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* Merge pull request #58 from HDFGroup/feature/vfd_swmrvchoi-hdfgroup2022-02-1950-46/+1670
|\ | | | | VFD SWMR: Aux process changes (#1451)
| * VFD SWMR: Aux process changes (#1451)Dana Robinson2022-02-1850-46/+1670
| | | | | | | | | | | | | | | | | | | | | | * Removed the aux process submodule * Directly added aux process files after submodule delete * Updated Akadio copyright on appropriate files * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* | Merge pull request #56 from HDFGroup/feature/vfd_swmrvchoi-hdfgroup2022-02-1751-190/+942
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| * Merge pull request #1445 from derobins/vfd_swmr/licenseDana Robinson2022-02-1746-78/+227
| |\ | | | | | | Updated VFD SWMR's Akadio license
| | * Updated the submodule to point to the correct commit so the tests passDana Robinson2022-02-171-0/+0
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| | * Updated VFD SWMR's Akadio licenseDana Robinson2022-02-1745-78/+227
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| * Merge pull request #1333 from raylu-hdf/raylu_aux_processraylu-hdf2022-01-318-11/+215
| |\ | | | | | | Changes Related to the Auxiliary Process
| | * Enable submodule checkout for vfd_swmr.Ray Lu2022-01-281-0/+2
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| | * Committing clang-format changesgithub-actions2022-01-041-11/+12
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| | * Rearragned how the auxiliary process is tested: let the test script launch ↵Ray Lu2022-01-047-32/+90
| | | | | | | | | | | | it if the --enable-aux-process option is enabled during configure.
| | * Added the option to run the auxiliary process ('-A'). For now, it's enabled ↵Ray Lu2021-12-171-3/+146
| | | | | | | | | | | | by hand for testing.
| * | Updated utils/vfd_swmr submodule commit to point to HEAD (#1385)Dana Robinson2022-01-241-0/+0
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| * | Merge pull request #1346 from vchoi-hdfgroup/obj_reg_ref_feature_vfd_swmrvchoi-hdfgroup2022-01-132-101/+500
| |\ \ | | | | | | | | Obj reg ref feature vfd swmr
| | * | Committing clang-format changesgithub-actions2022-01-101-157/+156
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| | * | Modifications to test/vfd_swmr_dsetops_writer.c for testing references.vchoi2022-01-102-79/+479
| | | | | | | | | | | | | | | | Add test for references to test/testvfdswmr.sh.in.
| | * | Merge pull request #51 from vchoi-hdfgroup/feature/vfd_swmrvchoi-hdfgroup2022-01-076-12/+360
| | |\ \ | |_|/ / |/| | | Feature/vfd swmr
* | | | Merge pull request #50 from HDFGroup/feature/vfd_swmrvchoi-hdfgroup2022-01-076-12/+360
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| * | | Merge pull request #1322 from vchoi-hdfgroup/group_tests_issuesvchoi-hdfgroup2022-01-056-12/+360
| |\ \ \ | | |_|/ | |/| | Group tests issues
| | * | Committing clang-format changesgithub-actions2022-01-041-9/+8
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| | * | Merge branch 'group_tests_issues' of https://github.com/vchoi-hdfgroup/hdf5 ↵vchoi2022-01-042-7/+7
| | |\ \ | | | | | | | | | | | | | | | into group_tests_issues
| | | * | Committing clang-format changesgithub-actions2021-12-212-7/+7
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| | * | | (A) Address issue #2 and issue #4 of the group test failures.vchoi2022-01-044-10/+184
| | |/ / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | See Kent's documentation "Designed to Fail Tests and Issues". (a) Fix for issue #2: --Print out meaningful message about max_lag when there is checksum error in loading an entry via H5C__load_entry(). --H5C.c: H5C_protect() (b) Fix for issue #4: --Allocate more space when the copy of the index read from the metadata file is bigger than the existing size --H5Fvfd_swmr.c: H5F_vfd_swmr_reader_end_of_tick() (B) When putting the old index into the delayed free list, use the old writer_index_offset instead of the current writer_index_offset --H5Fvfd_swmr.c: vfd_swmr_enlarge_shadow_index() (C) When there is error form calling H5F_vfd_swmr_process_eot_queue() in VFD_SWMR_ENTER(err) and VFD_SWMR_LEAVE(err), should report FAIL instead of "err" --H5private.h: VFD_SWMR_ENTER and VFD_SWMR_LEAVE macros (D) Add tests to verify issue #2 and issue #4 are fixed.
| | * | Address issue #1 and issue #3 of the group test failures.vchoi2021-12-214-2/+177
| |/ / |/| | | | | | | | | | | | | | | | | | | | See Kent's documentation "Designed to Fail Tests and Issues". (A) Fix for issue #1: HDassert the < and = cases between old and new entry length. John will take care of the > case. (B) Fix for issue #3: set the cache copy of page_size again if different from f->shared->fs_page_size.
| | * Merge pull request #49 from vchoi-hdfgroup/feature/vfd_swmrvchoi-hdfgroup2022-01-04511-14843/+31006
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* | | Merge pull request #48 from HDFGroup/feature/vfd_swmrvchoi-hdfgroup2021-12-191-10/+12
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| * | Merge pull request #1296 from vchoi-hdfgroup/nfs_feature_vfd_swmrvchoi-hdfgroup2021-12-141-10/+12
| |\ \ | | | | | | | | Nfs feature vfd swmr
| | * | Fix the failure triggered by running the bigset test with 2D dataset that ↵vchoi2021-12-141-10/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | expands for more than 200 times. It is due to the indexing error for the metadata file index and the change list array.
| | * | Merge pull request #47 from vchoi-hdfgroup/feature/vfd_swmrvchoi-hdfgroup2021-12-14159-3560/+6570
| | |\ \ | |_|/ / |/| | | Feature/vfd swmr
* | | | Merge pull request #46 from HDFGroup/feature/vfd_swmrvchoi-hdfgroup2021-12-14191-4084/+8880
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| * | | Committing clang-format changesgithub-actions2021-12-081-1/+1
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| * | | update the init_vfd_swmr_config to catch up the latest NFS pull requestmyang62021-12-081-2/+3
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| * | | Merge pull request #1247 from kyang2014/feature/vfd_swmrkyang20142021-12-084-3/+840
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| | * | | Committing clang-format changesgithub-actions2021-12-071-3/+3
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| | * | | Revise comments to address the PR review.myang62021-12-071-2/+3
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| | * | | Committing clang-format changesgithub-actions2021-12-061-6/+5
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| | * | | Add comments.myang62021-12-061-0/+23
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| | * | | Add some comments.myang62021-12-011-0/+4
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| | * | | Merge branch 'indep_test' into feature/vfd_swmrMuqun Yang2021-12-014-3/+813
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| | | * | | Committing clang-format changesgithub-actions2021-12-011-225/+225
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| | | * | | Add the test for independence of reader and writer.myang62021-12-014-3/+813
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| * | | | | VFD SWMR: Normalization with develop (#1270)Dana Robinson2021-12-08155-3557/+5729
| | | | | | | | | | | | | | | | | | Brings many October-November changes from develop
| * | | | | Merge pull request #1208 from vchoi-hdfgroup/nfs_feature_vfd_swmrvchoi-hdfgroup2021-12-0733-524/+2310
| |\ \ \ \ \ | | |/ / / / | |/| | / / | | | |/ / | | |/| | Nfs feature vfd swmr
| | * | | Add comments about the window test failure.vchoi2021-12-071-0/+1
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| | * | | Trying to fix the PR's window test failures.vchoi2021-12-071-1/+3
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| | * | | Merge branch 'nfs_feature_vfd_swmr' of ↵vchoi2021-12-070-0/+0
| | |\ \ \ | | | | | | | | | | | | | | | | | | https://github.com/vchoi-hdfgroup/hdf5 into nfs_feature_vfd_swmr
| | | * | | Committing clang-format changesgithub-actions2021-12-073-28/+29
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| | * | | | Clang format changes.vchoi2021-12-073-28/+29
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| | * | | Changes to address feedback from PR review.vchoi2021-12-074-159/+167
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| | * | | Committing clang-format changesgithub-actions2021-11-1723-565/+566
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| | * | | 1) Core changes for adding NFS/updater support as described in the RFC.vchoi2021-11-1733-374/+2147
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | src/H5Pfapl.c src/H5Fvfd_swmr.c src/H5Fpublic.h src/H5Fpkg.h src/H5Fprivate.h 2) For VFD SWMR testing, add private property for checksum generation of metadata files: src/H5Fint.c src/H5Fvfd_swmr.c src/H5Pfapl.c src/H5Fpkg.h src/H5Fprivate.h 3) Fix the following in H5F_vfd_swmr_init() and H5F_vfd_swmr_close_or_flush(): (a) Allocate metadata file index right after metadata file header. (b) Set tick number to 0 when creating header and index for file open case. (c) Remove tick number increment at file close. src/H5Fvfd_swmr.c src/H5Ftest.c 4) To be consistent with the RFC, change the name for field "chksum" to "checksum" in struct H5FD_vfd_swmr_idx_entry_t: src/H5FDprivate.h src/H5FDtest.c src/H5FDvfd_swmr.c src/H5Ftest.c src/H5PB.c 4) Add tests for NFS/updater test/vfd_swmr.c 5) Modify common routine init_vfd_swmr_config() to accept updater_file_path test/vfd_swmr_common.c test/vfd_swmr_common.h 6) Changes to the tests due to the common routine init_vfd_swmr_config(): test/vfd_swmr_addrem_writer.c test/vfd_swmr_attrdset_writer.c test/vfd_swmr_bigset_writer.c test/vfd_swmr_dsetchks_writer.c test/vfd_swmr_dsetops_writer.c test/vfd_swmr_generator.c test/vfd_swmr_gfail_writer.c test/vfd_swmr_gperf_writer.c test/vfd_swmr_group_writer.c test/vfd_swmr_reader.c test/vfd_swmr_remove_reader.c test/vfd_swmr_remove_writer.c test/vfd_swmr_sparse_reader.c test/vfd_swmr_sparse_writer.c test/vfd_swmr_vlstr_reader.c test/vfd_swmr_vlstr_writer.c test/vfd_swmr_writer.c test/page_buffer.c
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