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* [svn-r12167] Purpose:Fang Guo2006-03-281-1844/+1874
| | | | | | | | | | | Maintenance on Windows Description: Update solution file Solution: Platforms tested: Misc. update:
* [svn-r12166] Purpose:Fang Guo2006-03-281-0/+42
| | | | | | | | | | | Maintenance on Windows Description: Add in new test cross_read(dll) on Windows Solution: Platforms tested: Windows Misc. update:
* [svn-r12165] Purpose:Fang Guo2006-03-281-0/+7
| | | | | | | | | | | Maintenance on windows Description: Add in new test cross_read on Windows Solution: Platforms tested: Windows Misc. update:
* [svn-r12164] Purpose:Fang Guo2006-03-281-0/+105
| | | | | | | | | | | Maintenance on Windows Description: Add in new test cross_read on Windows Solution: Platforms tested: Windows Misc. update:
* [svn-r12163] Purpose:Fang Guo2006-03-281-0/+107
| | | | | | | | | | | Maintenance on Windows Description: Add in new tests cross_read on Windows Solution: Platforms tested: Windows Misc. update:
* [svn-r12162] Purpose:Quincey Koziol2006-03-287-862/+521
| | | | | | | | | | | | Code checkpoint Description: Check in fractal heap code to add basic support for skipping direct blocks when an object is too large to fit in one. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago)
* [svn-r12161] Purpose:Quincey Koziol2006-03-279-955/+5084
| | | | | | | | | | | | | | | | Code checkpoint Description: Checkpoint fractal heap code at a stable point in development. It appears that adding objects to heaps and reading them back out is now working properly (as long as there are no gaps in the heap and no standalone objects are created). Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Linux 2.4 (mir) w/64-bit & FORTRAN & C++ Solaris 9 (shanti) w/64-bit
* [svn-r12159] Purpose:Pedro Vicente Nunes2006-03-278-87/+92
| | | | | | | | | | | | | | | | | bug fix Description: h5repack was not dealing with family files Solution: use the toolslib function h5tools_open to open the file instead of H5Fopen in h5repack Platforms tested: linux solaris AIX Misc. update:
* [svn-r12158] Purpose:Pedro Vicente Nunes2006-03-276-292/+372
| | | | | | | | | | | | | | | | bug fix Description: h5dump was not printing attributes for the named datatype cases Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r12157] Purpose:Pedro Vicente Nunes2006-03-271-0/+0
| | | | | | | | | | | | | | bug fix Description: regenerate a binary file. the previous one was not being open on the scale offeset filter dataset, probably due to a solved bug with the corresponding binary file not being updated Solution: Platforms tested: linux Misc. update:
* [svn-r12155] Purpose:Quincey Koziol2006-03-261-58/+63
| | | | | | | | | | | Code optimization Description: Tweak file free space allocation routines to optimize them a bit. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r12154] Purpose:James Laird2006-03-241-2/+8
| | | | | | | | | | | | | | | Removed -march flag Description: The -march optimization flag is bad in some circumstances Solution: Prevented HDF5 from adding the -march archicture-specific optimization flag, so that users could have one version of HDF5 used by several different machines. Platforms tested: heping (one of the few platforms that affected by this small change)
* [svn-r12153] Purpose: MaintainenceRaymond Lu2006-03-241-4/+12
| | | | | | | Description: Added the new test cross_read.c to this "Makefile". Platforms tested: Simple change, no test is needed, only affects OpenVMS.
* [svn-r12151] Purpose: New testRaymond Lu2006-03-248-27/+314
| | | | | | | | | | | | | Description: cross_read.c is a new program to test reading data created on an OpenVMS, a little-endian, and a big-endian machine. The three data files are vms_data.h5, be_data.h5, and le_data.h5. To generate these data files, run gen_cross.c on these machines and change the file names. Platforms tested: fuss and h5committest Misc. update: MANIFEST
* [svn-r12150] Purpose:Pedro Vicente Nunes2006-03-241-12/+26
| | | | | | | | | | | | | | new tests for h5diff Description: added new tests for the bat file on windows Solution: Platforms tested: windows Misc. update:
* [svn-r12149] Purpose:James Laird2006-03-2341-272/+44
| | | | | | | | | | | | | | | | Bug fix Description: Previous checkin did a bad thing; 'make clean' failed in example directories. Solution: Fixed commence.am so that examples no longer break, and fixed a mistake in conclude.am. Platforms tested: heping (minor makefile change) Misc. update:
* [svn-r12148] Purpose:MuQun Yang2006-03-232-1/+33
| | | | | | | | | | | | | | | | | | | | | | | | | | | Add tests for optional APIs to support collective chunk IO Description: In order to test whether library picks up the user's options, The number of chunks need to be varied for different processes, Selection of the number of processes selected in one chunk also need to be varied. Solution: Create two cases, 1. Each chunk only selected by one unique process, this case library should use independent for collective call. 2. One-third of the processes occupies the top half of the whole domain, The rest of the processes occupies the lower half of the domain. The total number of chunk is a fixed number 8. Platforms tested: Linux 2.4 with mpich 1.2.6(only) Since I only checked in the code that handles the selection, haven't added any new tests yet. So it won't affect any platforms. Misc. update:
* [svn-r12147] Purpose:Fang Guo2006-03-231-8/+9
| | | | | | | | | | | Maintenance on Windows Description: Add in more bookmarks for website use Solution: Platforms tested: Misc. update:
* [svn-r12146] Purpose:Pedro Vicente Nunes2006-03-2314-18/+101
| | | | | | | | | | | | | | | | | bug fix Description: percent relative error was done using integer arythmetic; use floating point instead added the case for unsigned long long integer to float conversion Solution: Platforms tested: linux (32,64) AIX solaris Misc. update:
* [svn-r12145] Purpose:James Laird2006-03-231-13/+22
| | | | | | | | | | | | doc update Description: Mentioned bin/deploy tool in INSTALL docs. Also cleaned up some inconsistent tabs. Platforms tested: doc change only
* [svn-r12144] Purpose: MaintenanceElena Pourmal2006-03-231-10/+4
| | | | | | | | | | Description: Brought up VMS make file up-to-date Solution: Platforms tested: VMS server (this change doesn't affect any other platforms) Misc. update:
* [svn-r12143] Purpose:James Laird2006-03-2345-55/+278
| | | | | | | | | | | | | | Bug fix Description: make check-clean didn't clean results of example tests Solution: Fixed Makefiles so that check-clean recurses into example directories. Also a little Makefile cleanup. Platforms tested: mir, modi4, heping, copper
* [svn-r12142] Purpose:MuQun Yang2006-03-233-69/+104
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | change the array size of collective chunking features of parallel tests. Description: Previously array size for collective optimization tests including cchunk1, cchunk2, cchunk3, cchunk4, ccontw, ccontr, cschunkw, cschunkr, ccchunkw, ccchunkr are fixed, They are only valid for some good number of processors(1,2,3,4,6,8,12,16,24,32,48 etc). Recently there are more requests for parallel tests to be valid on some odd number of processes such as 5,7,11,13 etc. Solution: I change the array size to be dynamic rather than static. Now the fastest change array size is a function of mpi_size. dim2 = constant *mpi_size. After some tunings, theoretically the above tests should be valid for any number of processors. However, other parallel tests still need to be tuned. To verify the correctness of these tests, using mpirun -np 5 ./testphdf5 -b cchunk1 at heping. Platforms tested: h5committest(shanti is refused to be connected) at heping, 5 and 7 processes are used to verify the correctness. Misc. update:
* [svn-r12141] Purpose:MuQun Yang2006-03-231-0/+11
| | | | | | | | | | | | | | | | | | | | | | | | | | portable issue on windows Description: setvbuf on visual studio 2005 needs the size to be greater or equal to 2. <description of setvbuf from msdn library> Buffer size in bytes. Allowable range: 2 <= size <= INT_MAX (2147483647). Internally, the value supplied for size is rounded down to the nearest multiple of 2. h5import used linebuffer option of setvbuf for stderr and stdout and the size is 0 by default. This causes core dump with visual 2005 on windows 64-bit. Solution: 1. Use HDsetvbuf inside h5import.c, 2. Define HDsetvbuf inside windows H5pubconf.h for windows to work around the core dump of h5import test. This is probably a bug inside visual studio 2005. Platforms tested: h5commit(shanti is down) VS 6.0 on windows XP VS 8.0 on windows XP-64bit Misc. update:
* [svn-r12140] Purpose:MuQun Yang2006-03-231-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | portable issue on windows Description: setvbuf on visual studio 2005 needs the size to be greater or equal to 2. <description of setvbuf from msdn library> Buffer size in bytes. Allowable range: 2 <= size <= INT_MAX (2147483647). Internally, the value supplied for size is rounded down to the nearest multiple of 2. h5import used linebuffer option of setvbuf for stderr and stdout and the size is 0 by default. This causes core dump with visual 2005 on windows 64-bit. Solution: 1. Use HDsetvbuf inside h5import.c, 2. Define HDsetvbuf inside windows H5pubconf.h for windows to work around the core dump of h5import test. This is probably a bug inside visual studio 2005. Platforms tested: h5committest( shanti refuses to be connected) windows 6.0 at XP visual 2005 at XP-64bit Misc. update:
* [svn-r12139] Purpose:MuQun Yang2006-03-231-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | portibility issue to windows Description: setvbuf on visual studio 2005 needs the size to be greater or equal to 2. <description of setvbuf from msdn library> Buffer size in bytes. Allowable range: 2 <= size <= INT_MAX (2147483647). Internally, the value supplied for size is rounded down to the nearest multiple of 2. h5import used linebuffer option of setvbuf for stderr and stdout and the size is 0 by default. This causes core dump with visual 2005 on windows 64-bit. Solution: 1. Use HDsetvbuf inside h5import.c, 2. Define HDsetvbuf inside windows H5pubconf.h for windows to work around the core dump of h5import test. This is probably a bug inside visual studio 2005. Platforms tested: h5committest windows 6.0 at XP visual 2005 at XP-64bit Misc. update:
* [svn-r12138] Purpose: VMS portElena Pourmal2006-03-222-1/+38
| | | | | | | | | | | | | | Description: Unix remove function removes only the latest version of a file on VMS. Some of our tests create multiple versions of the testfiles and as a result, test programs may be confused, give false negative result, etc. Solution: Created HDremove_all function for VMS that removes all versions of the files. HDremove on VMS is an alias to HDremove_all. Platforms tested: VMS server and heping (to check that nothing is borken on UNIX side) Misc. update:
* [svn-r12137] Purpose: UpdateRaymond Lu2006-03-221-0/+2
| | | | | | | | | | | Description: OpenVMS doesn't support denormalized floating-point values. Disable the denormalized and special values for floating to floating-point tests. Platforms tested: OpenVMS - the only concerned machine. Misc. update:
* [svn-r12136] Purpose: UpdateRaymond Lu2006-03-221-6/+15
| | | | | | | | | Description: A few macro names have been changed. Enabled a few for test. Platforms tested: OpenVMS - the only concerned machine. Misc. update:
* [svn-r12135] Purpose:Fang Guo2006-03-222-5/+99
| | | | | | | | | | | Maintenance on Windows Description: Add in more comments Solution: Platforms tested: Misc. update:
* [svn-r12134] Purpose:Pedro Vicente Nunes2006-03-2237-1666/+1713
| | | | | | | | | | | | | | | | | | bug fix Description: 1) added a more explainative usage message 2) the percent relative error for the integer type (division) was being done using integer arythmetic; use floating point arythmetic instead 3) added a new test for integer percent Solution: Platforms tested: linux (32,64) AIX solaris Misc. update:
* [svn-r12133] Purpose:Quincey Koziol2006-03-222-13/+14
| | | | | | | | | | | Code cleanup Description: Update a couple of files that bin/reconfigure rearranged for me... :-) Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r12132] Purpose:Quincey Koziol2006-03-221-1/+3
| | | | | | | | | | | | | Code cleanup Description: Add H5E header to this header, to make certain that the errors in the "inline" routines are handled correctly. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Mac OSX (amazon)
* [svn-r12131] Purpose:Quincey Koziol2006-03-225-1/+11
| | | | | | | | | | | | Code update Description: Add new minor error, for heap metadata operations. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Mac OSX (amazon)
* [svn-r12130] Purpose:Quincey Koziol2006-03-222-23/+9
| | | | | | | | | | | | | | Disable debugging feature Description: Disable the "function stack" by default & take out it's dependency on the "enable-debug" configure flag. The function stack code can slow things down quite a bit and shouldn't be enabled for the upcoming alpha testing. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Mac OSX (amazon)
* [svn-r12129] Purpose:James Laird2006-03-221-2/+2
| | | | | | | | | | | | | | | Bug fix Description: The snapshot script was trying to install-doc, even though the docs are no longer included in the cvs repo. Solution: Replaced 'make install install-doc' with 'make install-all', which should have the same effect (installing the library and examples). Platforms tested: very minor change
* [svn-r12128] Purpose:Quincey Koziol2006-03-2211-48/+31
| | | | | | | | | | | Code cleanup Description: Clean up some compiler warnings (esp. those flagged on Windows builds) Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r12126] Purpose:Pedro Vicente Nunes2006-03-215-316/+261
| | | | | | | | | | | | | | | | | bug fix Description: the compare check for the datatype sign was not done in the correct place, causing invalid comparisons to be made Solution: put it on the correct place Platforms tested: linux 32, 64 AIX Misc. update:
* [svn-r12125] Purpose:Quincey Koziol2006-03-218-392/+1191
| | | | | | | | | | | | | | | Code checkpoint Description: Update fractal heap code to insert & read heaps up to 64MB in size (with my current configuration paramaters) and add initial support for iteratively walking down nested indirect blocks. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Solaris 9 (shanti) Linux 2.4 (mir) w/64-bit
* [svn-r12124] Purpose:Pedro Vicente Nunes2006-03-2016-81/+38
| | | | | | | | | | | | | | | | | bug fix Description: 1) the compare flag test was not being put in a correct place, making comparisons attempts that were not supposed to be done 2) some duplicate warnings were being made Solution: eliminate the duplicate warnings, put the if compare flag on the correct place Platforms tested: linux 32, 64 solaris Misc. update:
* [svn-r12123] Purpose:MuQun Yang2006-03-201-12/+14
| | | | | | | | | | | | | | Add more comments Description: Add more comments to H5Dmpio.c, which describes a little bit more about collective IO management. Solution: Platforms tested: Only test at heping since only comments were added. Misc. update:
* [svn-r12122] Purpose:Quincey Koziol2006-03-186-7/+264
| | | | | | | | | | | Code update Description: Add basics of routine for reading information back out of a fractal heap. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r12121] Purpose: MaintenanceElena Pourmal2006-03-181-0/+6
| | | | | | | | | | | Description: cache_api test was missing in the make.com file Solution: Added the missing file Platforms tested: VMS Misc. update:
* [svn-r12120] Purpose: MaintenanceElena Pourmal2006-03-181-1/+1
| | | | | | | | | | | | Description: VMS stat structure doesn't have st_blocks filed. H5_HAVE_STAT_ST_BLOCKS was defined in h5pubconf.h and therefore compilation of big.c failed on VMS. Solution: Undefined H5_HAVE_STAT_ST_BLOCKS in h5pubconf.h Platforms tested: VMS server (change is local to VMS only) Misc. update:
* [svn-r12119] Purpose: MaintenanceElena Pourmal2006-03-181-9/+3
| | | | | | | | | | | | Description: Linking of cache test failed on VMS due to the missing cache_common.* files Solution: Added cache_common.* files to the approriate places in the make.com file. Platforms tested: VMS server (this change is for VMS only) Misc. update:
* [svn-r12118] Purpose:Quincey Koziol2006-03-182-14/+29
| | | | | | | | | | | | | Checkpoint code Description: Rework code to support increasing size of root indirect block, in order to add [at least] a second row of direct blocks. Platforms tested: FreeBSD 4.11 (sleipnir) Solaris 9 (shanti) w/64-bit Linux 2.4 (mir)
* [svn-r12117] Purpose:MuQun Yang2006-03-181-38/+25
| | | | | | | | | | | | | | | | | | | | | Enhancing the optimiziation of collective IO per chunk Description: When the user does one of the following two things: 1. to do collective IO per chunk without using our optimization code 2. or the user passes the percent of number of process per chunk to be 0 when choosing to do collective IO per chunk It is not necessary that the library uses MPI-IO collective calls to do any optimization. Solution: Modify the code so that no MPI communication-involved analyses will be done for the above cases. Chunk addresses are obtained globally and IO modes are assigned to collective always. Platforms tested: h5committest Misc. update:
* [svn-r12116] Purpose: Bug fix.Raymond Lu2006-03-171-2/+2
| | | | | | | | | | Description: Two semicolons were missing in the code change for VAX support. Solution: Fixed. Platforms tested: fuss - too simple. Misc. update:
* [svn-r12115] Purpose: Change codes in a more appropriate way.Raymond Lu2006-03-175-28/+33
| | | | | | | | | | | | Description: Yesterday, H5E_NONE_MAJOR and H5E_NONE_MINOR were added to error API by hand. Solution: Today, correct the change by hand with the tool hdf5/bin/make_err. The change by hand is only in src/H5err.txt. Platforms tested: fuss - simple change. Misc. update:
* [svn-r12114] Purpose:Quincey Koziol2006-03-171-7/+11
| | | | | | | | | | | | Code cleanup Description: Re-alphabetize the POSIX routines (again). Also, add proper prototype to HDrand() definition. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
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