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* [svn-r29224] Brought alpha2 branch in sync with revise_chunks (up to r29219)Dana Robinson2016-02-29314-13446/+20113
|\ | | | | | | | | | | | | | | | | | | | | Note: generated autotools files are from a VM and not THG machines. These will be updated immediately after check-in. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran & C++ autotools parallel (MPICH 3.1.4) w/ Fortran CMake serial (cmakehdf5 w/ CMake 3.3.2)
| * [svn-r29219] Merge of r29062, 29074, 29092Dana Robinson2016-02-2720-19/+1219
| | | | | | | | | | | | | | | | Fortran VDS wrappers and bugfixes. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran autotools parallel w/ Fortran
| * [svn-r29210] Merge of r28950 and 28957 from trunk Dana Robinson2016-02-2552-544/+547
| | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ Fortran & C++ autotools parallel (MPICH 3.1.4) w/ Fortran
| * [svn-r29208] Merge of r29032 from trunk Dana Robinson2016-02-251-1/+6
| | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ Fortran & C++ autotools parallel (MPICH 3.1.4) w/ Fortran
| * [svn-r29206] Merge h5dump VDS support from trunk:Dana Robinson2016-02-2533-149/+1267
| | | | | | | | | | | | | | | | | | r29186, r29190, r29198 Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial cmakehdf5 (CMake 3.2.2) chkmanifest
| * [svn-r29205] Merge from trunk:Dana Robinson2016-02-258-627/+914
| | | | | | | | | | | | | | r28635, 28902, 29030, 29034, 29035, 29119, 29132, 29158 Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (debug w/ C++ & Fortran)
| * [svn-r29193] Added POSIX wrappers for a few SWMR test functions thatDana Robinson2016-02-2312-23/+23
| | | | | | | | | | | | | | | | were missed. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial CMake serial (build only)
| * [svn-r29189] Updated CMake to build SWMR and SWMR VDS test files.Dana Robinson2016-02-2313-452/+501
| | | | | | | | | | | | | | Many SWMR test files were updated to include h5test.h and use HD posix function wrappers so they will compile on Windows. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 & CMake 3.3.2 64-bit Windows 10 w/ VS 2015 Pro & CMake 3.3.1
| * [svn-r29159] Merge of r29019 from trunk.Dana Robinson2016-02-191-1/+7
| | | | | | | | | | | | Fixes double declaration of a couple of types from the LFS changes. Tested on: 64-bit Windows 10 w/ VS 2015 Pro
| * [svn-r29148] Merged autotools LFS changes (r29011) from trunk.Dana Robinson2016-02-183-88/+23
| | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (debug w/ C++ & Fortran) autotools parallel (MPICH 3.1.4, debug w/ Fortran)
| * [svn-r29146] Merged autotools changes from the trunk:Dana Robinson2016-02-1816-130/+283
| | | | | | | | | | | | | | | | r29050, 29090, 29127, 29129, 29131, 29134, 29139, 29142 Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (debug/release w/ C++ & Fortran) autotools parallel (MPICH 3.1.2, debug w/ Fortran)
| * [svn-r29136] Added code to main routine of objcopy to close the FAPL fapl2John Mainzer2016-02-171-0/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | shortly before exit. This in turn hides the property list management failure that is otherwise expressed on library shutdown when run with either the split or multi file drivers. Needless to say, this is a bandaid. The actual cause of the problem must be found and dealt with. Tested on Jam -- serial/debug/check-vfd
| * [svn-r29114] Updated test code of HDFFV-9672 to correct error exposed by John Mainzer2016-02-151-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | builds with the --with-default-api-version=v16 configure option. Tested on Mercury (serial/debug & serial/debug/v16_api) Jam (serial/debug) NOTE: In the serial/debug test on Mercury, I encountered the following assertion failure in testh5watch.sh: H5Fsfile.c:63: H5F_sfile_assert_num: Assertion `H5F_sfile_head_g == ((void *)0)' failed. As this was clearly unrelated to my change, I went ahead with the checkin.
| * [svn-r29103] Checkin of test code for fix of HDFFV-9672.John Mainzer2016-02-141-0/+276
| | | | | | | | | | Tested: jam serial/debug mercury serial/debug, parallel/debug
| * [svn-r29099] Merged r29094 from trunk. Fixes H5B slowdown.Dana Robinson2016-02-122-3/+8
| | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial CMake serial
| * [svn-r29068] Minor clean up of mixed tabs and spaces in testswmr.sh.in.Dana Robinson2016-02-081-10/+12
| | | | | | | | Tested on: Local linux VM (testswmr.sh only)
| * [svn-r29064] Update MANIFEST due to checkin #29048 to revise_chunks.Vailin Choi2016-02-081-2/+30
| | | | | | | | Tested on jam, moohan, osx1010test.
| * [svn-r29054] Description:Quincey Koziol2016-02-062-13/+17
| | | | | | | | | | | | | | | | | | Correct error computing the number of bytes to encode dimensions with when using "latest format" by including the datatype's size in the computation. Tested on: Mac OSX/64 10.11.3 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r29052] Merged r28735 from HDF5 1.10.0 alpha branch.Dana Robinson2016-02-064-134/+166
| | | | | | | | | | | | | | | | | | Fix for incorrect chunk size setup with array types in new chunk indices (extensible and fixed arrays, v2 B-trees) which was reported by ITER (JIRA issue SWMR-99). Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 Autotools serial, parallel (MPICH 3.1.4)
| * [svn-r29048] Fix to h5format_convert tool:Vailin Choi2016-02-0547-519/+1577
| | | | | | | | | | | | (1) Downgrade layout version to 3 for contiguous and compact dataset (2) Add new test files for testing with/without messages in superblock extension. Tested on jam, osx1010test, platypus, quail, ostrich, kite, moohan, kituo, mayll, emu.
| * [svn-r29028] Description:Quincey Koziol2016-02-024-41/+97
| | | | | | | | | | | | | | | | | | | | | | | | | | When SWMR writes are enabled, correct record update algorithm to indicate to parent node when a child node that was "only" modified was also "shadowed", so that parent node can update itself (since the address of its child node will move when it is shadowed). Re-enable v2 B-tree SWMR testing. Tested on: MacOSX/64 10.11.3 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r29024] Merge of r29023 from trunk. Fixes typos in configure that preventDana Robinson2016-02-015-10/+10
| | | | | | | | | | | | using symbols flags (e.g.: -g). Tested on: Local linux VM
| * [svn-r29016] Merge of r28936, 28949, 28960-29009 from trunk.Dana Robinson2016-01-2942-525/+1724
| | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ Fortran and C++ autotools parallel (MPICH 3.1.4) w/ Fortran CMake serial (3.3.2, via cmakehdf5)
| * [svn-r29014] h5format_convert(): fix to downgrade superblock version and ↵Vailin Choi2016-01-2912-91/+188
| | | | | | | | | | | | | | | | persistent file space so 1.8 library can open/read the file. Tested on ostrich, kituo, platypus, moohan, quail, emu. More tests will be added later.
| * [svn-r28988] Merge of r28986 from trunk (H5_DLLVAR H5AC_dxpl_id).Dana Robinson2016-01-271-1/+1
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial and parallel
| * [svn-r28940] Merge revision #28852 from hdf5_1_10_alpha1 to revise_chunks.Vailin Choi2016-01-2010-2/+122
| | | | | | | | | | | | This is the fix to downgrade superblock version for the tool h5format_convert so DLS can use 1.8 h5dump on the converted file. Tested on jam, platypus, moohan, osx1010test.
| * [svn-r28931] Merge of r28905, 28906 from trunk (C++ array bugfix).Dana Robinson2016-01-2011-57/+409
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial, C++ only
| * [svn-r28920] Description:Quincey Koziol2016-01-152-2/+2
| | | | | | | | | | | | | | | | | | | | | | Bring r28918 from trunk to the revise_chunks branch: I missed changes to a couple of expected error output files with the last checkin. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r28917] Description:Quincey Koziol2016-01-1513-251/+346
| | | | | | | | | | | | | | | | | | | | Bring r28916 from trunk to revise_chunks branch: Normalize against incoming changes from the phdf5_metadata_opt branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r28908] Fix for multi-thread file pointer seg fault from H5Dread() and ↵Vailin Choi2016-01-1512-9/+456
| | | | | | | | | | | | H5Dget_storage_size(). Tested on jam, platypus, moohan, ostrich, osx1010test, quail, emu, kite.
| * [svn-r28900] Description:Quincey Koziol2016-01-1414-212/+212
| | | | | | | | | | | | | | | | | | | | Bring r28894 from trunk to revise_chunks branch: Normalize against changes on phdf5_metadata_opt branch to trunk Tested on: MacoSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not requird on this branch)
| * [svn-r28889] Merge of r28865, 28866, 28868, 28885 from trunk (h5dump bugfix).Dana Robinson2016-01-136-74/+128
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial
| * [svn-r28880] Added a shell script to flip maintainer mode in configure.ac. ↵Dana Robinson2016-01-132-0/+84
| | | | | | | | | | | | | | | | This can be called by other shell scripts when we create release branches. Tested on: linux VM
| * [svn-r28879] Merge of r28878 from trunk (minor comment fix in configure.ac).Dana Robinson2016-01-131-3/+0
| | | | | | | | Tested on: N/A
| * [svn-r28874] Merge of r28861 from trunk (minor string format change). Fixes ↵Dana Robinson2016-01-132-3/+3
| | | | | | | | | | | | | | HDFFV-9640. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 parallel only (MPICH 3.1.4)
| * [svn-r28872] Changed time to HDtime in H5AClog.c functions.Dana Robinson2016-01-131-16/+16
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * [svn-r28863] Whitespace and commenting cleanup before changes.Dana Robinson2016-01-121-276/+364
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 testhdf5 only
| * [svn-r28857] Merged r28841 and 28853 from trunk (cmakehdf5 changes)Dana Robinson2016-01-111-113/+122
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 CMake (3.3.2) serial only w/ C++ anf Fortran
| * [svn-r28844] Description:Quincey Koziol2016-01-081-1/+1
| | | | | | | | | | | | | | | | | | | | Bring r28843 from trunk to revise_chunks branch: Bump number of records for random update test again. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r28836] Fixed the test/tarray.c test in testhdf5.Dana Robinson2016-01-071-4/+4
| | | | | | | | Ostrich w/ gcc
| * [svn-r28833] Description:Quincey Koziol2016-01-061-1/+3
| | | | | | | | | | | | | | | | | | | | Bring r28832 from trunk to revise_chunks branch: Reset driver info message when superblock load fails. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r28829] Description:Quincey Koziol2016-01-061-2/+2
| | | | | | | | | | | | | | | | | | | | | | Bring r28828 from trunk to revise_chunks branch: Switch filter plugin to use H5allocate_memory and H5free_memory instead of malloc and free. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r28825] Description:Quincey Koziol2016-01-061-3/+0
| | | | | | | | | | | | | | | | | | | | Bring r28824 from trunk to revise_chunks branch: Reduce asserts on buffer alignment. Tested on: MacOSX/64 10.11.2 (amazon) w/parallel & serial (h5committest not required on this branch)
| * [svn-r28820] Description:Quincey Koziol2016-01-062-14/+48
| | | | | | | | | | | | | | | | | | Bring r28815 & r28819 from trunk to revise chunks branch (memory alloc sanity checking fixes). Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial
| * [svn-r28816] Cleaned up warnings in test/tarray.c before major rework.Dana Robinson2016-01-061-84/+84
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * [svn-r28812] Description:Quincey Koziol2016-01-063-10/+10
| | | | | | | | | | | | | | | | | | | | | | Bring r28811 from trunk to revise_chunks branch: Switch v2 B-tree min & max records to be void*'s to be cleaner and generate less warnings. Tested on: Linux/32 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
| * [svn-r28806] Merge from trunk:Dana Robinson2016-01-052-2/+18
| | | | | | | | | | | | | | | | | | | | | | | | 28792 - H5Epubgen.h extern C fix 28788 - cleanup of new files in tfile.c Merge from hdf5_1_10_alpha: 28706 - only test (release-1) when release # > 0 in major/minor/release checks Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * [svn-r28803] Description:Quincey Koziol2016-01-059-66/+59
| | | | | | | | | | | | | | | | | | | | Bring r28797, r28798, r28800, and r28802 from trunk to revise_chunks branch: Misc. memory allocation cleanups Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r28796] Description:Quincey Koziol2016-01-052-3/+8
| | | | | | | | | | | | | | | | | | | | Bring r28795 from trunk to revise_chunks branch: Clean up more memory allocation mis-matches. Tested on: Linux/32 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
| * [svn-r28791] Description:Quincey Koziol2016-01-041-2/+2
| | | | | | | | | | | | | | | | Portability fix from 'SIZE_T_MAX' to 'SIZET_MAX'. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial