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* Remove HD from strto* calls (#3204)Dana Robinson2023-06-2926-89/+71
| | | | | | | | * HDstrtod * HDstrtol * HDstrtoll * HDstrtoul * HDstrtoull * HDstrtoumax
* Rename HDexit() and related to exit(), etc. (#3202)Dana Robinson2023-06-29102-490/+481
| | | | | * HDatexit * HDexit * HD_exit
* Remove some "Programmer" comments (#3209)Dana Robinson2023-06-2946-168/+70
| | | | | | | | | | These are meaningless noise. Removes the "Programmer" lines on comment start lines: /* Programmer: John Smith These complicate my sed script that will rip out the rest of the comments.
* Rename HDato*() to ato*() (#3201)Dana Robinson2023-06-2933-114/+102
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* Remove HD from protected POSIX calls (#3203)Dana Robinson2023-06-299-49/+28
| | | | | | | | | | | These calls are non-C99 but protected by ifdefs and have no Windows equivalents: * HDalarm * HDasprintf * HDclock_gettime * HDfcntl * HDgethostname * HDgetrusage * HDsymlink
* Remove checks for setsysinfo, which is unused (#3205)Dana Robinson2023-06-293-5/+1
| | | | * Autotools * CMake
* docs: remove redundancy in Data Transfer section of user guide (#3208)H. Joe Lee2023-06-291-1/+1
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* chore: fix grammar (#3207)H. Joe Lee2023-06-291-1/+1
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* Remove HD from memory allocate/free calls (#3195)Dana Robinson2023-06-28246-5912/+5892
| | | | | | * HDcalloc * HDfree * HDmalloc * HDrealloc
* Remove HD from HDposix_memalign() (#3196)Dana Robinson2023-06-283-12/+9
| | | | The posix_memalign call is only used in the direct VFD, which can only be built if posix_memalign() is available.
* Rename HDsystem() to system() (#3197)Dana Robinson2023-06-282-5/+2
| | | | system() is only used in the iopipe test and the things it calls (which are POSIX-y) are protected by an ifdef.
* Add note about HDF5_VOL_CONNECTOR to tools usage (#3159)mattjala2023-06-2828-0/+99
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* Rename HD(f)printf() to (f)printf() (#3194)Dana Robinson2023-06-28349-19025/+18690
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* Rename HDassert() to assert() (#3191)Dana Robinson2023-06-28398-15007/+14985
| | | | | * Change HDassert to assert * Fix bin/make_err
* Rename HDpipe() to pipe() (#3192)Dana Robinson2023-06-282-28/+25
| | | Pipe is POSIX but implemented in Microsoft's CRT
* Rename HDqsort() to qsort() (#3193)Dana Robinson2023-06-2814-45/+42
| | | | | | | | | * Rename HDqsort() to qsort() * Committing clang-format changes --------- Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fix assertion failure when attempting to use IOC VFD directly (#3187)jhendersonHDF2023-06-284-0/+66
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* Remove HD from fork/exec*/wait* (#3190)Dana Robinson2023-06-2810-84/+66
| | | | These are not C99 but are hidden behind ifdefs and are highly unlikely to ever have non-POSIX equivalents.
* Drop HD prefix & hbool_t from H5TS (#3180)Dana Robinson2023-06-282-51/+31
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* Remove HDva_(arg|copy|end|start) (#3184)Dana Robinson2023-06-2816-220/+205
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* Remove HD/hbool_t from high-level lib (#3183)Dana Robinson2023-06-2835-1459/+1455
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* Remove HD/hbool_t from fortran (#3182)Dana Robinson2023-06-2818-254/+254
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* Tidy the list of options in main.yml (#3181)Dana Robinson2023-06-271-4/+63
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* Fix the doxygen to gh pages and artifact creation (#3176)Allen Byrne2023-06-261-7/+2
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* Add gh-pages doxygen link (#3175)Allen Byrne2023-06-231-1/+5
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* Update Linux workflows (#3173)develop-readmeDana Robinson2023-06-221-12/+13
| | | | * Consolidate environment setup * Turn on ros3 VFD in CMake (Linux only)
* Fixed check for a VOL's async compatibility (#3164)Scot Breitenfeld2023-06-221-4/+6
| | | | | * cap flag fix in test * added async comp. output
* Add missing space in zip command (#3167)Allen Byrne2023-06-221-1/+1
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* Remove H5F_evict_tagged_metadata() (#3165)Dana Robinson2023-06-215-44/+16
| | | | The rest of the library just calls H5AC_evict_tagged_metadata() directly.
* Remove dead code behind #ifdef OLD_WAY (#3163)Dana Robinson2023-06-214-79/+9
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* speed-up building HDF5 (#3087)Scot Breitenfeld2023-06-202-2/+2
| | | Disables building the tests when building the netCDF, etc.
* Fix #1978 h5vers usage message. (#3162)Larry Knox2023-06-202-38/+29
| | | Update Platforms Tested in RELEASE.txt.
* Create Security Policy (#3152)Diogo Teles Sant'Anna2023-06-191-0/+13
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* Many fixes to various compiler warnings (#3124)Sean McBride2023-06-19144-757/+798
| | | | | | | | | | | * Fixed various -Wmissing-variable-declarations by adding static keyword * In a few cases, renamed the variable suffix from _g to _s. * Fixed some -Wmissing-variable-declarations by using different declaration macros * Fixed various -Wconditional-uninitialized warnings by just initializing variable to zero * Fixed various -Wcomma warnings * Fixed clang -Wstrict-prototypes warnings * Fixed various -Wunused-variable warnings * Updated some casts to fix the only 3 -Wcast-qual warnings * Fixed the only -Wsometimes-uninitialized warning
* Correct the zip usage (#3153)Allen Byrne2023-06-191-1/+1
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* Removes the HD prefix from java C99 calls (#3149)Dana Robinson2023-06-1920-549/+548
| | | POSIX calls (HDstrndup, etc.) are unchanged
* chore: fix grammar (#3150)H. Joe Lee2023-06-161-2/+2
| | | * chore: fix grammar
* Fix the snapshots workflow (#3148)Allen Byrne2023-06-163-6/+19
| | | | | | * Add upload url as artifact * Change doxygen path and comment log-url upload * zip doxygen files for upload * add workspace var
* Track s3 i/o when S3COMMS_DEBUG enabled (#3139)mattjala2023-06-161-0/+5
| | | * Track s3 i/o when S3COMMS_DEBUG enabled
* Define minimal permissions for new GitHub workflows (#3147)Diogo Teles Sant'Anna2023-06-164-0/+15
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* CMake: (feature) ROS3 and cmake config file. (#3146)Jan-Willem Blokland2023-06-162-0/+4
| | | | | - Added a cmake variable to the hdf5-config.cmake file which indicate if the library has been build with or without the read-only S3 functionality.
* Remove hbool_t/TRUE/FALSE from java (#3145)Dana Robinson2023-06-1614-88/+88
| | | Replaces with bool/true/false
* Remove HD prefix from network calls (#3142)Dana Robinson2023-06-165-69/+27
| | | HDsocket(), etc. Only affects the mirror VFD and its test code.
* Many clang -Wextra-semi-stmt fixes (#2537)Sean McBride2023-06-16241-2481/+2489
| | | | | * Adds semicolons to function-like macros * Adds a do..while(0) loop to some macros * Removes semicolons when inappropriate, especially H5E_TRY_BEGIN/END
* Fix path to libhdf5.settings in cmakehdf5 (#3140)H. Joe Lee2023-06-161-2/+2
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* Removed .lnt linter files (#3143)Dana Robinson2023-06-163-145/+0
| | | These were last usefully modified in 2004
* Add java options to build scripts (#3127)mattjala2023-06-152-1/+16
| | | | | | | | | | | | | | | | | | | * Add java options to build scripts Previously, cmakehdf5 turned on compiling of the java interface by default due to a value set in cacheinit.cmake. Now, consistent with how Fortran and CPP interfaces are handled, the script overwrites this default value to disable the libraries, fixing #2958. I also implemented the --enable-java/--disable java options for cmakehdf5, and -java for buildhdf5. Allen said these scripts should mention that compilers are to be specified in environment variables, but missing compilers causes errors at the CMake level, and CMake's error messages are already pretty informative (See the one in #2958 about JAVA_COMPILER).
* Revert long double checks (#3133)Dana Robinson2023-06-1510-25/+736
| | | | | | | * Revert "Remove long double conversion work-arounds (#3097)" This reverts commit 1e1dac1dac58fa18f6b7788346d1ba7d3315b0f9. * Update comments to reflect newer systems
* Fix function name in comment in ros3 VFD (#3131)H. Joe Lee2023-06-151-4/+1
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* Add Python for HDF-EOS zoo description (#3129)H. Joe Lee2023-06-151-2/+2
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