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* [svn-r29016] Merge of r28936, 28949, 28960-29009 from trunk.Dana Robinson2016-01-2942-525/+1724
| | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ Fortran and C++ autotools parallel (MPICH 3.1.4) w/ Fortran CMake serial (3.3.2, via cmakehdf5)
* [svn-r29014] h5format_convert(): fix to downgrade superblock version and ↵Vailin Choi2016-01-2912-91/+188
| | | | | | | | persistent file space so 1.8 library can open/read the file. Tested on ostrich, kituo, platypus, moohan, quail, emu. More tests will be added later.
* [svn-r28988] Merge of r28986 from trunk (H5_DLLVAR H5AC_dxpl_id).Dana Robinson2016-01-271-1/+1
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial and parallel
* [svn-r28940] Merge revision #28852 from hdf5_1_10_alpha1 to revise_chunks.Vailin Choi2016-01-2010-2/+122
| | | | | | This is the fix to downgrade superblock version for the tool h5format_convert so DLS can use 1.8 h5dump on the converted file. Tested on jam, platypus, moohan, osx1010test.
* [svn-r28931] Merge of r28905, 28906 from trunk (C++ array bugfix).Dana Robinson2016-01-2011-57/+409
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial, C++ only
* [svn-r28920] Description:Quincey Koziol2016-01-152-2/+2
| | | | | | | | | | | Bring r28918 from trunk to the revise_chunks branch: I missed changes to a couple of expected error output files with the last checkin. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28917] Description:Quincey Koziol2016-01-1513-251/+346
| | | | | | | | | | Bring r28916 from trunk to revise_chunks branch: Normalize against incoming changes from the phdf5_metadata_opt branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28908] Fix for multi-thread file pointer seg fault from H5Dread() and ↵Vailin Choi2016-01-1512-9/+456
| | | | | | H5Dget_storage_size(). Tested on jam, platypus, moohan, ostrich, osx1010test, quail, emu, kite.
* [svn-r28900] Description:Quincey Koziol2016-01-1414-212/+212
| | | | | | | | | | Bring r28894 from trunk to revise_chunks branch: Normalize against changes on phdf5_metadata_opt branch to trunk Tested on: MacoSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not requird on this branch)
* [svn-r28889] Merge of r28865, 28866, 28868, 28885 from trunk (h5dump bugfix).Dana Robinson2016-01-136-74/+128
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial
* [svn-r28880] Added a shell script to flip maintainer mode in configure.ac. ↵Dana Robinson2016-01-132-0/+84
| | | | | | | | This can be called by other shell scripts when we create release branches. Tested on: linux VM
* [svn-r28879] Merge of r28878 from trunk (minor comment fix in configure.ac).Dana Robinson2016-01-131-3/+0
| | | | Tested on: N/A
* [svn-r28874] Merge of r28861 from trunk (minor string format change). Fixes ↵Dana Robinson2016-01-132-3/+3
| | | | | | | HDFFV-9640. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 parallel only (MPICH 3.1.4)
* [svn-r28872] Changed time to HDtime in H5AClog.c functions.Dana Robinson2016-01-131-16/+16
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28863] Whitespace and commenting cleanup before changes.Dana Robinson2016-01-121-276/+364
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 testhdf5 only
* [svn-r28857] Merged r28841 and 28853 from trunk (cmakehdf5 changes)Dana Robinson2016-01-111-113/+122
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 CMake (3.3.2) serial only w/ C++ anf Fortran
* [svn-r28844] Description:Quincey Koziol2016-01-081-1/+1
| | | | | | | | | | Bring r28843 from trunk to revise_chunks branch: Bump number of records for random update test again. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28836] Fixed the test/tarray.c test in testhdf5.Dana Robinson2016-01-071-4/+4
| | | | Ostrich w/ gcc
* [svn-r28833] Description:Quincey Koziol2016-01-061-1/+3
| | | | | | | | | | Bring r28832 from trunk to revise_chunks branch: Reset driver info message when superblock load fails. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28829] Description:Quincey Koziol2016-01-061-2/+2
| | | | | | | | | | | Bring r28828 from trunk to revise_chunks branch: Switch filter plugin to use H5allocate_memory and H5free_memory instead of malloc and free. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28825] Description:Quincey Koziol2016-01-061-3/+0
| | | | | | | | | | Bring r28824 from trunk to revise_chunks branch: Reduce asserts on buffer alignment. Tested on: MacOSX/64 10.11.2 (amazon) w/parallel & serial (h5committest not required on this branch)
* [svn-r28820] Description:Quincey Koziol2016-01-062-14/+48
| | | | | | | | | Bring r28815 & r28819 from trunk to revise chunks branch (memory alloc sanity checking fixes). Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial
* [svn-r28816] Cleaned up warnings in test/tarray.c before major rework.Dana Robinson2016-01-061-84/+84
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28812] Description:Quincey Koziol2016-01-063-10/+10
| | | | | | | | | | | Bring r28811 from trunk to revise_chunks branch: Switch v2 B-tree min & max records to be void*'s to be cleaner and generate less warnings. Tested on: Linux/32 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
* [svn-r28806] Merge from trunk:Dana Robinson2016-01-052-2/+18
| | | | | | | | | | | | 28792 - H5Epubgen.h extern C fix 28788 - cleanup of new files in tfile.c Merge from hdf5_1_10_alpha: 28706 - only test (release-1) when release # > 0 in major/minor/release checks Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28803] Description:Quincey Koziol2016-01-059-66/+59
| | | | | | | | | | Bring r28797, r28798, r28800, and r28802 from trunk to revise_chunks branch: Misc. memory allocation cleanups Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28796] Description:Quincey Koziol2016-01-052-3/+8
| | | | | | | | | | Bring r28795 from trunk to revise_chunks branch: Clean up more memory allocation mis-matches. Tested on: Linux/32 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
* [svn-r28791] Description:Quincey Koziol2016-01-041-2/+2
| | | | | | | | Portability fix from 'SIZE_T_MAX' to 'SIZET_MAX'. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial
* [svn-r28783] Description:Quincey Koziol2016-01-041-1/+3
| | | | | | | | Comment out v2 B-tree test while I debug it. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28782] Description:Quincey Koziol2016-01-0412-54/+403
| | | | | | | | | | | | Bring r28777 from trunk to revise_chunks branch: Add --enable-memory-alloc-sanity-check option to configure, to track and sanity check memory allocations within the library. This is orthogonal to the --enable-using-memchecker option and can be used with/without it. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28778] Description:Quincey Koziol2016-01-036-197/+144
| | | | | | | | | Clean up object header proxy code, while tracking down the v2 B-tree SWMR failures. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28774] Description:Quincey Koziol2016-01-031-1/+13
| | | | | | | | | | | Bring r28773 from trunk to revise_chunks branch: Clear memory for shared message info when "deferring" and using memory checker, so valgrind doesn't whine. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28770] Description:Quincey Koziol2016-01-033-0/+8
| | | | | | | | | | Bring r28769 from trunk to revise_chunks branch: More memory cleanups and leak elimination. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28766] Description:Quincey Koziol2016-01-021-1/+1
| | | | | | | | | Bring r28765 from trunk to branch (bump # of records for level 4 B-tree updates) Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28762] Description:Quincey Koziol2016-01-0118-123/+483
| | | | | | | | Bring r28761 from the trunk to the revise_chunks branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28755] Description:Quincey Koziol2015-12-303-184/+77
| | | | | | | | | Minor cleanups, and remove debugging context create/destroy callbacks from dataset v2 B-tree class structures. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28746] Description:Quincey Koziol2015-12-295-44/+32
| | | | | | | | | | Now that v2 B-trees can perform 'update' operations, remove 'need_modify' flag from chunk information and switch v2 B-tree chunk index to use update operation. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28744] Description:Quincey Koziol2015-12-2912-389/+3121
| | | | | | | | | | | Bring r28742 from trunk, adjusting to shadow B-tree nodes for SWMR: Add 'update' operation to v2 B-trees, which will insert a new record, or modify an existing one, depending on if the record exists or not. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28728] Fix for H5Drefresh() problem from DLS with multiple opens of a ↵Vailin Choi2015-12-267-200/+1668
| | | | | | | dataset. Fix for H5Ffstart_swmr_write() with multiple opens of files and datasets. Tested on jam, osx1010test, moohan, ostrich, emu, platypus, kite, quail.
* [svn-r28726] Description:Quincey Koziol2015-12-233-5/+4
| | | | | | | | Minor code cleanups Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (too minor for h5committest)
* [svn-r28722] Description:Quincey Koziol2015-12-226-26/+1
| | | | | | | | Remove unused code and align w/trunk. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committtest not required on this branch)
* [svn-r28718] Description:Quincey Koziol2015-12-212-14/+0
| | | | | | | | Remove unused comments/code. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28712] Description:Quincey Koziol2015-12-1929-564/+264
| | | | | | | | | Switch v2 B-trees to use the same mechanism for setting up flush dependencies as extensible and fixed arrays. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28708] Description:Quincey Koziol2015-12-1914-268/+699
| | | | | | | | | | Fix earray, farray and btree2 use of incorrect file pointer when two files are opened and used to access the data structure. Misc. minor code cleanups as well. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28698] Minor normalization with trunk.Dana Robinson2015-12-172-8/+2
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28694] Fix for the refresh problem from DLS with --enable-threadsafe.Vailin Choi2015-12-161-0/+3
| | | | | This is part I of the fix for object refresh: no refresh action needed if the file is the writer. Tested on jam, platypus, os1010test, emu, moohan, ostrich.
* [svn-r28692] Merge of r28669 from trunk. Minor // comment removal.Dana Robinson2015-12-162-5/+3
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28685] Move project to the HDF% 1.10 CDash pageAllen Byrne2015-12-161-2/+2
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* [svn-r28683] Merged r28638 from trunk.Albert Cheng2015-12-161-266/+0
| | | | | | | | HDFFV-9273: cmakehdf5 --script failed in linux platypus Solution: remove --script option from cmakehdf5. Tested: platypus
* [svn-r28680] Updated the cache_tagging test to correctly output tags inDana Robinson2015-12-161-62/+62
| | | | | | | the debug/verbose function. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
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