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* VFD SWMR: Normalization with develop and cleanup (#1559)Dana Robinson2022-03-3146-5373/+1538
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Brought over plugin and test script changes * Removes remaining register keywords (#1481) * Fixed warnings in the aux process code * Minor fixes from develop * Minor changes from develop, fixed format warnings * Formatted source * Added HD prefix to timespec_get * Cleanup in new files * Removes the MANIFEST file and unused release files (#1497) * Removes the MANIFEST file and unused release files * Updated tar command * checkposix corrections * More checkposix fixes * Ripped out unused instrumentation functionality * Brought over cache tagging changes from develop * Changes to tagged metadata expulsion iteration * Fixed typo * Brought over H5O__free() changes from develop * Brings (unused) parallel page buffer test in line with develop * Moved the functionality in supervise.subr to test_vfd_swmr.sh * Tools VFD parameter updates * Committing clang-format changes * H5F VFD SWMR refactoring * Committing clang-format changes * Misc changes * Acceptance test cleanup * HD prefix * H5_get_option instead of getopt * Some bool fixes * Changes to VFD SWMR acceptance tests * Minor cleanup * Use AC_MSG_RESULT/AC_MSG_ERROR/AC_MSG_WARN instead of echo (#1532) * Merges from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* VFD SWMR: Normalization with develop (#1506)Dana Robinson2022-03-23126-9566/+3109
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Brought over plugin and test script changes * Removes remaining register keywords (#1481) * Fixed warnings in the aux process code * Minor fixes from develop * Minor changes from develop, fixed format warnings * Formatted source * Added HD prefix to timespec_get * Cleanup in new files * Removes the MANIFEST file and unused release files (#1497) * Removes the MANIFEST file and unused release files * Updated tar command * checkposix corrections * More checkposix fixes * Ripped out unused instrumentation functionality * Brought over cache tagging changes from develop * Changes to tagged metadata expulsion iteration * Fixed typo * Brought over H5O__free() changes from develop * Brings (unused) parallel page buffer test in line with develop * Moved the functionality in supervise.subr to test_vfd_swmr.sh * Tools VFD parameter updates * Committing clang-format changes * H5F VFD SWMR refactoring * Committing clang-format changes * Misc changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* VFD SWMR: normalization with develop (#1472)Dana Robinson2022-03-06774-14074/+30344
| | | Much normalization with develop. Still needs tools changes wrt VFD plugins.
* VFD SWMR: Aux process changes (#1451)Dana Robinson2022-02-1850-46/+1670
| | | | | | | | | | | * Removed the aux process submodule * Directly added aux process files after submodule delete * Updated Akadio copyright on appropriate files * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Merge pull request #1445 from derobins/vfd_swmr/licenseDana Robinson2022-02-1746-78/+227
|\ | | | | Updated VFD SWMR's Akadio license
| * Updated the submodule to point to the correct commit so the tests passDana Robinson2022-02-171-0/+0
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| * Updated VFD SWMR's Akadio licenseDana Robinson2022-02-1745-78/+227
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* Merge pull request #1333 from raylu-hdf/raylu_aux_processraylu-hdf2022-01-318-11/+215
|\ | | | | Changes Related to the Auxiliary Process
| * Enable submodule checkout for vfd_swmr.Ray Lu2022-01-281-0/+2
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| * Committing clang-format changesgithub-actions2022-01-041-11/+12
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| * Rearragned how the auxiliary process is tested: let the test script launch ↵Ray Lu2022-01-047-32/+90
| | | | | | | | it if the --enable-aux-process option is enabled during configure.
| * Added the option to run the auxiliary process ('-A'). For now, it's enabled ↵Ray Lu2021-12-171-3/+146
| | | | | | | | by hand for testing.
* | Updated utils/vfd_swmr submodule commit to point to HEAD (#1385)Dana Robinson2022-01-241-0/+0
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* | Merge pull request #1346 from vchoi-hdfgroup/obj_reg_ref_feature_vfd_swmrvchoi-hdfgroup2022-01-132-101/+500
|\ \ | | | | | | Obj reg ref feature vfd swmr
| * | Committing clang-format changesgithub-actions2022-01-101-157/+156
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| * | Modifications to test/vfd_swmr_dsetops_writer.c for testing references.vchoi2022-01-102-79/+479
| | | | | | | | | | | | Add test for references to test/testvfdswmr.sh.in.
| * | Merge pull request #51 from vchoi-hdfgroup/feature/vfd_swmrvchoi-hdfgroup2022-01-076-12/+360
| |\ \ | | | | | | | | Feature/vfd swmr
| | * \ Merge pull request #50 from HDFGroup/feature/vfd_swmrvchoi-hdfgroup2022-01-076-12/+360
| | |\ \ | |_|/ / |/| | | Feature/vfd swmr
* | | | Merge pull request #1322 from vchoi-hdfgroup/group_tests_issuesvchoi-hdfgroup2022-01-056-12/+360
|\ \ \ \ | |_|_|/ |/| | | Group tests issues
| * | | Committing clang-format changesgithub-actions2022-01-041-9/+8
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| * | | Merge branch 'group_tests_issues' of https://github.com/vchoi-hdfgroup/hdf5 ↵vchoi2022-01-042-7/+7
| |\ \ \ | | | | | | | | | | | | | | | into group_tests_issues
| | * | | Committing clang-format changesgithub-actions2021-12-212-7/+7
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| * | | | (A) Address issue #2 and issue #4 of the group test failures.vchoi2022-01-044-10/+184
| |/ / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | See Kent's documentation "Designed to Fail Tests and Issues". (a) Fix for issue #2: --Print out meaningful message about max_lag when there is checksum error in loading an entry via H5C__load_entry(). --H5C.c: H5C_protect() (b) Fix for issue #4: --Allocate more space when the copy of the index read from the metadata file is bigger than the existing size --H5Fvfd_swmr.c: H5F_vfd_swmr_reader_end_of_tick() (B) When putting the old index into the delayed free list, use the old writer_index_offset instead of the current writer_index_offset --H5Fvfd_swmr.c: vfd_swmr_enlarge_shadow_index() (C) When there is error form calling H5F_vfd_swmr_process_eot_queue() in VFD_SWMR_ENTER(err) and VFD_SWMR_LEAVE(err), should report FAIL instead of "err" --H5private.h: VFD_SWMR_ENTER and VFD_SWMR_LEAVE macros (D) Add tests to verify issue #2 and issue #4 are fixed.
| * | | Address issue #1 and issue #3 of the group test failures.vchoi2021-12-214-2/+177
| | |/ | |/| | | | | | | | | | | | | | | | | | | See Kent's documentation "Designed to Fail Tests and Issues". (A) Fix for issue #1: HDassert the < and = cases between old and new entry length. John will take care of the > case. (B) Fix for issue #3: set the cache copy of page_size again if different from f->shared->fs_page_size.
| | * Merge pull request #49 from vchoi-hdfgroup/feature/vfd_swmrvchoi-hdfgroup2022-01-04511-14843/+31006
| | |\ | | |/ | |/| Feature/vfd swmr
| * | Merge pull request #48 from HDFGroup/feature/vfd_swmrvchoi-hdfgroup2021-12-191-10/+12
| |\ \ | |/ / |/| | Feature/vfd swmr
* | | Merge pull request #1296 from vchoi-hdfgroup/nfs_feature_vfd_swmrvchoi-hdfgroup2021-12-141-10/+12
|\ \ \ | | | | | | | | Nfs feature vfd swmr
| * | | Fix the failure triggered by running the bigset test with 2D dataset that ↵vchoi2021-12-141-10/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | expands for more than 200 times. It is due to the indexing error for the metadata file index and the change list array.
| * | | Merge pull request #47 from vchoi-hdfgroup/feature/vfd_swmrvchoi-hdfgroup2021-12-14159-3560/+6570
| |\ \ \ | | |/ / | | | | Feature/vfd swmr
| | * | Merge pull request #46 from HDFGroup/feature/vfd_swmrvchoi-hdfgroup2021-12-14191-4084/+8880
| | |\ \ | |_|/ / |/| | | Feature/vfd swmr
* | | | Committing clang-format changesgithub-actions2021-12-081-1/+1
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* | | | update the init_vfd_swmr_config to catch up the latest NFS pull requestmyang62021-12-081-2/+3
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* | | | Merge pull request #1247 from kyang2014/feature/vfd_swmrkyang20142021-12-084-3/+840
|\ \ \ \ | | | | | | | | | | Feature/vfd swmr
| * | | | Committing clang-format changesgithub-actions2021-12-071-3/+3
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| * | | | Revise comments to address the PR review.myang62021-12-071-2/+3
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| * | | | Committing clang-format changesgithub-actions2021-12-061-6/+5
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| * | | | Add comments.myang62021-12-061-0/+23
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| * | | | Add some comments.myang62021-12-011-0/+4
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| * | | | Merge branch 'indep_test' into feature/vfd_swmrMuqun Yang2021-12-014-3/+813
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| | * | | | Committing clang-format changesgithub-actions2021-12-011-225/+225
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| | * | | | Add the test for independence of reader and writer.myang62021-12-014-3/+813
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* | | | | | VFD SWMR: Normalization with develop (#1270)Dana Robinson2021-12-08155-3557/+5729
| | | | | | | | | | | | | | | | | | Brings many October-November changes from develop
* | | | | | Merge pull request #1208 from vchoi-hdfgroup/nfs_feature_vfd_swmrvchoi-hdfgroup2021-12-0733-524/+2310
|\ \ \ \ \ \ | |/ / / / / |/| | / / / | | |/ / / | |/| | | Nfs feature vfd swmr
| * | | | Add comments about the window test failure.vchoi2021-12-071-0/+1
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| * | | | Trying to fix the PR's window test failures.vchoi2021-12-071-1/+3
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| * | | | Merge branch 'nfs_feature_vfd_swmr' of ↵vchoi2021-12-070-0/+0
| |\ \ \ \ | | | | | | | | | | | | | | | | | | https://github.com/vchoi-hdfgroup/hdf5 into nfs_feature_vfd_swmr
| | * | | | Committing clang-format changesgithub-actions2021-12-073-28/+29
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| * | | | | Clang format changes.vchoi2021-12-073-28/+29
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| * | | | Changes to address feedback from PR review.vchoi2021-12-074-159/+167
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| * | | | Committing clang-format changesgithub-actions2021-11-1723-565/+566
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