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* [svn-r23434] Improvement: DFFV-8245Albert Cheng2013-03-221-4/+35
| | | | | | | | | | | | | | Use Clang as the compiler for the Mac platform. Changed all Mac to use clang/clang++ as the default C and CXX compilers if not provided by the user. Still use gfortran as the default fortran compiler since Apple does not provide any fortran compiler. Tested: passed all three macs OS, snow leapord (fred), lion (duck) and mountain lion (wren). Also passed test using Apple gcc, Gnu gcc, Intel as the C compilers and all corresponding CXX compilers fits in. Did not run h5committest or other non-mac platform since this change affect Apple platforms only.
* [svn-r23433] Fix for HDFFV-7996.Larry Knox2013-03-223-0/+42
| | | | | | | Compile scripts will add paths for external libraries linked to executable files that they create. Eliminates need for LD_LIBRARY_PATH for szip in locations not known to ld. Teted on platypus and emu (64bit) in addition to h5committest.
* [svn-r23431] Fix for HDFFV-8141.Larry Knox2013-03-223-34/+65
| | | | | | | | Changes default value for USE_SHARED_LIB in compile scripts to yes when static is disabled. Comments in scripts about the order of flag variables containing library paths was also corrected. Tested with h5committest on duck, jam, koala, and ostrich in addition to specific testing for the compile script change.
* [svn-r23428] Description:Binh-Minh Ribler2013-03-221-3/+3
| | | | | | Fixed bug HDFFV-4272. Just typos in documentation. Platform tested: Jam
* [svn-r23427] Purpose: Fix bug HDFFV-8067Binh-Minh Ribler2013-03-2211-27/+31
| | | | | | | | | | | | | | | | | | | | | | Description: + The C++ test failed with the new PGI compilers versions 12.4 and 12.5 + An exception thrown by an internal function, which was called by a constructor, was not propagating to the test program during the stack unwinding, so it couldn't be caught by the test and the program terminated. + Various trials and errors indicated that the problem is where an STD string converted to a char* being passed to the internal function, but confirmation has not been found yet. It could be a compiler bug. Solution: + Added a try/catch in the constructor around the internal function and re-throw the exception when it is caught. This is a workaround. + Unrelated minor fixes: removed unused variables and MESSAGE's; commented out tvlstr.cpp/test_read_vl_string_attribute because it may be redundant, and commented out H5Tpkg.h inclusion because TEST_ALIGNMENT is not added yet and probably not necessary in the C++ API. Platforms tested: Linux/32 2.6 (jam) with PGI compilers Linux/32 2.6 (jam) with GNU compilers Linux/64 2.6 (koala)
* [svn-r23417] Fixes an issue (HDFFV-8159) where uninitialized memory was ↵Dana Robinson2013-03-211-8/+11
| | | | | | | | | | | | | being read during variable-length type conversion. All variable-length type conversion buffers are now initialized to contain 0s on allocation. Tested on: jam(w/ fortran, C++, parallel, parallel fortran) ostrich This is a very small change (basially changing malloc to calloc) and is unlikely to cause issues on other platforms.
* [svn-r23415] Description:Quincey Koziol2013-03-211-2/+2
| | | | | | | Avoid using fpclassify() for detecting zero/non-zero values. Tested on: Mac OSX/64 10.8.3 (amazon) w/debug
* [svn-r23412] Add test depends on clear test. Occasional failures.Allen Byrne2013-03-211-0/+7
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* [svn-r23411] HDDFV-8322: Free allocations in command line parsing.Allen Byrne2013-03-211-36/+18
| | | | Tested: local linux
* [svn-r23410] HDFFV-8264: Using F2003, build fails on Fedora with undefined ↵Scot Breitenfeld2013-03-211-3/+4
| | | | | | | | | | | reference to __h5r_MOD_h5rget_region_region_f This turned out being an issue with configure. The reporter submitted a patch which fixed the fact that we should not be setting AM_FCFLAGS (an automake variable) with FFLAGS (a user variable). I removed this, and we now only set FFLAGS if the environment variable is set, otherwise we don't. Tested: jam (gnu)
* [svn-r23407] Purpose: Jonathan Kim2013-03-204-10/+26
| | | | | | | | | | | | | HDFFV-8214 - h5repack failed converting small chunked dataset (size < 1K) to contiguous layout. Description: h5repack failed converting small chunked dataset (size < 1K) to contiguous layout. The first case was when chunk dim is bigger than the dataset dim (at leat one), h5repack failed with displaying error stacks. The other case is when chunk dim is smaller than the dataset dim, h5repack failed to change layout. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), emu (solaris-BE),fred (mac64-LE), Windows (32-LE cmake), cmake (jam)
* [svn-r23395] Description:Quincey Koziol2013-03-207-611/+619
| | | | | | | | | | | | Bring Coverity changes from branch to trunk: r20682: fixed coverity: 76, 77, 635, 636, 1164, 1165, 1166, 1121, 1122, 1117, 1343 Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
* [svn-r23388] HDDFV-8322: Free allocations in parse_command_line function.Allen Byrne2013-03-191-2/+11
| | | | Tested: local linux
* [svn-r23379] HDFFV-8297 h5fc does not recognize files ending in .f95, .f03, ↵Scot Breitenfeld2013-03-191-2/+7
| | | | | | | | and .f08 as source files added missing extensions. Tested: jam (gnu)
* [svn-r23366] Removed the H5Pset_dxpl_multi and H5Pget_dxpl_multi functions ↵Dana Robinson2013-03-183-184/+0
| | | | | | | | | | | | | | | from the library. The intended functionality for them was never fully implemented and they are fundamentally broken. The functions were removed from the C and C++ interfaces. They were not exported in the Fortran interface. Tested on: jam(c++/fortran/hl) I tested using check-vfd to ensure the multi VFD still works properly. There is no reason to test this on other machines or on parallel.
* [svn-r23361] Snapshot version 1.9 release 148HDF Tester2013-03-1713-26/+26
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* [svn-r23354] Close prop list varAllen Byrne2013-03-151-4/+8
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* [svn-r23353] Correct target nameAllen Byrne2013-03-151-3/+3
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* [svn-r23341] Snapshot version 1.9 release 147HDF Tester2013-03-1013-26/+26
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* [svn-r23338] Updated with HDFFV-8305 fix.Albert Cheng2013-03-071-1/+10
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* [svn-r23336] Discovered some typo in the last added comment. Rewrote the ↵Albert Cheng2013-03-071-3/+3
| | | | | | comment. Tested: no need since only comments are changed.
* [svn-r23333] Update CMake documentation, remove obsolete info for windows.Allen Byrne2013-03-064-670/+483
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* [svn-r23332] HDFFV-8322: for valgrind testing, split-up testhdf5 tests by ↵Allen Byrne2013-03-062-3/+3
| | | | | | excluding and running long running tests separately. Tested: local linux
* [svn-r23329] Bug fix: HDFFV-8305Albert Cheng2013-03-061-1/+4
| | | | | | | | Some systems, like Mac, strings inspect library files and older versions of strings maybe know newer library format, resulting in errors. Make it read the file as stdin, avoiding this problem. Tested: h5committest. all passed.
* [svn-r23327] Added the reference of the requirement of POSIX Compliance.Albert Cheng2013-03-051-6/+22
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* [svn-r23326] Refactor testhdf5 for memcheck testing. Test longest running ↵Allen Byrne2013-03-051-3/+16
| | | | options using only.
* [svn-r23325] DescriptionScot Breitenfeld2013-03-057-448/+616
| | | | | | | | | | | ------------ Fix for: HDFFV-8149: h5pset_external_f API - the offset is declared integer which can cause problem if use 64-bit integer Added new type off_t, modified source files and added a new test. Tested (jam, intel, gnu)
* [svn-r23323] Snapshot version 1.9 release 146HDF Tester2013-03-0313-26/+26
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* [svn-r23322] HDFFV-8322: Close resources, found from valgrind testingAllen Byrne2013-03-015-7/+30
| | | | Tested: local linux
* [svn-r23320] Close resources, found from valgrind testingAllen Byrne2013-02-271-0/+6
| | | | Tested: local linux
* [svn-r23317] Fix indentationAllen Byrne2013-02-251-3/+3
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* [svn-r23314] Correct typo in DEPENDSAllen Byrne2013-02-251-1/+1
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* [svn-r23313] Description:Quincey Koziol2013-02-259-77/+98
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring changes from Coverity branch to the trunk: r20612: Changed string functions to versions with string length to fix coverity issues 922, 942 and 943. r20614: Use HDsnprintf. --gh r20675: Fix for coverity #1714 due to the fix for #810. Use HDfree() instead of H5MM_xfree(). r20678: Repaired coverity issue #598 -- failure to check return value from a call to fstat(), or to tidy up in the event of failure. r20679: Use HDstrncpy. --gh r20681: Use HDstrncat and HDstrncpy. --gh Tested on: Mac OSX/64 10.8.2 (amazon) w/Debug, etc. (too minor to require h5committest)
* [svn-r23311] Snapshot version 1.9 release 145HDF Tester2013-02-2413-26/+26
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* [svn-r23310] Correct duplicate test commandAllen Byrne2013-02-211-1/+0
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* [svn-r23308] HDFFV-8311: Correct test dependencyAllen Byrne2013-02-213-308/+266
| | | | Tested: local linux
* [svn-r23307] HDFFV-8311: Correct test dependencyAllen Byrne2013-02-202-219/+199
| | | | | | Remove h5ls references Tested: local linux
* [svn-r23306] HDFFV-8311: Correct test dependencyAllen Byrne2013-02-201-153/+204
| | | | Tested: local linux
* [svn-r23305] HDFFV-8257: szip still used even if headers are not found. ↵Allen Byrne2013-02-1846-404/+444
| | | | | | Change configure to test the result of the CHECK HEADERS call before checking for the library. Tested: local linux, h5committest
* [svn-r23304] Purpose:Jonathan Kim2013-02-185-6/+16
| | | | | | | | | | | | HDFFV-7643 - h5diff - incorrect exit-code returns for extra attribute exist Description: h5diff: Fixed to return correct exit code 1 when detect unique attribute. Prior to this fix, h5diff returned exit code 0 indicating two files are identical. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), fred (mac64-LE), emu (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r23297] Temporary fix: PGI COMPILERS seem to have a bug in the INQUIRE ↵Scot Breitenfeld2013-02-181-0/+4
| | | | | | | | function, waiting for an answer from PGI how to resolve the problem. Tested: jam (pgi compiler)
* [svn-r23296] Fix HDFFV-8312: Problem using NAG compiler and F2003 interface Scot Breitenfeld2013-02-181-17/+17
| | | | | | added character bounds for C_LOC arguments. Tested: jam (gnu)
* [svn-r23295] Did not intend to check in this file with the previous ci.Scot Breitenfeld2013-02-181-6/+2
| | | | reverted check in.
* [svn-r23294] Related to: HDFFV-8265Scot Breitenfeld2013-02-1834-34/+34
| | | | | | | Fortran2003 option does not work under windows; Need to manage .def files more efficiently Changed the comment notes from adding to the 'hdf5_fortrandll.def' to instead adding to the 'hdf5_fortrandll.def.in' file.
* [svn-r23293] Fix for HDFFV-8268: Fortran wrapper for H5Fget_file_image function.Scot Breitenfeld2013-02-1818-22/+396
| | | | Tested: (jam, gnu,intel compilers)
* [svn-r23290] Snapshot version 1.9 release 144HDF Tester2013-02-1713-26/+26
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* [svn-r23289] HDFFV-8311: Correct test dependencyAllen Byrne2013-02-151-170/+227
| | | | Tested: local linux
* [svn-r23288] Fix mismatched block statementAllen Byrne2013-02-151-1/+1
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* [svn-r23287] Correct file namesAllen Byrne2013-02-151-6/+6
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* [svn-r23286] HDFFV-8311: Correct test dependencyAllen Byrne2013-02-1518-249/+301
| | | | Tested: local linux
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