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* Add hdf5settings section for parallel compression status in CMake buildsJordan Henderson2018-07-312-17/+20
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* Switch to CheckSymbolExists in CMakeJordan Henderson2018-07-271-2/+2
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* Add configure check for MPI_Mprobe and MPI_Imrecv functionsJordan Henderson2018-07-268-22/+131
| | | | | | | | | | | | | | | Add line to libhdf5settings file for status of Parallel writes to filtered datasets status Surround Parallel Compression code in MPI_VERSION >= 3 checks Add disabled message for Parallel Compression built w/ MPI-2 Modify Parallel Compression tests to only run the parallel filtered read tests when parallel filtered writes are disabled Update big I/O code to handle being built with MPI-2 Add checks to CMakeLists.txt for MPI_Mprobe and MPI_Imrecv
* RELEASE.txt updates for HDFFV-10467 and HDFFV-10509Jordan Henderson2018-07-251-0/+38
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* Merge pull request #1150 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2018-07-242-34/+39
|\ | | | | | | | | | | | | | | * commit 'ac5871c39cd9cd26b4a26041da7f265d5bba64dd': Update HDF5 examples to correct version. Correct a few typos. Correct typo in comment in config/gnu-flags. Update bine/release to create batch scripts and build-unix-sh, and to put files in a subdirectory.
| * Update HDF5 examples to correct version.Larry Knox2018-07-241-2/+2
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| * Correct a few typos.Larry Knox2018-07-241-3/+3
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| * Correct typo in comment in config/gnu-flags.Larry Knox2018-07-241-1/+1
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| * Update bine/release to create batch scripts and build-unix-sh, and toLarry Knox2018-07-241-33/+38
|/ | | | put files in a subdirectory.
* Merge pull request #1148 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developBinh-Minh Ribler2018-07-241-4/+4
|\ | | | | | | | | * commit '9838a1a08f946417d6d361b8b2c86307288cc50d': Add missing '\' in the middle of the public headers list in Makefile.am.
| * Add missing '\' in the middle of the public headers list in Makefile.am.Larry Knox2018-07-241-4/+4
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* Merge pull request #1146 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp4:develop ↵Binh-Minh Ribler2018-07-2437-256/+730
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | to develop Code improvement New class for dataset access property list * commit '3c6a39858fef9e7207cd7c3e3057267ec380be0b': Fixed typos Entered entries for HDFFV-10150, HDFFV-10458, HDFFV-1047 Updated for C2Cppfunction_map.htm Added class DSetAccPropList Description: - Added class DSetAccPropList for the dataset access property list. - Added wrapper for H5Dget_access_plist to class DataSet // Gets the access property list of this dataset. DSetAccPropList getAccessPlist() const; Code improvement Description: Moved the new H5Object::getInfo member functions to H5Location and made them overloaded with the existing H5Location::getObjinfo. This way is cleaner than the previous approach. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * Fixed typosBinh-Minh Ribler2018-07-232-13/+13
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| * Entered entries for HDFFV-10150, HDFFV-10458, HDFFV-1047Binh-Minh Ribler2018-07-231-2/+61
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| * Updated for C2Cppfunction_map.htmBinh-Minh Ribler2018-07-231-1/+1
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| * Added class DSetAccPropListBinh-Minh Ribler2018-07-2230-39/+481
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Added class DSetAccPropList for the dataset access property list. - Added wrapper for H5Dget_access_plist to class DataSet // Gets the access property list of this dataset. DSetAccPropList getAccessPlist() const; - Added wrappers for H5Pset_chunk_cache and H5Pget_chunk_cache to class DSetAccPropList // Sets the raw data chunk cache parameters. void setChunkCache(size_t rdcc_nslots, size_t rdcc_nbytes, double rdcc_w0) // Retrieves the raw data chunk cache parameters. void getChunkCache(size_t &rdcc_nslots, size_t &rdcc_nbytes, double &rdcc_w0) - Added two more arguments to H5Location::createDataSet: const DSetAccPropList& dapl = DSetAccPropList::DEFAULT const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT - Added one more argument to H5Location::openDataSet: const DSetAccPropList& dapl = DSetAccPropList::DEFAULT Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * Merge branch 'develop' of ↵Binh-Minh Ribler2018-07-2113-63/+175
| |\ | |/ |/| | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp4 into develop
* | Merge pull request #1145 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2018-07-203-3/+110
|\ \ | | | | | | | | | | | | | | | | | | develop * commit 'ad317226eacbf5b0a770e458290236ba91861fdc': Fix for HDFFV-9277: update the ainfo message after removing an attribute.
| * | Fix for HDFFV-9277: update the ainfo message after removing an attribute.Vailin Choi2018-07-203-3/+110
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* | Merge pull request #1141 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp4:develop ↵Binh-Minh Ribler2018-07-197-35295/+24377
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop Fixed HDFFV-10472 and replaced the C2Cpp function mapping table with a more supported format. * commit 'dd0a040ec807912b80a9f1779fbf46c65d01cd57': Fixed EED-319 Description: - Fixed doc issue Added an html version for the C++ function mapping table and removed the single web page version. Updated cpp_doc_config to use the html file. - Added a couple more minor tests Fixed HDFFV-10472 Description: Added operator!= to DataType bool operator!=(const DataType& compared_type) Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* \ \ Merge pull request #1144 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developAllen Byrne2018-07-191-1/+9
|\ \ \ | | | | | | | | | | | | | | | | * commit '77fa93e07b2b860ca314b2c332ebd440544e3326': Add cmakehdf5 command line option to turn on shell script testing. Option is on by default but can be disabled with --disable-shell-testing.
| * | | Add cmakehdf5 command line option to turn on shell script testing.Larry Knox2018-07-191-1/+9
|/ / / | | | | | | | | | Option is on by default but can be disabled with --disable-shell-testing.
* | | Merge pull request #1143 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2018-07-185-23/+26
|\ \ \ | | | | | | | | | | | | | | | | * commit '3c6654921000a8659276f1fcb32dd0ada1353558': Apply Cygwin pathches from Marco Atzeri. Commit Joe Lee's typo corrections for src/H5MF.c.
| * \ \ Merge branch 'develop' of ↵Larry Knox2018-07-18141-1486/+6539
| |\ \ \ | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop
| * | | | Apply Cygwin pathches from Marco Atzeri.Larry Knox2018-07-185-23/+26
| | | | | | | | | | | | | | | | | | | | Commit Joe Lee's typo corrections for src/H5MF.c.
* | | | | Merge pull request #1142 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2018-07-184-36/+30
|\ \ \ \ \ | |_|/ / / |/| | | | | | | | | | | | | | | | | | | | | | | | * commit '3a8892a0d90edb6c21c91ede18bf6b3cb2895af0': Adjust error handling TRILABS-137 Convert tcheck_version script to cmake tests ifdef around std flag for cygwin
| * | | | Adjust error handlingAllen Byrne2018-07-181-2/+8
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| * | | | TRILABS-137 Convert tcheck_version script to cmake testsAllen Byrne2018-07-182-30/+17
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| * | | | ifdef around std flag for cygwinAllen Byrne2018-07-181-4/+5
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| | | * Code improvementBinh-Minh Ribler2018-07-2110-203/+176
| | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Moved the new H5Object::getInfo member functions to H5Location and made them overloaded with the existing H5Location::getObjinfo. This way is cleaner than the previous approach. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| | * Fixed EED-319Binh-Minh Ribler2018-07-185-35298/+24282
| | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Fixed doc issue Added an html version for the C++ function mapping table and removed the single web page version. Updated cpp_doc_config to use the html file. - Added a couple more minor tests
| | * Merge branch 'develop' of ↵Binh-Minh Ribler2018-07-170-0/+0
| | |\ | |_|/ |/| | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp4 into develop
* | | Merge pull request #1140 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp4:develop ↵Binh-Minh Ribler2018-07-178-10/+349
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop Fixed part of HDFFV-10458: wrappers for H5Oget_info2, H5Oget_info_by_name2, and H5Oget_info_by_idx2. * commit '3aa24435180d10aeca6493f7c1b277cfd5c73fad': Fixed HDFFV-10458 partially Description: Added wrappers for H5Oget_info_by_idx2. Fixed comments Fixed HDFFV-10458 partially Description: Added wrappers for H5Oget_info2 and H5Oget_info_by_name2.
| | | * Fixed HDFFV-10472Binh-Minh Ribler2018-07-173-0/+98
| | |/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | Description: Added operator!= to DataType bool operator!=(const DataType& compared_type) Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * | Fixed HDFFV-10458 partiallyBinh-Minh Ribler2018-07-174-9/+163
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Added wrappers for H5Oget_info_by_idx2. // Returns information about an HDF5 object, given its index. void getInfo(const char* grp_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) void getInfo(const H5std_string& grp_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * | Fixed commentsBinh-Minh Ribler2018-07-172-6/+14
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| * | Merge branch 'develop' of ↵Binh-Minh Ribler2018-07-177-41/+612
| |\ \ | |/ / |/| | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp4 into develop
* | | Merge pull request #1139 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp4:develop ↵Binh-Minh Ribler2018-07-173-4/+12
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop Fixed HDFFV-10476, HDFFV-10478, HDFFV-10480 * commit 'fe916ada370f33b48b3c39dbf9e3ff73df00fdb7': Removed white space Fixed HDFFV-10476, HDFFV-10478, HDFFV-10480 Description: Fixed potential out of bound read and NULL pointer dereferences. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* \ \ \ Merge pull request #1135 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developLarry Knox2018-07-177-41/+612
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | * commit '46986950ad2818a5235c821fa576e0f6470b39be': TRILAB-31 add note TRILAB-31 Working locally
| * \ \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-07-164-27/+43
| |\ \ \ \ | |/ / / / |/| | | | | | | | | | | | | | | | | | | | | | | | * commit '55666ace551369b3d72430c090ab9f1571e1be75': Combined macro lines as Dana commented Platforms tested: Linux/64 (jelly) (very minor) Fix evaluation of __has_attribute(no_sanitize_address) on older GCC versions Fixed division-by-zero issues Description: Fixed HDFFV-10481 and HDFFV-10477, division by 0. Fixed another occurrence beside what were reported. Also, changed a local variable to avoid an unnecessary cast. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * | | | TRILAB-31 add noteAllen Byrne2018-07-161-1/+7
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| * | | | TRILAB-31 Working locallyAllen Byrne2018-07-166-40/+605
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| | | * | Fixed HDFFV-10458 partiallyBinh-Minh Ribler2018-07-176-10/+187
| | |/ / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Added wrappers for H5Oget_info2 and H5Oget_info_by_name2. // Returns information about an HDF5 object. void getInfo(H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC) // Returns information about an HDF5 object, given its name. void getInfo(const char* name, H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) void getInfo(const H5std_string& name, H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| | * | Removed white spaceBinh-Minh Ribler2018-07-171-1/+2
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| | * | Fixed HDFFV-10476, HDFFV-10478, HDFFV-10480Binh-Minh Ribler2018-07-173-4/+11
| |/ / |/| | | | | | | | | | | | | | | | | | | | | | | Description: Fixed potential out of bound read and NULL pointer dereferences. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* | | Merge pull request #1134 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp4:develop ↵Binh-Minh Ribler2018-07-163-24/+36
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop Fixed HDFFV-10481 and HDFFV-10477 * commit '83ca39ba9a2d6852dd7754b533f7839e9d2a0107': Combined macro lines as Dana commented Platforms tested: Linux/64 (jelly) (very minor) Fixed division-by-zero issues Description: Fixed HDFFV-10481 and HDFFV-10477, division by 0. Fixed another occurrence beside what were reported. Also, changed a local variable to avoid an unnecessary cast. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * | | Combined macro lines as Dana commentedBinh-Minh Ribler2018-07-163-6/+3
| | | | | | | | | | | | | | | | | | | | Platforms tested: Linux/64 (jelly) (very minor)
| * | | Fixed division-by-zero issuesBinh-Minh Ribler2018-07-163-24/+39
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Fixed HDFFV-10481 and HDFFV-10477, division by 0. Fixed another occurrence beside what were reported. Also, changed a local variable to avoid an unnecessary cast. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* | | | Merge pull request #1136 in HDFFV/hdf5 from ↵Jerome Soumagne2018-07-161-3/+7
|\ \ \ \ | |_|/ / |/| | | | | | | | | | | | | | | | | | | ~JSOUMAGNE/hdf5_fork:topic_sanitize_gcc48_fix to develop * commit 'd5e7134df911808bba26ac6629e1fe8324916585': Fix evaluation of __has_attribute(no_sanitize_address) on older GCC versions
| * | | Fix evaluation of __has_attribute(no_sanitize_address) on older GCC versionsJerome Soumagne2018-07-161-3/+7
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