fortner2011-10-191-6/+18
| | | | | | | | | | | Description: When H5Ocopy failed due to attempting to expand an invalid reference in an attribute (or at any point after the destination object header was inserted into the cache), it failed to clean up correctly. Modified H5O_copy_header_real to keep track of whether the object header was inserted and take appropriate action on failure. Tested: fedora (too minor for full commit test)
* [svn-r21603] Purpose: Add generic skip list implementationNeil Fortner2011-10-1815-123/+311
| | | | | | | | | | | | | Description: Added new H5SL_TYPE_GENERIC skip list type, which uses void *'s as keys and a client-supplied callback for key comparison. This was added to support the upcoming "merge named datatype" feature for H5Ocopy, but may be used in other places as well. Also added testing. Also fixed a potential bug with the H5SL_TYPE_OBJ implementation, and added testing for that. Tested: jam, koala, heiwa (h5committest), durandal
* [svn-r21601] Converted some C stdlib functions to use the HD prefix in ↵Dana Robinson2011-10-181-19/+19
| | | | | | H5Omtime.c Tested on local linux (minor change)
* [svn-r21597] Issue 7701 - fix for H5LTdtype_to_text. I made two ↵Raymond Lu2011-10-181-85/+87
| | | | | | corrections: 1. I changed all snprintf to HDsnprintf; 2. I corrected all wrong length passed to snprintf which cause Mac machines to fail. Tested on jam. But I tested the same change for 1.8 branch on jam, koala, linew, Windows, and Apple.
* [svn-r21596] Correct large file support testAllen Byrne2011-10-182-2/+60
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* [svn-r21593] Add CMake option to disable packaging component: needed to ↵Allen Byrne2011-10-173-2/+10
| | | | | | avoid configuration warning when using Visual Studio Express versions on windows. Tested: Bangan
* [svn-r21587] Snapshot version 1.9 release 95HDF Tester2011-10-1614-30/+30
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* [svn-r21586] Description:Jonathan Kim2011-10-147-18/+64
| | | | | | | | | Added a funtion to reset dataset & hyperslab buffer size for h5repack from an environment variable. This is performance debugging purpose for now. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE), cmake
* [svn-r21584] Removed H5L_info_t definition from test source, it's defined in ↵Scot Breitenfeld2011-10-141-13/+0
| | | | | | the hdf5 library. tested: jam (intel)
* [svn-r21583] Fixed robodoc headers in comments.Scot Breitenfeld2011-10-141-91/+111
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* [svn-r21577] Maintenance: Added F2003 infoElena Pourmal2011-10-141-11/+48
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* [svn-r21571] Revision of the fix for Issue 7701 (H5LTdtype_to_text): I ↵Raymond Lu2011-10-141-89/+88
| | | | | | revised the code per Quincey's comments. (I changed the 1.8 branch first. I'm aware of that.) Tested on jam. But I tested the same change in 1.8 branch with h5committest.
* [svn-r21570] Description: Cleaned up comments and variable names to match ↵Scot Breitenfeld2011-10-141-9/+8
| | | | RM, no source changes.
* [svn-r21564] Improve testing for H5Pset_libver_bounds (bring in line with ↵Neil Fortner2011-10-141-23/+41
| | | | | | 1.8 branch) Tested: durandal (too minor for full h5committest)
* [svn-r21562] Improve testing for H5Pset_libver_boundsNeil Fortner2011-10-141-2/+34
| | | | Tested: durandal (too minor for full h5committest)
* [svn-r21561] Description:Quincey Koziol2011-10-146-34/+115
| | | | | | | | | | | | Correct error in loading local heap prefix & data block from the file. Sometimes the local heap's prefix could be loaded before the data block (e.g. using H5Oget_info), but then when the data block was loaded later, the free list information would get lost, causing the heap's size to grow larger than necessary. This is Jira bug #HDFFV-7767 Tested on: Mac OS X/32 10.7.2 (amazon) w/debug (h5committest coming up)
* [svn-r21556] Purpose: Fix bug in H5OcopyNeil Fortner2011-10-1319-293/+416
| | | | | | | | | | | | | Description: H5Ocopy could get confused when copying a named datatype containing an attribute which used that named datatype as its datatype. This happened because H5Ocopy would recurse into the attribute's datatype before the object the attribute was in was fully copied (i.e. before the "post-copy" pass). Modified H5Ocopy to avoid recursing before the post-copy step in this case. Required many changes, including to how non-committed shared messages are copied. Tested: jam, koala, heiwa (h5committest); durandal
* [svn-r21553] Maintenance: Added an entry for the Fortran DS wrappers.Elena Pourmal2011-10-131-1/+11
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* [svn-r21552] Maintenance: Addressed HDFFV-915 - investigate if H5open and ↵Elena Pourmal2011-10-132-29/+18
| | | | | | | | | | | | | H5close are needed in the corresponding Fortran wrappers. Solutions: The calls were not needed and were removed from the C stubs h5open_c and h5close_c for the correspnding Fortran subroutines h5open_f and h5close_f. Platforms tested: jam with gcc and gfortran, PGI and Intel koala with PGI and Intel linew with the standard Sun compilers
* [svn-r21549] Removed unused references to USE_STDIO and MAX_BUF in Windows ↵Dana Robinson2011-10-131-3/+0
| | | | configuration CMake file.
* [svn-r21546] Reverts 21497 (deep string copy of log file name). This string ↵Dana Robinson2011-10-131-2/+4
| | | | is copied correctly deep in the H5P code. Tested on local linux (trivial change).
* [svn-r21538] Removed obsolete Windows STDIO VFD configuration options from ↵Dana Robinson2011-10-132-17/+0
| | | | | | CMake config files. Tested on Windows
* [svn-r21537] Description:Scot Breitenfeld2011-10-132-97/+123
| | | | | | Modified h5oget_info_by_name_f to return a derive type h5o_info_t Tested: jam( gfortran, pgi, intel)
* [svn-r21536] Desciption: Removed H5Eget_auto_f from source, moved to ↵Scot Breitenfeld2011-10-134-303/+64
| | | | | | | | F2003_new branch for further testing. Tested: jam (gnu)
* [svn-r21535] Description:Scot Breitenfeld2011-10-136-473/+711
| | | | | | | Updated to the robodoc headers comments, cleaned up the spacing of the source code which is included in the documenaton. Tested: jam (intel)
* [svn-r21529] Description:Quincey Koziol2011-10-124-4/+78
| | | | | | | | Update tracing information with new types introduced in "actual I/O mode" query routines. Tested on: bin/reconfigure on jam
* [svn-r21525] Description:Scot Breitenfeld2011-10-112-191/+45
| | | | | | | | | Removed hard-coded check of compatible Fortran 2003 compilers; replaced with simple check program for required F2003 features. Does not check for known bugs in compilers, tests will fail for those compilers. Tested: jam (gnu 4.1, 4.5, intel, pgi) linew (default)
* [svn-r21523] Added CLOCK_GET_TIME define to cmake configureAllen Byrne2011-10-112-0/+18
| | | | Tested: local linux
* [svn-r21520] Changed the size of off_t on VMS to 4 bytes from 8 (as reported ↵Dana Robinson2011-10-111-17/+17
| | | | | | by a test program run on VMS). Will be tested on VMS when this is pushed to the 1.8 branch.
* [svn-r21518] - Added definition for HDfseek() to be used later.Dana Robinson2011-10-111-1/+5
| | | | | | - Added comment about requiring _O_BINARY being set on Windows to avoid CR-LF issues. Tested on Windows (minor changes).
* [svn-r21517] - Added checks for clock_gettime() to configure.in.Dana Robinson2011-10-115-115/+325
| | | | | | | | Tested on Linux, FreeBSD, Solaris, MacOSX to ensure they are found correctly and everything builds. No code currently relys on clock_gettime(). - Brought Windows and VMS H5pubconf.h files into sync with the Linux file. Tested on Windows. Ray will test on VMS when this is pushed to the 1.8.x branch.
* [svn-r21511] Synchronize macros for naming with other librariesAllen Byrne2011-10-111-13/+6
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* [svn-r21510] Change to comments.Dana Robinson2011-10-101-23/+7
| | | | Just checked to make sure it still compiled on Windows.
* [svn-r21508] Revoked svn check-ins 20913 and 20921 (fix for HDFFV-7579) ↵Dana Robinson2011-10-107-306/+8
| | | | pending a careful evaluation of enum conversion behavior.
* [svn-r21506] Updated svn properties as needed.Dana Robinson2011-10-106-0/+0
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* [svn-r21505] Updated svn properties as needed in source root.Dana Robinson2011-10-101-0/+0
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* [svn-r21504] Updated svn flags as needed on source files from H5A* to H5C*.Dana Robinson2011-10-101-0/+0
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* [svn-r21502] - Removed Windows VFD code. H5Pset_fapl_windows() actually ↵Dana Robinson2011-10-102-1057/+59
| | | | | | | | sets the SEC2 driver, though it will still report H5FD_WINDOWS. - Set svn:eol-style and svn:keyword properties on H5FDwindows.c/h. Tested on 64- and 32-bit Windows 7 (doesn't affect non-Windows platforms).
* [svn-r21501] - Propagated Windows VFD tweaks to SEC2 and log VFDs.Dana Robinson2011-10-102-235/+353
| | | | | | | | | | - Created typedefs and #defines to make POSIX I/O type-safe on Windows and true POSIX platforms. - Added pre-checks and removed post-checks for POSIX I/O sizes. When the number of bytes to be sent exceeds the maximum return value, the operation is split into smaller subsets. - General code tidying and cleanup. Tested on: jam (64-bit linux), jam + threadsafe, jam + parallel, Windows 7 (64- and 32-bit), freedom (64-bt BSD).
* [svn-r21499] Snapshot version 1.9 release 94HDF Tester2011-10-0914-30/+30
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* [svn-r21497] Changed H5Pset_fapl_log() to deep copy the log file name ↵Dana Robinson2011-10-091-1/+4
| | | | | | instead of copying the pointer. Tested on jam (simple change).
* [svn-r21496] - H5MM_strdup() and H5MM_xstrdup() comments changed to ↵Dana Robinson2011-10-091-28/+25
| | | | | | | | correctly reflect how they respond to an input NULL string. - H5MM_xstrdup() now reports memory allocation errors via the HDF5 error stack (was previously an assert). Tested on local Windows via ctest (trivial change).
* [svn-r21493] Add new mach/mach_time.h header check.Allen Byrne2011-10-072-0/+4
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* [svn-r21490] The configuration file isn't executable!Dana Robinson2011-10-071-0/+0
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* [svn-r21489] Bug:Albert Cheng2011-10-071-4/+4
| | | | | | | | | | | h5dump was used in test script but was not invoked by RUNSERIAL. THis does not work in batch machines like Blue Gene in LLNL. Solution: Added $RUNSERIAL to invoke $H5DUMP_BIN. Tested: LLNL BlueGene (udawn)
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