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* [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll ↵Larry Knox2014-04-2547-118/+22
| | | | | | | | | | | back fix for removing rpaths from l ib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co nfigure option was invoked. Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines. Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
* [svn-r25113] Fixed Subversion EOL and executable attributes. No code changes.Dana Robinson2014-04-2534-2716/+2716
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* [svn-r25112] Description:Quincey Koziol2014-04-251-1/+4
| | | | | | | | Revert r25081 Tested on: MacOSX/64 10.9.2 (amazon) w/FORTRAN & parallel (h5committest not necessary)
* [svn-r25108] Description:Binh-Minh Ribler2014-04-253-6/+29
| | | | | | | | | | - Put back Exception::printError for backward compatibility - Added static member function Exception::printErrorStack to print error stack without an instance of Exception. Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r25103] Correct installed menu nameAllen Byrne2014-04-251-1/+2
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* [svn-r25100] Added -V to example command line.Allen Byrne2014-04-251-1/+2
| | | | Added note about INSTALLDIR.
* [svn-r25098] Disable fortran by defaultAllen Byrne2014-04-251-9/+6
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* [svn-r25097] Description:Quincey Koziol2014-04-259-135/+142
| | | | | | | | | | | Make progress toward moving from DXPL IDs to property list structures within the library. Also move the signature location code from the H5F package to the H5FD package, where it's a better fit. Also, clean up some more compiler warnings along the way. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest forthcoming)
* [svn-r25096] Bug: HDFFV-8433Albert Cheng2014-04-242-1/+73
| | | | | | | | | | | Need to unify Windows release process (zip file) and Unix release process (bin/release-> tarfile) Solution: Added a new option (zip) to generate Windows zip file from the release tarball. Tested: by hand running "bin/release ... gzip zip" to verify zip file looks right. Allen and Dana then confirmed the zip file can be used to build and test HDF5 library without error.
* [svn-r25092] Description:Quincey Koziol2014-04-247-316/+330
| | | | | | | | | | More migration to using H5F_io_info_t pointers and away from using property list IDs internally. Also, clean up some compiler warnings in the cache code. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest forthcoming)
* [svn-r25088] Description:Quincey Koziol2014-04-235-63/+93
| | | | | | | | | Introduce "file I/O info" struct, to hold file & dxpl pointers, and start propagating up through library. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest coming)
* [svn-r25085] Comment out under-development codeAllen Byrne2014-04-231-14/+14
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* [svn-r25084] Description:Quincey Koziol2014-04-2340-359/+539
| | | | | | | | | Begin process of migrating from using property list IDs internally to the library to using the internal generic property list data structure. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest forthcoming)
* [svn-r25081] Bug HDFFV-8625, HDFFV-8639, HDFFV-8745:Albert Cheng2014-04-2211-11/+66
| | | | | | | | | | | | h5diff issues "unable to read attribute" error message when comparing two files Description: h5diff did not handle attributes of variable length strings correctly. It created the wrong memory type if one but not both compared attributes are of the variable strings type. It ended in H5Aread() failure. Solution: We decided to treat the case when one type is variable length string and the other is not as incomparable. That bypassed the above error. We still need to figure out the proper way, if possible, to compare variable string with non-variable string types. Tested: h5committested plus tested in Swallow (OS X 10.8).
* [svn-r25075] Correct the install folder logic.Allen Byrne2014-04-222-19/+32
| | | | Tested: local linux and Mac
* [svn-r25061] Description:Binh-Minh Ribler2014-04-1722-54/+325
| | | | | | | | | | | Put back overloaded functions for backward compatibility: - were replaced by better prototyped versions, such as Attribute::getName. - were modified to add const to constant arguments. Added notes for future removal in documentation. Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r25057] Description:Frank Baker2014-04-161-1/+1
| | | | Update copyright notice to include 2014.
* [svn-r25054] Merge changes to RELEASE.txt for 1.8.13 release:Larry Knox2014-04-161-35/+64
| | | | | | | | | Reviewed and revised version information for unix daily tested machines in supported a d tested platforms sections. Added description of LD_LIBRARY_PATH change to configure and using scripts to compile nd run installed example files to Bug Fixes/Configuration section. Text change only.
* [svn-r25045] Fixed a few missing lines of code that were not merged when theDana Robinson2014-04-141-5/+15
| | | | | | | | | | | core VFD paging changes were brought over. Tested on: 32-bit LE linux (jam) 64-bit LE linux (koala) 64-bit BE linux (ostrich) All were tested with HDF5_DRIVER set to "core_paged".
* [svn-r25043] Correct CPPFLAGS value.Allen Byrne2014-04-142-2/+2
| | | | Correct test DEPENDS format.
* [svn-r25034] Snapshot version 1.9 release 177HDF Tester2014-04-1313-26/+26
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* [svn-r25025] Description:Binh-Minh Ribler2014-04-121-0/+2
| | | | | | Added: ./c++/src/header_files/hdf_logo.jpg ./c++/src/header_files/help.jpg
* [svn-r25020] Description:Binh-Minh Ribler2014-04-128-15/+21
| | | | | | | | | | - Fixed a few comments that Doxygen gave warnings on. - Removed stylesheet from configuration so Doxygen will use the default stylesheet and removed the CLANG-related lines to eliminate another error since we're not using that feature, so the lines should not present. (from cpp_doc_config) Platforms tested: Linux/32 2.6 (jam) - only changing comments
* [svn-r25019] Description:Binh-Minh Ribler2014-04-111-18/+19
| | | | | | | Updated configuration file to use Doxygen 1.8.5 properly. Verified with Doxygen 1.8.5 on Jam, using bin/release. After committing, this will be checked out and verified again to make sure.
* [svn-r25009] Add missing mod file to installAllen Byrne2014-04-101-0/+4
| | | | Tested: local linux
* [svn-r25005] Update release docsAllen Byrne2014-04-094-32/+31
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* [svn-r25002] By Permission: Add missing mod file to installAllen Byrne2014-04-091-0/+2
| | | | Tested: local linux
* [svn-r25001] Cast as integer to verify routine to remove intel warning.Scot Breitenfeld2014-04-091-4/+4
| | | | Tested: jam (intel)
* [svn-r24999] Bugfix: HDFFV-8639 Albert Cheng2014-04-091-3/+7
| | | | | | | | | | | h5diff segfaults with user's files Solution: Added a variable to indicate if real data are in the buffer and will call H5Dvlen_reclaim() only when real data are in the buffer. Tested: with the user provided data files and no more segmentaion fault. Also h5committ tested.
* [svn-r24998] Description:Quincey Koziol2014-04-0927-56/+448
| | | | | | | | Check in Neil's changes for correctly handling case where library is reinitialized through a deprecated routine. Tested on: Linux 2.4.x/32 (jam)
* [svn-r24997] Added compiler versions for mpich to settings file and ↵Larry Knox2014-04-0921-96/+184
| | | | | | | | | | | | | configure summary. For make installcheck, compile and run installed examples using the installed scripts. They were being compiled but not run. Add Fortran2003 examples to the run-ex-fortran script when fortran2003 is enabled. Set flag to -O3 in production mode for Intel compilers other than those with specified other settings. Gentoo patches: Remove unnecessary setting of LD_LIBRARY_PATH from configure. Prevent potential array subscript out of bounds error in perform/pio_engine.c and sio_engine.c. Tested with h5committest on jam, koala, ostrich and platypus, on emu and kite, and parallel tests on jam, koala and platypus with mpich built with gnu 4.8.2 and with intel compilers.
* [svn-r24996] Description:Binh-Minh Ribler2014-04-094-74/+2196
| | | | | | | | Fixed some minor documentation mistakes. Updated configuration file for Doxygen. Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam)
* [svn-r24995] Description:Quincey Koziol2014-04-093-39/+63
| | | | | | | Improve checks for NULL buffer from user during H5Dread/H5Dwrite calls. Tested on: Linux/32 2.4.x (jam) w/gcc
* [svn-r24994] Purpose: Removed some warningsBinh-Minh Ribler2014-04-096-15/+42
| | | | | | | | | Description: Turned on warnings and removed some of those. Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r24993] Purpose:Dana Robinson2014-04-0914-91/+529
| | | | | | | | | | | | | | | Adds write tracking to the core VFD, which can be configured via the H5Pset/get_core_write_tracking() API call. When enabled and writing to the backing store is enabled, this feature will track writes and only write out the changed bytes on flush/close. Tested on: 32-bit LE linux (jam) w/ Fortran and C++ 64-bit BE linux (ostrich) 64-bit Darwin 12.5.0 (kite) All were tested using the core VFD w/ paging on (core_paged in the VFD list). Make check-vfd was also tested on jam.
* [svn-r24991] Purpose: Fixed HDFFV-3384Binh-Minh Ribler2014-04-0917-35/+33
| | | | | | | | | | Description: - Added const to const arguments - Fixed miscellaneous comments Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r24989] Problem:Albert Cheng2014-04-091-1/+1
| | | | | | | | | | | | | AIX compiler complains that: ex_ds1.f90, line 89.16: 1512-050 (W) Field separator is missing, in literal FMT specifier, after edit descriptor X. A comma is assumed. Line 89: WRITE(*,'(/,5X 3(A,1X),I0,A,L1)') 'Is',TRIM(DS_1_NAME),& Solution: Added the missing comma after "5X". Tested: AIX system.
* [svn-r24987] HDFFV-8709, HDFFV-8776, HDFFV-8777, HDFFV-8778Allen Byrne2014-04-084-19/+23
| | | | | | Apply user patches, regenerate and patch results for windows. Miminum changes tested locally
* [svn-r24986] Comparing REALs now converts all REALs to double precision and ↵Scot Breitenfeld2014-04-087-287/+214
| | | | | | then compares if the two numbers are equivalent. Tested: jam (gnu, intel)
* [svn-r24985] reverted the r24984 update.Scot Breitenfeld2014-04-089-137/+96
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* [svn-r24984] Added overload operatorZ to compare REALs for tests.Scot Breitenfeld2014-04-089-96/+137
| | | | Tested on jam (gfortran, (-r8))
* [svn-r24983] Purpose: Fix HDFFV-8367Binh-Minh Ribler2014-04-073-0/+191
| | | | | | | | | | | | | | Description: - Added wrappers to CommomFG for H5Oget_info_by_name() to get a child object's type (requested by user) H5O_type_t childObjType(const H5std_string& objname) const; H5O_type_t childObjType(const char* objname) const; H5O_type_t childObjType(hsize_t index, H5_index_t index_type=H5_INDEX_NAME, H5_iter_order_t order=H5_ITER_INC, const char* objname=".") const; - Added tests to tobject.cpp Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r24979] Maintenance: Addressed DT failures on emu in 64-bit mode and on ↵Elena Pourmal2014-04-0712-31/+50
| | | | | | | | macs, linux, powerpc for non-standard sizes of reals. Platforms tested: jam, ostrich, platypus, kite, quail, emu
* [svn-r24978] Removed the .mod (and .raw) files when make clean is issued.Scot Breitenfeld2014-04-072-14/+38
| | | | tested (emu).
* [svn-r24977] Remove WIN32 AND NOT CYGWIN if blocks - should be just WIN32Allen Byrne2014-04-071-13/+12
| | | | Tested: local linux CMake
* [svn-r24975] Description:Binh-Minh Ribler2014-04-071-0/+1
| | | | Added c++/test/tobject.cpp
* [svn-r24974] Maintenance: Fixed daily tests parallel tests compilation failuresElena Pourmal2014-04-074-4/+8
| | | | Platforms tested: jam
* [svn-r24973] Description:Binh-Minh Ribler2014-04-071-0/+1
| | | | Added c++/test/tobject.cpp
* [svn-r24972] Maintenance: Fixed another typo; see HDFFV-8714Elena Pourmal2014-04-061-1/+1
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* [svn-r24970] Maintenance: Fixed a typo in a comment line (see HDFFV-8714)Elena Pourmal2014-04-061-1/+1
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