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* [svn-r15549] Description:Quincey Koziol2008-08-2828-108/+2620
| | | | | | | | | | | | | | | | | | | | | | | | | | | Initial checkin of extensible array data structure prototype code and regression tests. Initial definitions for revised FUNC_ENTER/LEAVE and error reporting macros, which are being vetted in the extensible array code. Minor warning and formatting cleanups in other sections of code. Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15547] fix typosPedro Vicente Nunes2008-08-272-2/+2
| | | | tested: linux
* [svn-r15546] Purpose: Add new Fortran source fileScott Wegner2008-08-272-25/+27
| | | | | | | | Description: There is a new Fortran file, H5_DBLE_InterfaceInclude.f90, which needs to be added to Windows. There is also another version, *InterfaceExclude.f90, which is for users that build with the -r8 flag. However, we don't include this on Windows, as it is not currently a common option. If we get requests from users, we can add documentation for using this alternative interface. Tested: VS2005 w/ IVF9.1 on WinXP
* [svn-r15543] Description:Scot Breitenfeld2008-08-271-0/+1
| | | | | Put the DOUBLE PRECISION interfaces in a separate module and added a USE statement for the module. The interfaces are included/excluded depending on the state of FORTRAN_DEFAULT_REALisDBLE_F which detects if the default REAL is DOUBLE PRECISION. This allows the library to be compiled with -r8 Fortran flag without the user needing to change the source code.
* [svn-r15541] Description:Scot Breitenfeld2008-08-268-1990/+2115
| | | | | Put the DOUBLE PRECISION interfaces in a separate module. The interfaces are included/excluded depending on the state of FORTRAN_DEFAULT_REALisDBLE_F which detects if the default REAL is DOUBLE PRECISION. This allows the library to be compiled with -r8 Fortran flag without the user needing to change the source code.
* [svn-r15540] Description:Scot Breitenfeld2008-08-262-33/+40
| | | | Enable building shared library for fortran by adding the flag -fPIC to the compile flags for versions of Intel Fortran compiler >=9
* [svn-r15539] Description:Scot Breitenfeld2008-08-261-1/+1
| | | | Fixed spacing issue for fortran summary line.
* [svn-r15537] add a mention to h5repack new featurePedro Vicente Nunes2008-08-261-0/+1
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* [svn-r15535] Description:Scot Breitenfeld2008-08-261-0/+2
| | | | | | | | | Added files: ./fortran/src/H5_DBLE_InterfaceInclude.f90 ./fortran/src/H5_DBLE_InterfaceExclude.f90 Contains the DOUBLE PRECSION interfaces depending on the state of FORTRAN_DEFAULT_REALisDBLE_F.
* [svn-r15534] Description:Scot Breitenfeld2008-08-262-30/+155
| | | | Added a test program to determine if -r8 or the default of REAL is DOUBLE PRECISION. Sets the variable FORTRAN_DEFAULT_REALisDBLE_F to true if default REAL is DOUBLE PRECISION.
* [svn-r15527] turn off a debug print flagPedro Vicente Nunes2008-08-251-1/+1
| | | | tested: windows, linux
* [svn-r15526] userblock optionsPedro Vicente Nunes2008-08-253-8/+9
| | | | | | only write the user block of a pre-existing file with user block in case there is no input user block file tested: windows, linux
* [svn-r15524] Purpose: Add new h5repack test to WindowsScott Wegner2008-08-251-0/+4
| | | | | | | | Description: There was one new h5repack test added recently. This commit also adds it to the Windows test script Tested: VS2005 on WinXP
* [svn-r15522] Purpose: Fix Windows link dependencies in new app_ref DLL projectScott Wegner2008-08-251-2/+2
| | | | | | | | Description: The app_refdll project was set to link with static version of hdf5 and libtest projects, which were causing the build to fail, only in Visual Studio .NET 2003, and was previously overlooked. This corrects those errors. Tested: VS.NET on WinXP
* [svn-r15521] #1184Pedro Vicente Nunes2008-08-226-16/+310
| | | | | | | | | | Add a userblock to an HDF5 file during the repack. The user gives give a filename and userblock size as command line parameters to h5repack and the contents of that file are stored in the userblock for the HDF5 file created by h5repack. New flags to handle this -u and -b Tested : windows, linux
* [svn-r15515] Fix faulty error checking in call to H5I_remove().Neil Fortner2008-08-212-1/+3
| | | | | | Add prototype to the top of app_ref.c to suppress warning. Tested: kagiso
* [svn-r15512] Description:Quincey Koziol2008-08-214-5/+5
| | | | | | | | Fix a few typos introduced in r15510. Tested on: Mac OS X/32 10.5.4 (amazon) More testing upcoming
* [svn-r15510] Description:Quincey Koziol2008-08-2197-1535/+1544
| | | | | | | | Clean up warnings & formatting Tested on: Mac OS X/32 10.5.4 (amazon) More tests forthcoming
* [svn-r15509] bug fixPedro Vicente Nunes2008-08-211-270/+282
| | | | | | when comparing attributes, a type ID was not properly closed solution: close the Id on the iteration and continue instead of goto out of the cycle
* [svn-r15505] Change the names of some macros in app_ref.c to prevent ↵Neil Fortner2008-08-211-6/+6
| | | | | | warnings on Windows. Tested: kagiso
* [svn-r15504] Purpose: Update MANIFESTScott Wegner2008-08-211-0/+4
| | | | | | | | Description: Add new Windows project files to MANIFEST Tested: none
* [svn-r15503] Purpose: Add new app_ref test to Windows projectsScott Wegner2008-08-218-2/+1093
| | | | | | | | Description: A new test program, app_ref, was added to the source and configure script. We need to make special Windows project files for static and DLL versions of the test, and also VS2005 and VS.NET versions. Finally, include the new test in our script Tested: VS2005 on WinXP
* [svn-r15502] Description:Quincey Koziol2008-08-213-31/+32
| | | | | | | | Clean up warnings. Tested on: Mac OS X/32 10.5.4 (amazon) Too minor to require h5committest
* [svn-r15491] Description:Quincey Koziol2008-08-191-0/+2
| | | | Update release notes for last bug fix.
* [svn-r15488] Description:Quincey Koziol2008-08-192-1/+15
| | | | | | | | | Fix bug where library could core dump when an invalid location ID was passed to H5Giterate() (and add test for this case). Tested on: Mac OS X/32 10.5.4 (amazon) Too minor to require h5committest
* [svn-r15485] Purpose: Allow library to shut down properly when objects have ↵Neil Fortner2008-08-1967-535/+785
| | | | | | | | | | | | | | | | reference count > 1. Description: Added a new field 'app_count' to H5I_id_info_t struct, to track the reference count on an id due to the application. the old 'count' field tracks the total. Generally any id visible to the application gets placed in app_count. Added app_ref boolean parameter to H5I_inc_ref, H5I_dec_ref, H5I_register, H5I_clear_type, and a few other functions, to specify whether the operation(s) being performed on the id(s) are due to the application (TRUE) or not (FALSE). Test added for this case. Tested: kagiso, smirom, linew (h5committest)
* [svn-r15477] Removed vestigal code from H5SM_delete_from_index() which would ↵Neil Fortner2008-08-171-11/+0
| | | | | | | | | have dereferenced an uninitialized pointer if it had been reachable. Closes bz #1280. Tested: kagiso, smirom, linew (h5committest)
* [svn-r15476] Snapshot version 1.9 release 14HDF Tester2008-08-178-20/+20
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* [svn-r15472] Description:Quincey Koziol2008-08-141-11/+11
| | | | | | | Correct H5Dopen to H5Dopen2 in error printf Tested on: None, just eyeballed, very trivial.
* [svn-r15468] Removed prototype for deleted function H5F_has_mountNeil Fortner2008-08-121-1/+0
| | | | Tested: kagiso
* [svn-r15467] remove h52jpegPedro Vicente Nunes2008-08-121-3/+2
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* [svn-r15466] remove h52jpegPedro Vicente Nunes2008-08-121-1/+0
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* [svn-r15465] remove h52jpegPedro Vicente Nunes2008-08-121-10/+0
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* [svn-r15464] delete h52jpegPedro Vicente Nunes2008-08-129-223812/+0
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* [svn-r15462] Description:Quincey Koziol2008-08-1211-19/+21
| | | | | | | | Correct compiler warnings from Visual Studio. Tested on: Mac OS X/32 10.5.4 (amazon) w/FORTRAN & C++ (Too minor to require full h5committest)
* [svn-r15458] Purpose: Modify the library to take the proper action when ↵inactive/jpeg_converterNeil Fortner2008-08-1190-103/+234
| | | | | | | | | | | | | | files with incorrect datatype versions are encountered. Description: The library now recognizes some problems with datatype versions in H5O_decode_helper(), and, if not performing strict format checks, automatically corrects them. Framework added for other message decode routines to automatically correct file errors. Datatype version information added to h5debug. Tested: kagiso, smirom, linew (h5committest)
* [svn-r15457] Description:Binh-Minh Ribler2008-08-111-1/+29
| | | | | | | Added notes about: - bugzilla 1068: revising class hierarchy to move Attribute out. - replacing IdComponent::dereference with new H5Object member functions and constructors in various other classes.
* [svn-r15455] Snapshot version 1.9 release 13HDF Tester2008-08-108-21/+21
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* [svn-r15451] Purpose: Fix various problems that were occurring when using ↵Neil Fortner2008-08-079-138/+426
| | | | | | | | | | | | | | | | mounted files. Description: Moved mount table from top file structure to shared file structure. Moved parent out of mount table and back into top file structure. Mounted files can now be accessed from any handle of the parent file. Changes to how files are closed. Stricter cycle checking on mounted files. Removed unused function H5F_has_mount(). Tested: committest in 1.8 branch. Committing now due to the urgency of the fix. No changes here are specific to the trunk, but I will keep an eye on the daily tests.
* [svn-r15446] bug fixPedro Vicente Nunes2008-08-072-4/+16
| | | | | | | http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=788 don't print array indices for regions tested: windows, linux
* [svn-r15445] added some commentsPedro Vicente Nunes2008-08-072-1/+15
| | | | tested: windows, linux
* [svn-r15440] Purpose: Correct a few typos from my previous editScott Wegner2008-08-061-9/+10
| | | | | | | | | | Description: -- Remove a couple lines of debugging output -- Make sure H5_PACKAGE_NAME outputs 'HDF5' rather than 'hdf5' -- Take into account version strings with a postfix. This isn't currently used in HDF5 1.9 branch, but is in HDF5 1.8. Tested: kagiso
* [svn-r15439] Add the following patch Peter Cao2008-08-061-1/+1
| | | | | | | | | | | | | | | | === The following patch to h5copy.c on or near line 173 makes the tool substantially more useful... *flag = (*flag) | fla; Because the command-line option parsing permits multiple '-f' arguments, this will have the effect of or'ing the flags together so one can do someting like.... ~/tmp/hdf5-1.8.1/tools/h5copy/h5copy -i multi_ucd3d.h5 -s block5 -o gorfo -d foo -f shallow -f soft Mark C. Miller, Lawrence Livermore National Laboratory email: mailto:miller86@llnl.gov ===
* [svn-r15438] Purpose: Bring the Windows H5pubconf.h up-to-dateScott Wegner2008-08-063-155/+665
| | | | | | | | | | | | | | Description: This commit is a major update to the Windows-maintained H5pubconf.h file. This file is statically-distributed because Windows cannot generate it dynamically as other platforms do. Previously, our Windows version contained a minimal subset of the macro definitions required. To update, I've gone through each macro (based on kagiso's output), and tested for the correct value on Windows. This allows us to better target code based on feature flags. It should also be easier to update in the future as changes are made to the configure script. This commit also contains one small bug fix in h5ls.c. Some Windows-specific code was missing a local variable definition. The bug went unnoticed because Windows didn't define the feature flag correctly. I've also made changes to the h5vers script. Whenever the version string is incremented (automatically by h5test after a snapshot), the strings in H5pubconf.h will also be updated. Tested: VS2005 on WinXP (32- and 64-bit) VS.NET on WinXP 32-bit h5vers tested under Cygwin
* [svn-r15432] bug fixPedro Vicente Nunes2008-08-051-6/+8
| | | | | | the compression ratio was being printed for cases where a layout was requested and not a filter tested: windows, linux
* [svn-r15431] added the h5diff "contents" mode to the h5diff calls in the ↵Pedro Vicente Nunes2008-08-051-0/+3
| | | | | | h5repack test tested: windows, linux
* [svn-r15430] Purpose: Update Windows test script for new h5diff option: -cScott Wegner2008-08-042-1/+7
| | | | | | | | Description: A new parameter was added to h5diff recently. We add a new test to the h5diff script, and change the syntax in which h5diff is called from the h5repack test script Tested: VS2005 on WinXP
* [svn-r15429] new test for h5diffPedro Vicente Nunes2008-08-041-0/+1
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* [svn-r15428] http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=1170Pedro Vicente Nunes2008-08-0421-116/+361
| | | | | | | | | | Summary: when using h5diff to compare the results of h5repack (or other tools that copy one HDF5 file to another), a new option is needed to allow h5diff to make an "absolute" comparison of the 2 files. This is the "contents" mode explained in the usage below. If this mode is present, objects in both files must match (must be exactly the same). If this does not happen, the tool returns an error code of 1 (instead of the success code of 0) Changes to the h5repack test script: the call to h5diff was changed to include -c (maintaining the previous -q). tested: windows, linux, solaris
* [svn-r15425] Snapshot version 1.9 release 12HDF Tester2008-08-037-18/+18
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