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* TRILAB-142 Change minimum CMake version to 3.12Allen Byrne2020-05-2087-337/+436
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* Fix always true issue because member is not dynamically allocatedAllen Byrne2020-05-201-7/+7
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* CMake cleanupAllen Byrne2020-05-202-2/+2
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* HDFFV-11032 fix JNI callAllen Byrne2020-05-201-2/+2
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* Replace the old H5F_DECODE_LENGTH() implementation with one thatDavid Young2020-05-201-1/+1
| | | | initializes the variable it's loading on every path.
* Corrected INTERFACE INTENT(IN) to INTENT(OUT) for buf_size ↵M. Scot Breitenfeld2020-05-202-1/+4
| | | | | | inh5fget_file_image_f. HDFFV-11029
* Start to document the function/parameter/variable attribute macros.David Young2020-05-201-0/+57
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* Filter all of the new _USED / _UNUSED type modifiers.David Young2020-05-201-0/+5
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* H5_HAVE_PARALLEL, _DEBUG_API, etc. Add attributes to some variables andDavid Young2020-05-2014-32/+63
| | | | parameters that are unused under some configurations.
* Use HD prefix.David Young2020-05-201-13/+13
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* Delete unhelpful comment per Jordan's question.David Young2020-05-201-3/+0
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* Make sure that H5TS_thread_id() is available as either a function or a macro inDavid Young2020-05-202-12/+5
| | | | | | | | | all configurations. Previously it was neither declared nor defined in --disable-threadsafety builds. The compiler's warning got lost in the noise---I first saw the issue because my -Werror branch stopped compiling cold---and the tests still linked and ran.
* Provide local copies of err(3)- and errx(3)-alike functionsDavid Young2020-05-201-7/+37
| | | | for Visual Studio compatibility.
* Provide C99/POSIX.1 format strings PRI[doux]{8,16,32,64,MAX,PTR} on systemsDavid Young2020-05-201-1/+39
| | | | that are missing <inttypes.h>.
* Take out the temporary performance tests.David Young2020-05-203-89/+0
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* Make calls through a function pointer. Use the same number of arguments,David Young2020-05-201-18/+26
| | | | always.
* Increase iterations, provide a baseline for no-op, simplify the overheadDavid Young2020-05-201-4/+10
| | | | case a bit.
* Temporarily add some code that measures the time to run the simplest possibleDavid Young2020-05-203-0/+75
| | | | | H5T__copy_all()-like routine 10 million times and then measures the version with FUNC_ENTER_STATIC/_LEAVE_NOAPI and a HGOTO_ERROR() statement.
* H5T_copy() constification plus Quincey's contributions.David Young2020-05-2015-194/+480
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* TRILAB-148 fix sanitizer and -fsanitize usageAllen Byrne2020-05-203-17/+17
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* Update sanitizer note.Allen Byrne2020-05-201-3/+12
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* Fix improper S3 signing key null check (HDFFV-11015).Jacob Smith2020-05-201-2/+2
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* HDFFV-11018 Add Fortran H5F_LIBVER_V*_F definitionsM. Scot Breitenfeld2020-05-208-65/+144
| | | | | | | | | | | | | | | | | | | Added ------ New Definitions: INTEGER :: H5F_LIBVER_ERROR_F INTEGER :: H5F_LIBVER_NBOUNDS_F INTEGER :: H5F_LIBVER_V18_F INTEGER :: H5F_LIBVER_V110_F INTEGER :: H5F_LIBVER_V112_F INTEGER :: H5F_LIBVER_V114_F New API: h5pget_libver_bounds_f(fapl_id, low, high, hdferr) Removed: call to C wrapper h5pset_libver_bounds_c in h5pset_libver_bounds_f
* HDFFV-11014, fix the h5repack issue that misses a few attributes during the ↵Muqun Yang2020-05-202-1/+18
| | | | repacking. The flag that checks the object reference attribute is not updated properly. The fix is trivial. Just need to move the flag update line into the inner loop. Tested at Jelly. Also update the release.txt.
* Oops, the test has to return success in the unimplemented case.David Young2020-05-201-3/+2
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* If H5_HAVE_THREADSAFE is not #defined, define nothing but a stub implementationDavid Young2020-05-201-0/+7
| | | | of H5TS_thread_id().
* src/H5Eint.c: #include H5TSprivate.h for H5TS_thread_id() definitions.David Young2020-05-202-2/+3
| | | | test/thread_id.c: move threads_failure() inside #ifdefs.
* Change thread IDs to uint64_t from unsigned long, per Quincey's suggestion.David Young2020-05-206-19/+20
| | | | | Fix a typo in the H5TS_thread_init() comment and reword some ID properties.
* Add thread_id.c to the MANIFEST and the CMakeLists.txt per Allen'sDavid Young2020-05-202-0/+2
| | | | request.
* Replace pthread_self_ulong() with H5TS_thread_id(). The POSIX ThreadsDavid Young2020-05-209-25/+288
| | | | | implementation ought to be portable to any system that has POSIX Threads. On Windows, I use the same API call as before.
* Add RELEASE.txt note for token refactoring changesJordan Henderson2020-05-201-0/+44
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* HDFFV-11012 - add release noteAllen Byrne2020-05-201-0/+7
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* HDFFV-11012 - add correct fortran include path propertiesAllen Byrne2020-05-203-6/+6
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* HDFFV-10996 add release noteAllen Byrne2020-05-201-0/+6
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* HDFFV-10996 - add java vol testsAllen Byrne2020-05-204-0/+386
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* Minor refactoring to the VFD info free call.Dana Robinson2020-05-201-10/+8
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* Updated the 'const memory free' changes based on PR feedback.Dana Robinson2020-05-209-45/+27
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* Added a free wrapper that lets us free constant pointers withoutDana Robinson2020-05-208-25/+62
| | | | | | | generating warnings. Also, brought the const-ness of the VOL connector info in line with the VFD info (not visible externally).
* VS2010 needs an underscoreAllen Byrne2020-05-201-0/+6
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* Cleaned up remaining warnings in high-level library.Dana Robinson2020-05-207-718/+988
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* Small fixes for tools and skip autotools tests for no filterAllen Byrne2020-05-204-29/+28
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* Reduce differences between my -Werror branch and `develop`:David Young2020-05-2026-276/+265
| | | | | | | | Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC shadowed declaration warnings about index(3). Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
* Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.David Young2020-05-209-83/+77
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Reduce gratuitous casts---e.g., (size_t)1. Use the right format string for a pointer. In the H5C sanity checks, change a "size increase" variable from ssize_t (too narrow) to int64_t (wide enough). Parenthesize every appearance of `storage` in the macro `H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an expression like &sc and it works properly. Disallow re-assignment of the `dset` parameter to H5D__chunk_init() because it helped assure me that it's safe to replace the repeating expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout. Replace lengthy expressions such as `&dset->shared->layout.storage.u.chunk` with `sc` throughout several functions in H5Dchunk.c ISTR that the compiler warned that `sc` was declared but unused in a couple of functions, and then I found that `sc` could be used in many places. Maybe the disused `sc` appeared because a bunch of code was copied and pasted, I don't know. Anyway, it's a lot tighter code now that I use `sc`. In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete() I actually expand `sc` and another temporary variable, `pline`, because they're used only in !defined(NDEBUG) code. This squashes unused-variable warnings in the defined(NDEBUG) configuration. Don't drop the `volatile` qualification with a cast in tools/src/h5import/h5import.c.
* testpar/t_2Gio.c: Fix a typo that I think was introduced by aDavid Young2020-05-2014-55/+89
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2]. fortran/src/H5Pf.c: move conditional compilation controlled by H5_NO_DEPRECATED_SYMBOLS outside of a function for readability. fortran/src/H5match_types.c: put a variable's declaration under the same conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its use. For now, skip compilation of some unused debug dump routines in the JNI. While I'm in the JNI, delete a set-but-unused variable. src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS so that it's not declared but unused or vice versa. test/cache_common.h: add an #include in to get some symbols we need to avoid implicit declaration warnings. test/dsets.c: use a more conventional conditional-compilation syntax. test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized variables before use. test/vfd.c: pass the expected type of `void **` to posix_memalign(3) instead of `int **`. testpar/t_bigio.c: explicitly compare with 0 instead of using ! when "equal to 0?" is the question not "is false?" Repair some indentation while I'm here. testpar/testpar.h: repair misaligned line-continuation backslashes in a macro that probably should be a function so that we don't have to fiddle with the line continuation to begin with. tools/src/h5repack/h5repack_main.c: fix some compiler fussing about enums. tools/test/perform/pio_engine.c: the compiler fusses if you cast a function call returning double directly to off_t. It's ok if you cast a variable that's a double to off_t, however. Write and use a new function, sqrto(), to avoid the cast warnings.
* fix bad function cast warningkmu2020-05-201-2/+2
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* initialization discards const warningkmu2020-05-201-7/+7
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* fix unused function warningkmu2020-05-202-40/+69
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* HDFFV-11011 - merge include listAllen Byrne2020-05-201-2/+1
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* HDFFV-11011 correct issues with target file extensionAllen Byrne2020-05-2020-248/+166
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* Introduce new H5VL _by_value routinesJordan Henderson2020-05-2017-91/+545
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