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* [svn-r29274] HDFFV-9698: fix subsetting issues with h5dumpAllen Byrne2016-03-0412-72/+480
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* [svn-r29272] Add code to deal with two source files for test_packet test.Allen Byrne2016-03-041-1/+11
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* [svn-r29270] Description:Binh-Minh Ribler2016-03-042-0/+25
| | | | Updated for "Improve Packet Table library" commit 29269.
* [svn-r29269] Purpose: Improve Packet Table libraryBinh-Minh Ribler2016-03-046-576/+1643
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: The Packet Table API used to have fixed-length and variable-length functions (i.e., H5PTcreate_fl and H5PTcreate_vl), but in 2006, the vlen functions were ifdef'ed out with VLPT_REMOVED, see HDFFV-442. The majority of this revision includes removing unused vlen stuff, adding various vlen tests, initial code cleanup, and first pass of commenting. Details: - Removed the VLPT_REMOVED ifdef, but keep H5PTis_varlen and the free function because they are useful or even needed, but the free function's name is changed to be more appropriate for both read/write buffers, i.e., H5PTfree_vlen_buff. - The new test file, test_packet_vlen.c, contains tests showing packet tables, containing various types of vlen data, can be created with the fixed-length function - Two accessor functions were added per HDFFV-8623/patch 003. /* Returns the ID of the dataset associated with the packet table */ hid_t H5PTget_dataset(hid_t table_id); /* Returns the ID of the datatype the packet table uses */ hid_t H5PTget_type(hid_t table_id); - Various cleanup: replacing 0/-1 with SUCCEED/FAIL and H5I_BADID with H5I_INVALID_HID, and removing many warnings. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r29266] Header generation default should be OFF.Allen Byrne2016-03-042-1/+3
| | | | For Trunk - cacheinit.cmake should enable it ON
* [svn-r29262] HDFFV-9241: Print fill value as "DEFAULT" instead of value 0Allen Byrne2016-03-033-21/+21
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* [svn-r29261] HDFFV-9241: Print fill value as "DEFAULT" instead of value 0Allen Byrne2016-03-0316-23/+33
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* [svn-r29259] HDFFV-9066: Improve h5dump usage statement for -O F, -ddl=F option.Allen Byrne2016-03-039-9/+9
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* [svn-r29257] HDFFV-9705: h5dump should not print filters or allocation time ↵Allen Byrne2016-03-039-205/+160
| | | | info for VDS files
* [svn-r29248] Fix test results for HDF_JAVAAllen Byrne2016-03-011-1/+3
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* [svn-r29247] Fix return typeAllen Byrne2016-03-012-5/+5
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* [svn-r29245] use HDONE_ERROR instead of HGOTO after done.Mohamad Chaarawi2016-03-011-2/+2
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* [svn-r29242] Set default or override valAllen Byrne2016-03-011-2/+4
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* [svn-r29239] Add HDF_JAVA AC_SUST line for settings fileAllen Byrne2016-03-011-0/+3
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* [svn-r29237] Missed a "then"Allen Byrne2016-03-011-1/+1
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* [svn-r29236] Check for shared libs only within enable-java blockAllen Byrne2016-03-011-116/+116
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* [svn-r29234] Fix H5 LIB OPTIONS macro for correct ARGN supportAllen Byrne2016-02-293-32/+7
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* [svn-r29233] Add ARGN option for soversion argumentsAllen Byrne2016-02-291-2/+9
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* [svn-r29232] add debug symbols library to installAllen Byrne2016-02-291-0/+1
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* [svn-r29231] Check if szip is enabled before attempting to run example with ↵Allen Byrne2016-02-291-1/+18
| | | | szip.
* [svn-r29229] Turn java OFF by default.Allen Byrne2016-02-291-1/+1
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* [svn-r29227] HDFFV-9552: merge in java code.Allen Byrne2016-02-2926-0/+2114
| | | | new files added.
* [svn-r29226] HDFFV-9552: merge in java code.Allen Byrne2016-02-29290-46/+74248
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* [svn-r29222] HDFFV-9570: Fix segfault when optional args are last option on ↵Allen Byrne2016-02-281-23/+28
| | | | | | command line. Tested: java_merge DT
* [svn-r29202] Fix for unknown message HDFFV-9697.Vailin Choi2016-02-2412-205/+435
| | | | Tested on jam, ostrich, platypus, kite, quail, osx1010test, emu, mayll, moohan.
* [svn-r29198] Remove if condition for test mask situationAllen Byrne2016-02-241-2/+2
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* [svn-r29190] Add checking for *.err file before trying to readAllen Byrne2016-02-233-12/+12
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* [svn-r29186] HDFFV-9654: add VDS options to h5dumpAllen Byrne2016-02-2330-139/+1257
| | | | includes new data files
* [svn-r29183] Fixed missing reopen test call in tfile from HDFFV-8740 fix.Dana Robinson2016-02-221-0/+1
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ fortran and C++
* [svn-r29182] Re-commit of HDFFV-8740 fix, which adds the ability to configureDana Robinson2016-02-2218-317/+1554
| | | | | | | | | | | | external dataset storage path behavior. This check-in fixes a bug in the original check-in where the external path stored in the file struct was not copied on reopen causing subsequent dataset operations to fail. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ fortran and C++ autotools parallel (MPICH 3.1.4) w/ fortran
* [svn-r29179] Revert of 29177 which breaks the autotools build.Dana Robinson2016-02-2216-257/+139
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial
* [svn-r29177] HDFFV-9654: add VDS options to h5dumpAllen Byrne2016-02-2216-139/+257
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* [svn-r29172] Fixed double word typo in #ifdef H5_FORTRAN_HAVE_C_SIZEOFScot Breitenfeld2016-02-191-1/+1
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* [svn-r29169] Changed #ifdef to use H5_FORTRAN_C_LONG_DOUBLE_IS_UNIQUE ↵Scot Breitenfeld2016-02-191-2/+2
| | | | | | instead of H5_FORTRAN_HAVE_C_LONG_DOUBLE Tested: jam (gnu)
* [svn-r29165] Various rododoc fixes. Effects comments only.Scot Breitenfeld2016-02-198-51/+22
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* [svn-r29163] changed robodoc specs to look for .F90 filesScot Breitenfeld2016-02-191-4/+1
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* [svn-r29162] added robodoc header informationScot Breitenfeld2016-02-191-11/+10
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* [svn-r29158] HDFFV-9190: Changed configure.ac to define ↵Mike McGreevy2016-02-191-0/+2
| | | | | | | | | H5_USE_18_API_DEFAULT when 'v18' is provided to --with-default-api-version. Tested: h5committest.new and kituo with --with-default-api-version=v18
* [svn-r29155] HDFFV-9652: Add fortran wrappers/test for collective metadata ↵Scot Breitenfeld2016-02-195-121/+330
| | | | | | functions Tested: h5committest.new
* [svn-r29150] fix for Jira issue 9670 - HDF5 segfaults on corrupted file.Mohamad Chaarawi2016-02-1812-144/+223
| | | | | | Change compare callback in Btree2 class to correctly account for errors. tested on bb-8.
* [svn-r29142] Updated the Intel files in config to use the new NO_SYMBOLS flagsDana Robinson2016-02-173-13/+44
| | | | | and modified the failsafe configure flags in ibm-aix to use the new scheme.
* [svn-r29139] Updated PGI compiler files to set NO_SYMBOLS_CFLAGS/FCFLAGS andDana Robinson2016-02-172-9/+6
| | | | | | | moved the -s (strip symbols) option from the production flags to the no symbols flags. Tested on: platypus w/ PGI 15.7 (C, C++, Fortran)
* [svn-r29134] Updated config/solaris to use the latest configure optionDana Robinson2016-02-171-21/+70
| | | | | | | and compiler flag scheme. Tested on: Solaris 11.1 (emu) w/ SunPro 5.12 CC/FC/CXX autotools serial
* [svn-r29132] Added new single-responsibility functions to h5test.c/h that canDana Robinson2016-02-172-0/+311
| | | | | | | | | | | replace functions like h5_clean_files() that also do things like reset the error handler and close fapls. Existing tests have not yet been updated to use these new functions. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial
* [svn-r29131] Updated the GNU g++ compiler config file to use the new debug/Dana Robinson2016-02-173-7/+35
| | | | | | | production, etc. system. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial - prod/debug w/ C++
* [svn-r29129] Added NO_SYMBOLS_CFLAGS, etc. to allow stripping symbols whenDana Robinson2016-02-179-26/+73
| | | | | | | | | | | | | | | | | | | | --disable-symbols is specified and to ensure that production mode (where symbol stripping is usually a part of the FLAGS) doesn't conflict with --enable-symbols. This will allow better (though still limited) debugging of production/optimized code. The PGI, XLC, Intel, and Solaris files were not modified and do not generate the symbol removal flag at this time. They'll be updated in future check-ins. In the meantime, production mode on those platforms still usually strips symbols. This check-in also updates the Cygwin-specific files to use the new autotools FLAGS and option scheme when uncommon (non-gnu, etc.) Fortran compilers are used. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (prod/debug w/ and w/o symbols) symbol presence/absence checked with objdump
* [svn-r29127] Moved the --enable-build-mode check in configure.ac to after theDana Robinson2016-02-161-54/+54
| | | | | | | | platform-specific build information so the debug and production flags are not clobbered. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (production & debug)
* [svn-r29119] Converted HDoff_t to off_t in test/external.c.Dana Robinson2016-02-151-116/+114
| | | | | | | Fixes Windows errors. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 64-bit Windows 10 w/ VS2015
* [svn-r29096] fix bug in internal dxpls generated exposed by production and ↵Mohamad Chaarawi2016-02-121-6/+8
| | | | parallel.
* [svn-r29094] Removed the v-1 B-tree package from the list of packages thatDana Robinson2016-02-122-3/+8
| | | | | | | | | | | | can be configured to generate extra debugging output in both the autotools and CMake. This can still be set by defining H5B_DEBUG manually or by using a custom string in configure. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial CMake serial
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