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* Tools refactorAllen Byrne2020-07-1560-4667/+3901
| | | | | | Move error_stack setup to tools library Add structure for h5dump properties Eliminate duplicated h5diff functions Use properties structure in place of argument lists.
* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-142-29/+8
|\ | | | | | | | | | | * commit '806f5b5b2a280072f62f58c48e93acdc84f2b3ae': Removed POSIX #defines from configure on Solaris. Fallback to older time functions in new timer code.
| * Merge pull request #2692 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-07-142-29/+8
| |\ | | | | | | | | | | | | | | | | | | | | | to develop * commit 'b8013380792a3503003f0a2bd60d7541656b03c7': Removed POSIX #defines from configure on Solaris. Fallback to older time functions in new timer code.
| | * Removed POSIX #defines from configure on Solaris.Dana Robinson2020-07-141-6/+0
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| | * Fallback to older time functions in new timer code.Dana Robinson2020-07-141-23/+8
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* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-117-5/+94
|\ \ | |/ | | | | | | | | * commit 'b480d0a38b1e265c55c74262bf384d255a33e07b': Remove path to szip header file from AM_CPPFLAGS when configure check of libsz fails. Fix for HDFFV-10830. HDFFV-11116 Add option for install location of Fortran MOD files
| * Merge pull request #2686 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-07-111-1/+4
| |\ | | | | | | | | | | | | * commit '800f93f7c994f88dfa716746153ded4b1e690e3a': Remove path to szip header file from AM_CPPFLAGS when configure check of libsz fails. Fix for HDFFV-10830.
| | * Merge branch 'develop' of ↵Larry Knox2020-07-1023-1079/+1078
| | |\ | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop
| | * | Remove path to szip header file from AM_CPPFLAGS when configure check of ↵Larry Knox2020-07-101-1/+4
| | | | | | | | | | | | | | | | | | | | | | | | libsz fails. Fix for HDFFV-10830.
| * | | Merge pull request #2684 in HDFFV/hdf5 from ↵Allen Byrne2020-07-116-4/+90
| |\ \ \ | | |_|/ | |/| | | | | | | | | | | | | | | | | | ~BYRN/hdf5_adb:feature/HDFFV-11116-trilabs-mod-location to develop * commit '07a52ecb2ffa1d8d32f06db23470833899db3deb': HDFFV-11116 Add option for install location of Fortran MOD files
| | * | HDFFV-11116 Add option for install location of Fortran MOD filesAllen Byrne2020-07-096-4/+90
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* | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-0921-1074/+1055
|\ \ \ \ | |/ / / | | / / | |/ / |/| | * commit 'f5da9b1befeb81aa9f4d97df3ec606f801807420': Minor changes from normalization with 1.10
| * | Merge pull request #2683 in HDFFV/hdf5 from ↵Dana Robinson2020-07-0921-1074/+1055
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_normalization to develop * commit '127d1cfdf06e9c1cd264595c496a063848358a0a': Minor changes from normalization with 1.10
| | * | Minor changes from normalization with 1.10Dana Robinson2020-07-0921-1074/+1055
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* | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-083-6/+24
|\ \ \ \ | |/ / / | | | | | | | | | | | | | | | | * commit '188c43b8ee78d830c22f30fb9adb802e46722fcd': Change load path in libhdf5_java.dylib to unversioned libhdf5.dylib for junit tests on Macs. Fixes Autotools builds on Solaris after monotonic timer changes
| * | | Merge pull request #2680 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-07-072-5/+23
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit 'd9105b2fcf04f36ea348bf9726a49c05cacc0b78': Fixes Autotools builds on Solaris after monotonic timer changes
| | * | | Fixes Autotools builds on Solaris after monotonic timer changesDana Robinson2020-07-072-5/+23
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | clock_gettime() wasn't being found, so some configure changes were needed to set an appropriate POSIX level and use a C99 compiler. This required several compiler flag changes. Autotools only
| * | | | Merge pull request #2677 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-07-071-1/+1
| |\ \ \ \ | | |/ / / | |/| | / | | | |/ | | |/| * commit 'da607fe4638c9cc08f717fbe65e799c1676c17ff': Change load path in libhdf5_java.dylib to unversioned libhdf5.dylib for junit tests on Macs.
| | * | Change load path in libhdf5_java.dylib to unversioned libhdf5.dylib forLarry Knox2020-07-071-1/+1
| |/ / | | | | | | | | | junit tests on Macs.
* | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-032-2/+2
|\ \ \ | |/ / | | | | | | | | | * commit 'd52b27ad1d8142945a92310b79ab79171e76a3c3': Address CMake and deprecated API build failures from monotonic timer patch.
| * | Merge pull request #2673 in HDFFV/hdf5 from monotonic_timer_fix_01 to developQuincey Koziol2020-07-032-2/+2
| |\ \ | | | | | | | | | | | | | | | | * commit '13c9b3768e6193db89d06faf59194b77d7747f45': Address CMake and deprecated API build failures from monotonic timer patch.
| | * | Address CMake and deprecated API build failures from monotonic timer patch.Quincey Koziol2020-07-032-2/+2
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* | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-031-1/+1
|\ \ \ | |/ / | | | | | | | | | * commit '7443e5d53d1c6f15e095de7c44bcc3a5a46d9cf7': Add missing '"'.
| * | Merge pull request #2672 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-07-021-1/+1
| |\ \ | | | | | | | | | | | | | | | | * commit '870e3ba3f45e90a43ea824d67cc8562aa63a3f6f': Add missing '"'.
| | * | Add missing '"'.Larry Knox2020-07-021-1/+1
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* | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-023-1/+20
|\ \ \ | |/ / | | | | | | | | | * commit '4c2071bfd3270dc3a688914b4a058147b94b7023': Lib files needed are now copied to a subdirectory in the java/test directory, and on Macs the loader path for libhdf5.xxxs.so is changed in the temporary copy of libhdf5_java.dylib. Fix for HDFFV-11063
| * | Merge pull request #2671 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-07-026-224/+222
| |\ \ | |/ / |/| | | | | | | | * commit '88e8597cdef826c1087e4ec1383657a91dcb2a43': Small changes discovered with mingw and windows defines moved
* | | Small changes discovered with mingw and windows defines movedAllen Byrne2020-07-026-224/+222
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| * | Merge pull request #2670 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-07-023-1/+20
| |\ \ |/ / / | | | | | | | | | * commit 'fc69de0e8ae30e80c1c3c542b156226a75444525': Lib files needed are now copied to a subdirectory in the java/test directory, and on Macs the loader path for libhdf5.xxxs.so is changed in the temporary copy of libhdf5_java.dylib. Fix for HDFFV-11063
| * | Lib files needed are now copied to a subdirectory in the java/testLarry Knox2020-07-023-1/+20
|/ / | | | | | | | | | | directory, and on Macs the loader path for libhdf5.xxxs.so is changed in the temporary copy of libhdf5_java.dylib. Fix for HDFFV-11063
* | Merge pull request #2668 in HDFFV/hdf5 from monotonic_timer to developQuincey Koziol2020-07-0223-909/+1817
|\ \ | |/ |/| | | | | | | | | | | | | | | | | | | | | * commit '7371c83f9777b34b31909e99e052398b93c31bed': Remove non-existent example Add new source files to CMake build Clean up warnings va_arg -> HDva_arg Refactor code to remove remaining checks for H5_HAVE_GETTIMEOFDAY scattered around in various places. Also clean up iopipe.c. Correct mistake in H5_now_usec calculation for clock_gettime. Remove detection for mach/mach/time.h, since we're no longer using the time routines from that header. Update H5_now_usec to prefer using clock_gettime. Changes to make timers within the library monotonic.
| * Remove non-existent exampleQuincey Koziol2020-06-301-2/+2
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| * Merge remote-tracking branch 'origin/develop' into monotonic_timerQuincey Koziol2020-06-303-7/+17
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| * | Add new source files to CMake buildQuincey Koziol2020-06-282-0/+2
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| * | Clean up warningsQuincey Koziol2020-06-287-54/+53
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| * | va_arg -> HDva_argQuincey Koziol2020-06-271-1/+1
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| * | Merge remote-tracking branch 'origin/develop' into monotonic_timerQuincey Koziol2020-06-273-54/+134
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| * | | Refactor code to remove remaining checks for H5_HAVE_GETTIMEOFDAY scattered ↵Quincey Koziol2020-06-276-328/+190
| | | | | | | | | | | | | | | | around in various places. Also clean up iopipe.c.
| * | | Merge remote-tracking branch 'origin/develop' into monotonic_timerQuincey Koziol2020-06-261843-181238/+348913
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| * | | | Correct mistake in H5_now_usec calculation for clock_gettime.Quincey Koziol2017-09-241-1/+1
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| * | | | Remove detection for mach/mach/time.h, since we're no longer using theQuincey Koziol2017-09-243-8/+0
| | | | | | | | | | | | | | | | | | | | time routines from that header.
| * | | | Update H5_now_usec to prefer using clock_gettime.Quincey Koziol2017-09-241-1/+8
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| * | | | Merge remote-tracking branch 'origin/develop' into monotonic_timerQuincey Koziol2017-09-0321-889/+846
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| * | | | | Changes to make timers within the library monotonic.Quincey Koziol2017-09-0315-520/+1563
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* | | | | | Merge pull request #2669 in HDFFV/hdf5 from ↵Jake Smith2020-06-301-1/+1
|\ \ \ \ \ \ | |_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:bugfix/HDftell_macro_typo to develop * commit 'ef05e68c38d2086c6f262744b4087f65a6e58957': Fix typo in HDftell macro definition: 'ftello -> ftell'
| * | | | | Fix typo in HDftell macro definition: 'ftello -> ftell'Jacob Smith2020-06-291-1/+1
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* | | | | Merge pull request #2609 in HDFFV/hdf5 from ~BMRIBLER/hdf5-bmr:develop to ↵Binh-Minh Ribler2020-06-302-1/+15
|\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop Fix HDFFV-11053 (CVE-2020-10810) * commit 'b155a777629e991374fa2f8609719cb861de4cc2': Changed wording in comment. - added comment to explain a kluge - added the associated entry to release notes Fix HDFFV-11053
| * | | | | Changed wording in comment.Binh-Minh Ribler2020-06-301-2/+2
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| * | | | | - added comment to explain a klugeBinh-Minh Ribler2020-06-292-1/+11
| | | | | | | | | | | | | | | | | | | | | | | | - added the associated entry to release notes
| * | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Binh-Minh Ribler2020-06-29123-4381/+5132
| |\ \ \ \ \ | | |/ / / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '30776671fb0a27a98b0640aa968f850241a862ce': (31 commits) * Fix intermittent error with Splitter VFD. Mismatch in time of test file creation was creating false negatives. Added note for HDFFV-10591. Fix HDFFV-10591 Reduce overhead for H5open, which is involved in the public symbols like H5T_NATIVE_INT, etc. Remove unnecessary version conditions for Clang compilers. Fix for HDFFV-10961: Couple changes to the tests' usage output files for h5clear. Fix for HDFFV-10961: add description to usage for --increment option. Add c++ to --enable-sanitize-checks option. Remove duplicate entries in MANIFEST. Make changes to CMake CompilerFlags.cmake files so extra flags are loaded for non-GNU compilers. Fix MANIFEST Add tests for all version to H5_NO_DEPRECATED_SYMBOLS section and to section for current version, with and without default API version flags. HDFFV-11000: update-testh5cc.sh.in to test sample versioned functions in HDF5 1.10, 1.12 and develop. Remember the info for the last ID looked up for a given ID type. Eliminate allocating file & memory offset & length arrays when performing I/O on a single element. Update new clang files to not pick up clang as vendor for pgCC. Add new files to MANIFEST Temporary demotion of 2 -Werror warning flags that fail on macos 10.12 Remove Production flag unknown to Apple clang. Remove redundant metadata cache tagging from some low-level internal chunk functions. The metadata cache tagging has already been done by routines further up the call stack. Clean up code to get clang version in config/linux-gnulibc1 Minor normalizations with HDF5 1.10. Add flags from config/clang-warnings/*general files to H5 C and CXX flags for all versions of Clang and Clang++ compilers. Switched from cut to awk in testcheck_version.sh.in to avoid dependence on tab vs. " " in version definitions in H5public.h. ...
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