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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-04-183-53/+26
|\ | | | | | | | | | | * commit 'e217bd113db96b96b485de82395688ca2313918a': Resolve memory leak of last API context, by freeing it in H5CX terminate routine. Revert "Close memory leak of last API context when shutting library down."
| * Merge pull request #1034 in HDFFV/hdf5 from fix_api_context_fix to developQuincey Koziol2018-04-183-53/+26
| |\ | | | | | | | | | | | | | | | * commit 'bcab84db9f291920ed0fe321116405f73eaddfa5': Resolve memory leak of last API context, by freeing it in H5CX terminate routine. Revert "Close memory leak of last API context when shutting library down."
| | * Resolve memory leak of last API context, by freeing it in H5CX terminateQuincey Koziol2018-04-183-35/+11
| | | | | | | | | | | | routine.
| | * Revert "Close memory leak of last API context when shutting library down."Quincey Koziol2018-04-182-21/+18
| |/ | | | | | | This reverts commit 0bd3634dc5747d88582a966050896bad57acb892.
* | TRILABS-19 All c code INCLUDE_DIRECTORIES convertedAllen Byrne2018-04-183-16/+19
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* | TRILABS-19 Initial conversion of include_directories to targetsAllen Byrne2018-04-1762-489/+344
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* Merge pull request #1033 in HDFFV/hdf5 from fix_h5cx_pop_special_leak to developQuincey Koziol2018-04-172-18/+21
|\ | | | | | | | | * commit '0bd3634dc5747d88582a966050896bad57acb892': Close memory leak of last API context when shutting library down.
| * Close memory leak of last API context when shutting library down.Quincey Koziol2018-04-172-18/+21
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* Merge pull request #1030 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2018-04-121-0/+1
|\ | | | | | | | | * commit '9a8e1e1a7cad7674de2b183ba530affc0f13c615': Add missing file
| * Add missing fileAllen Byrne2018-04-121-0/+1
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* Merge pull request #1024 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2018-04-1131-380/+1132
|\ | | | | | | | | | | | | | | | | | | | | * commit '34e3e3ef17f29b721780941866a3ad4c261b7c05': Whitespace changes Whitespace and test reclassify Move two more functions from unit tests Reorder of tests for debug APIs option HDFFV-10444 fix soversion numbers for libraries Fix Java test for DEBUG_APIS Use var instead of absolute number
| * Whitespace changesAllen Byrne2018-04-101-4/+2
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| * Whitespace and test reclassifyAllen Byrne2018-04-108-68/+42
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| * Move two more functions from unit testsAllen Byrne2018-04-104-61/+59
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| * Reorder of tests for debug APIs optionAllen Byrne2018-04-102-18/+16
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| * HDFFV-10444 fix soversion numbers for librariesAllen Byrne2018-04-1017-54/+65
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| * Fix Java test for DEBUG_APISAllen Byrne2018-04-099-307/+1080
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| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-04-097-21/+18
| |\ | | | | | | | | | | | | | | | * commit '3211e907f4f9349ba7510d70cfbcc6ee36d99c58': Remove vestiges of H5_DEBUG_BUILD macro, switching it to the more standard H5CX_DEBUG form. Minor warning cleanup while working on VOL issues.
| * \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-04-06331-20748/+23400
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '048ae59d2970dd21810577c999f756c028b6faaf': Correct errors with non-"instrumented library" builds (production & parallel, generally speaking). Update java error stack tests Revert using H5MF_sect_small_can_shrink and H5MF_sect_small_shrink for the file's free space manager (and add a comment about them). Add comment for the file flush when the file low / high bounds are changed after a file is open. Expanded comments abuot H5CX_t fields. Add an assert to verify that we don't write when between MPI_Barrier() calls during a flush. Add comments for internal structs. Remove redundant 'is_collective' parameter from H5CX_set_loc. Correct typo in comment. Revert some tangential code cleanups. Add API context source files to CMake configuration file. Corrections for parallel I/O & tests. Update handling of reporting for breaking collective I/O when the default DXPL is used. Update encoded DXPLs to reflect changes in properties. Correct typo for error checking malloc return value. Refactor H5CX code to reduce duplication. Cleanup API context function usage. Add API context interface and use it throughout the library.
| * | | Use var instead of absolute numberAllen Byrne2018-04-051-2/+2
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* | | | Merge pull request #1023 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2018-04-101-2/+2
|\ \ \ \ | |_|_|/ |/| | | | | | | | | | | * commit '05ef85b02dc88ebd738d1332476ae1765a25b191': fixed return integer type of C function
| * | | fixed return integer type of C functionM. Scot Breitenfeld2018-04-101-2/+2
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* | | Merge pull request #1019 in HDFFV/hdf5 from ~KOZIOL/hdf5:update_api_context ↵Quincey Koziol2018-04-062-3/+3
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '62b4200f580e9ea0b95cbc218bfae50ae38ef25d': Remove vestiges of H5_DEBUG_BUILD macro, switching it to the more standard H5CX_DEBUG form.
| * | | Remove vestiges of H5_DEBUG_BUILD macro, switching it to the moreQuincey Koziol2018-04-062-3/+3
|/ / / | | | | | | | | | standard H5CX_DEBUG form.
* | | Merge pull request #1018 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to ↵Dana Robinson2018-04-065-18/+15
|\ \ \ | |_|/ |/| | | | | | | | | | | | | | develop * commit '02039e0a91cf1baae46d52a77c521fc6357b7c90': Minor warning cleanup while working on VOL issues.
| * | Minor warning cleanup while working on VOL issues.Dana Robinson2018-04-065-18/+15
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* | Merge pull request #991 in HDFFV/hdf5 from merge_func_enter_vol to developQuincey Koziol2018-04-05331-20748/+23400
|\ \ | |/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Commit API context and related changes * commit '01a783dbee8160641a5a682f2116ffbd1ac123fe': Correct errors with non-"instrumented library" builds (production & parallel, generally speaking). Update java error stack tests Revert using H5MF_sect_small_can_shrink and H5MF_sect_small_shrink for the file's free space manager (and add a comment about them). Add comment for the file flush when the file low / high bounds are changed after a file is open. Expanded comments abuot H5CX_t fields. Add an assert to verify that we don't write when between MPI_Barrier() calls during a flush. Add comments for internal structs. Remove redundant 'is_collective' parameter from H5CX_set_loc. Correct typo in comment. Revert some tangential code cleanups. Add API context source files to CMake configuration file. Corrections for parallel I/O & tests. Update handling of reporting for breaking collective I/O when the default DXPL is used. Update encoded DXPLs to reflect changes in properties. Correct typo for error checking malloc return value. Refactor H5CX code to reduce duplication. Cleanup API context function usage. Add API context interface and use it throughout the library.
| * Merge pull request #1015 in HDFFV/hdf5 from ↵Allen Byrne2018-04-053-43/+49
| |\ | | | | | | | | | | | | | | | | | | ~BYRN/hdf5_adb:merge_func_enter_vol to merge_func_enter_vol * commit '8c9661ce4d42090fb12c26bedc01af9ecc10b8e2': Update java error stack tests
| | * Update java error stack testsAllen Byrne2018-04-033-43/+49
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| * | Merge remote-tracking branch 'origin/develop' into merge_func_enter_volQuincey Koziol2018-04-055-981/+1452
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* | | Merge pull request #1017 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2018-04-045-981/+1452
|\ \ \ | | | | | | | | | | | | | | | | * commit 'fa0d7aec1030567f3daa5bd433c86f4dc326cb89': Update RELEASE.txt, HISTORY-1_10.txt and INSTALL files with changes from HDF5-1.10.2 release.
| * | | Update RELEASE.txt, HISTORY-1_10.txt and INSTALL files with changes fromlrknox2018-04-035-981/+1452
|/ / / | | | | | | | | | HDF5-1.10.2 release.
| * | Correct errors with non-"instrumented library" builds (production & parallel,Quincey Koziol2018-04-052-0/+8
| |/ | | | | | | generally speaking).
| * Revert using H5MF_sect_small_can_shrink and H5MF_sect_small_shrink for theQuincey Koziol2018-04-021-2/+14
| | | | | | | | file's free space manager (and add a comment about them).
| * Add comment for the file flush when the file low / high bounds are changedQuincey Koziol2018-04-011-0/+19
| | | | | | | | after a file is open.
| * Merge remote-tracking branch 'origin/develop' into merge_func_enter_volQuincey Koziol2018-04-014-133/+171
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* | Merge pull request #1013 in HDFFV/hdf5 from ↵Dana Robinson2018-03-303-248/+334
|\ \ | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:vol_normalization to develop * commit 'b8f56d22dfd754715d10accc5997fe923bdb7593': Created internal functions for a couple of H5F calls.
| * | Created internal functions for a couple of H5F calls.Dana Robinson2018-03-303-248/+334
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| * Merge remote-tracking branch 'origin/develop' into merge_func_enter_volQuincey Koziol2018-03-294-36/+56
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* | Merge pull request #1006 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2018-03-294-35/+55
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'ba043154e989fce8737df0f2e8999d32bf38e303': Correct email Update URLs Correct hdf5 reference Update CDash info Update CMake reference and check CDash reference Update URLs Update section on using CMake source package
| * | Correct emailAllen Byrne2018-03-291-1/+1
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| * | Update URLsAllen Byrne2018-03-292-4/+4
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| * | Correct hdf5 referenceAllen Byrne2018-03-291-1/+1
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| * | Update CDash infoAllen Byrne2018-03-292-4/+16
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| * | Update CMake reference and check CDash referenceAllen Byrne2018-03-291-2/+2
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| * | Update URLsAllen Byrne2018-03-291-3/+3
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| * | Update section on using CMake source packageAllen Byrne2018-03-291-24/+32
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* | | Merge pull request #1009 in HDFFV/hdf5 from ~LKURZ/hdf5_lck:develop to developAllen Byrne2018-03-291-1/+1
|\ \ \ | |/ / |/| | | | | | | | * commit '8bfa19a8b53e7bf63605efc4c1fdb8aeff97ebce': update email address
| * | update email addressL Kurz2018-03-291-1/+1
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| * Merge remote-tracking branch 'origin/develop' into merge_func_enter_volQuincey Koziol2018-03-294-20/+149
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