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* Updated based on reviews and refactored test codeBinh-Minh Ribler2019-09-014-779/+815
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* Code cleanup and refactorBinh-Minh Ribler2019-08-292-72/+47
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* Re-ordered items w.r.t. date.Binh-Minh Ribler2019-08-281-49/+50
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* Fixed typoBinh-Minh Ribler2019-08-281-1/+1
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* Added notes about HDFFV-10677 and HDFFV-10661Binh-Minh Ribler2019-08-281-0/+21
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* Merge branch 'develop' of ↵Binh-Minh Ribler2019-08-2813-428/+1004
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5-bmr into develop
| * Merge pull request #1896 in HDFFV/hdf5 from ↵Dana Robinson2019-08-2712-426/+1002
| |\ | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:H5Pset_fapl_mpi to develop * commit '937616872cf228f838fd1eb2853ce6110f3da10b': Minor tweaks to new H5P MPI code based on code review feedback. Fixed a bug in the cache image code that was introduced by the HD changes. Added H5Pset/get_mpi_params calls and unified them with the MPI-I/O VFD info in H5FDmpio.c.
| | * Minor tweaks to new H5P MPI code based on code review feedback.Dana Robinson2019-08-272-23/+17
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| | * Merge branch 'develop_minor_pr' into H5Pset_fapl_mpiDana Robinson2019-08-272-2/+2
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| | | * Fixed a bug in the cache image code that was introduced by the HDDana Robinson2019-08-271-1/+1
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| * | Merge pull request #1903 in HDFFV/hdf5 from ↵Dana Robinson2019-08-271-1/+1
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_minor_pr to develop * commit '9a4f86997ad160bcc8a3f9eefdbd92d4a63e14c6': Fixed typo from HD changes
| | * | Fixed typo from HD changesDana Robinson2019-08-271-1/+1
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| * | Merge pull request #1902 in HDFFV/hdf5 from ↵Dana Robinson2019-08-271-1/+1
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:fcntl_lock_bug to develop * commit 'd42de626b604b75963fd593a145fd9c9b9e20602': Fixed a bug where we incorrectly pass a lock struct to fcntl for file locking instead of a pointer.
| | * | Fixed a bug where we incorrectly pass a lock struct to fcntlDana Robinson2019-08-271-1/+1
| | | | | | | | | | | | | | | | for file locking instead of a pointer.
| | | * Merge branch 'develop' into H5Pset_fapl_mpiDana Robinson2019-08-2734-1763/+1757
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| | | * Merge branch 'develop' into H5Pset_fapl_mpiDana Robinson2019-08-277-6/+24
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| | | * Added H5Pset/get_mpi_params calls and unified them with the MPI-I/ODana Robinson2019-08-2611-425/+1007
| | | | | | | | | | | | | | | | VFD info in H5FDmpio.c.
* | | | HDFFV-10677 and HDFFV-10661Binh-Minh Ribler2019-08-2813-67/+2649
|/ / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Added functions to query chunk information: H5Dget_num_chunks(dset_id, fspace_id, *nchunks) Gets the number of written chunks that intersect with the given dataspace. However, in this version, the intersection is not yet completed. Thus, the number of all written chunks will be returned. H5Dget_chunk_info_by_coord(dset_id, *offset, *filter_mask, *addr, *size) Given a chunk's logical coordinates, returns the chunk's filter, address, and size. H5Dget_chunk_info(dset_id, fspace_id, index, *offset, *filter_mask, *addr, *size) Given a chunk's index, returns the chunk's logical coordinates, filter, address, and size. The chunk belongs to a set of chunks that have nonempty intersection with the specified dataspace. However, in this version, the intersection is not yet completed, and the index is of all the written chunks. These functions comply with VOL. - Fixed some oversights found in the library for the tests in chunk_info.c to work correctly. The returned value from a callback function was not checked in H5EA_iterate(), H5FA_iterate(), and H5D__none_idx_iterate(). This oversight caused a callback function to continue iterating even though it's supposed to stop. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
* | | Merge pull request #1899 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-08-271-8/+8
|\ \ \ | | | | | | | | | | | | | | | | * commit '392340062b7c130a02368aee79bc34ba9868038a': Add HD prefix
| * | | Add HD prefixAllen Byrne2019-08-271-8/+8
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| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-08-277-6/+24
| |\ \ \ | |/ / / |/| | | | | | | | | | | | | | | * commit 'ddf04a9a727252f40197c48da541212dff646046': Add a 'closing' flag on the shared file struct, and switch several of the "internal" data structures to use it. Fixed the assertion failure for HDFFV-10873.
* | | | Merge pull request #1893 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-08-2736-1783/+1777
|\ \ \ \ | |/ / / | | / / | |/ / |/| | * commit 'ba974c031deb709b6d4241da95485b48d747afdd': OESS-29 Update HD prefix mostly
| * | OESS-29 Update HD prefix mostlyAllen Byrne2019-08-2436-1783/+1777
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* | Merge pull request #1897 in HDFFV/hdf5 from ~KOZIOL/hdf5:refactor_file to ↵Quincey Koziol2019-08-265-5/+9
|\ \ | | | | | | | | | | | | | | | | | | develop * commit '3090ac81506094ee510ae89c31749b5c1632aa34': Add a 'closing' flag on the shared file struct, and switch several of the "internal" data structures to use it.
| * | Add a 'closing' flag on the shared file struct, and switch several of theQuincey Koziol2019-08-265-5/+9
| |/ | | | | | | "internal" data structures to use it.
* | Merge pull request #1892 in HDFFV/hdf5 from ↵Vailin Choi2019-08-262-1/+15
|\ \ | |/ |/| | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-10873-assertion-v-oh--nmesgs-failed to develop * commit '021919206df7764f951037ae76ccae006b2eea99': Fixed the assertion failure for HDFFV-10873.
| * Fixed the assertion failure for HDFFV-10873.Vailin Choi2019-08-232-1/+15
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* Merge pull request #1889 in HDFFV/hdf5 from ~KOZIOL/hdf5:shared_file_ptr to ↵Quincey Koziol2019-08-2328-403/+596
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit 'f42c7cc0d85cc5b232afd621711fdbd64f6e19d9': Fix major error codes Switch shared file struct name from 'H5F_file_t' to 'H5F_shared_t', to match naming convention for shared structs in rest of library data structures. Small tidy up. Progress toward movig H5MF* API to use shared file pointers instead of top file pointers. Progress on moving the H5MF* interface to using shared file pointers instead of top file pointers. Begin converting the H5MF interface to use shared file pointers instead of top file pointers. Progress toward moving the dataset routines to using the 'shared' file pointer instead of the 'top' file pointer. Begin converting dataset code to use shared file pointer instead of top file pointer. Finish converting H5PB_* routines to use shared file pointer, instead of top file pointer. First pass of converting H5PB_* routines to use shared file pointers. Rest of changes for 'top' file pointer to 'shared' file pointer for H5F__accum routines. Partial H5F__accum_* routines.
| * Fix major error codesQuincey Koziol2019-08-221-4/+4
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| * Switch shared file struct name from 'H5F_file_t' to 'H5F_shared_t', to matchQuincey Koziol2019-08-2220-111/+111
| | | | | | | | naming convention for shared structs in rest of library data structures.
| * Merge branch 'develop' into shared_file_ptrQuincey Koziol2019-08-21117-20690/+20211
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* | Merge pull request #1886 in HDFFV/hdf5 from ↵Dana Robinson2019-08-211-57/+23
|\ \ | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_minor_pr to develop * commit 'e747237a9c03e551eef017cf4a0de5d67ca4fd71': Removed unnecessary H5S_FRIEND and dead code.
| * | Removed unnecessary H5S_FRIEND and dead code.Dana Robinson2019-08-201-57/+23
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* | Merge pull request #1884 in HDFFV/hdf5 from ↵Dana Robinson2019-08-2013-805/+172
|\ \ | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:new_vfd_build_cleanup to develop * commit '3ee329cb463538cceffef722101fb28e37fbddcb': Untangle #ifdef mess in ROS3 code.
| * \ Merge branch 'develop' into new_vfd_build_cleanupDana Robinson2019-08-200-0/+0
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* | | Merge pull request #1883 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2019-08-191-44/+44
|\ \ \ | | | | | | | | | | | | | | | | * commit '92f103cfd4b19b61a0ddf6e62e1692d2b3eeb4d9': Add H5_DLL to all s3comms function prototypes to stop Windows unresolved external symbols errors. HDFFV-10889.
| * | | Add H5_DLL to all s3comms function prototypes to stop Windows unresolvedLarry Knox2019-08-191-44/+44
| | | | | | | | | | | | | | | | external symbols errors. HDFFV-10889.
| | * | Untangle #ifdef mess in ROS3 code.Dana Robinson2019-08-2013-787/+154
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* | | Merge pull request #1882 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-08-197-6/+164
|\ \ \ | |/ / |/| | | | | | | | * commit '935f27c1b803faf981131ff936619aecd9f76e38': HDFFV-10887 Implement requested functions
| * | HDFFV-10887 Implement requested functionsAllen Byrne2019-08-197-6/+164
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* | Merge pull request #1880 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-08-1999-19850/+19880
|\ \ | | | | | | | | | | | | | | | | | | | | | * commit '9081fb266cc15198e0c75a77f23f2b252c6ee79f': Add missing HD prefix This test cannot use HD prefix macro with printf of fprintf Update HD prefix and reconcile hl/cpp test Add HD prefix to tests
| * | Add missing HD prefixAllen Byrne2019-08-181-121/+121
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| * | This test cannot use HD prefix macro with printf of fprintfAllen Byrne2019-08-171-2/+2
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-08-172-2/+21
| |\ \ | |/ / |/| | | | | | | | | | | * commit 'dcf084aff42d3abafaa82b356493a2d1585afb85': Changes based on PR feedback. Fix for HDFFV-10813 H5Fset_metadata_read_retry_info() test fails on jelly with PGI/19.
| * | Update HD prefix and reconcile hl/cpp testAllen Byrne2019-08-1614-1216/+1224
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| * | Add HD prefix to testsAllen Byrne2019-08-1589-18632/+18654
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| | * Small tidy up.Quincey Koziol2019-08-211-10/+8
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| | * Progress toward movig H5MF* API to use shared file pointers instead of topQuincey Koziol2019-08-211-37/+34
| | | | | | | | | | | | file pointers.
| | * Progress on moving the H5MF* interface to using shared file pointers instead ofQuincey Koziol2019-08-211-39/+38
| | | | | | | | | | | | top file pointers.
| | * Begin converting the H5MF interface to use shared file pointers insteadQuincey Koziol2019-08-216-83/+82
| | | | | | | | | | | | of top file pointers.
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