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* Merge pull request #347 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-03-192-8/+8
|\ | | | | | | | | | | | | hdf5_1_10 * commit 'd60ca826c00533d72f94e38c1b2cf790e1b3f190': Change version for h5repack_plugin.sh.in and expected output ddl file for plugin_version_test.
| * Change version for h5repack_plugin.sh.in and expected output ddl file for ↵lrknox2017-03-192-8/+8
|/ | | | plugin_version_test.
* Merge pull request #345 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-03-182-2/+25
|\ | | | | | | | | | | | | hdf5_1_10 * commit '72eddf198d6a7c1b103356f9141a2b4fb8c79abf': CTestConfig.cmake: Report results to HDF5110 in buildbot and CDash.
| * Merge branch 'hdf5_1_10' of ↵lrknox2017-03-170-0/+0
| |\ | |/ |/| | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into hdf5_1_10
* | Merge pull request #343 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-03-178-13/+13
|\ \ | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '9187d41af616b6c8064ab0af5c85d4dd93cff50d': Update version numbers in HDF5config.cmake and 2 java files. h5vers script missed them, will need updating. set initial version for HDF5 1.10.1.
| | * CTestConfig.cmake:lrknox2017-03-172-2/+25
| |/ | | | | | | | | | | | | | | Report results to HDF5110 in buildbot and CDash. testswmr.sh.in: Run swmr tests in their own subdirectory of test to avoid signal file deletion by other tests.
| * Update version numbers in HDF5config.cmake and 2 java files. h5verslrknox2017-03-173-5/+5
| | | | | | | | script missed them, will need updating.
| * set initial version for HDF5 1.10.1.lrknox2017-03-175-8/+8
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* Merge pull request #334 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp2:develop ↵Binh-Minh Ribler2017-03-1615-14/+490
|\ | | | | | | | | | | | | to develop * commit '98090fe3b08a0ff85ae9bc93218a14017a6f37fe': Purpose: Add new C++ wrappers Description: Added wrappers for H5Iis_valid, H5Ps/get_nlinks, H5Tget_create_plist, H5Oopen, H5Oclose and H5Pset_virtual
| * Merge branch 'develop' of ↵Binh-Minh Ribler2017-03-1428-824/+2060
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp2 into develop
| * | Purpose: Add new C++ wrappersBinh-Minh Ribler2017-03-1415-14/+490
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Added wrappers for H5Iis_valid, H5Ps/get_nlinks, H5Tget_create_plist, H5Oopen, H5Oclose and H5Pset_virtual // Checks if the given ID is valid. static bool isValid(hid_t an_id); // Sets the number of soft or user-defined links that can be // traversed before a failure occurs. void setNumLinks(size_t nlinks) const; // Gets the number of soft or user-defined link traversals allowed size_t getNumLinks() const; // Returns a copy of the creation property list of a datatype. PropList getCreatePlist() const; // Opens an object within a group or a file, i.e., root group. hid_t getObjId(const char* name,...); hid_t getObjId(const H5std_string& name,...); // Closes an object opened by getObjId(). void closeObjId(hid_t obj_id) const; // Maps elements of a virtual dataset to elements of the source dataset. void setVirtual(const DataSpace& vspace, const char *src_fname,...); void setVirtual(const DataSpace& vspace, const H5std_string src_fname,...); Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* | | Merge pull request #336 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-03-168-314/+409
|\ \ \ | | | | | | | | | | | | | | | | * commit 'f21374c455b713df8e866d0ebfddece7874b0f47': HDFFV-10138 Merge app framework to examples
| * \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2017-03-161-1/+1
| |\ \ \ | |/ / / |/| | | | | | | | | | | * commit '887783eb0e9a1787c77092ed53a7737ad4aaac3a': Switch from HDatoll to HDstrtoll, for Windows compatibility.
* | | | Merge pull request #339 in HDFFV/hdf5 from merge_page_buffering_10 to developQuincey Koziol2017-03-161-1/+1
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | * commit 'a16d142f80630b11ac45c0bcf00ee2ea5b88f08e': Switch from HDatoll to HDstrtoll, for Windows compatibility.
| * | | | Switch from HDatoll to HDstrtoll, for Windows compatibility.Quincey Koziol2017-03-161-1/+1
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| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2017-03-163-11/+39
| |\ \ \ | |/ / / |/| | | | | | | | | | | | | | | * commit 'cee9624b0febcb60a7b2699262104e9eaf20313d': output_filter.sh: Comment added to address HDFFV-8270. The sample ontput in the file's comments are not up-to-date with the scripts in the file that remove output unique to certain systems when running test scripts. This output doesn't match expected output files for the tests, causing them to fail. Ther output_filter.sh file removes such output. Currently we don't have access to these systems to update the comments. Correct double sourcedir name on copied datafiles.
* | | | Merge pull request #338 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2017-03-162-5/+37
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | * commit '98567db19290dc07cc86efae720b0dc457ae9f65': output_filter.sh: Comment added to address HDFFV-8270. The sample ontput in the file's comments are not up-to-date with the scripts in the file that remove output unique to certain systems when running test scripts. This output doesn't match expected output files for the tests, causing them to fail. Ther output_filter.sh file removes such output. Currently we don't have access to these systems to update the comments.
| * | | | output_filter.sh:lrknox2017-03-152-5/+37
|/ / / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Comment added to address HDFFV-8270. The sample ontput in the file's comments are not up-to-date with the scripts in the file that remove output unique to certain systems when running test scripts. This output doesn't match expected output files for the tests, causing them to fail. Ther output_filter.sh file removes such output. Currently we don't have access to these systems to update the comments. testflushrefresh.sh.in: flushrefresh and other SWMR tests have been failing occasionally but regularly since bringing them to the develop branch. The logs and debugging point to unexpected deletion of signal files as the point of failure, and John Mainzer suggests that two such tests running simultaneously in the same directory may lead to the operating system deleting the other test's signal file. Running the flushrefresh test in its own directory seems to solve the problem.
* | | | Merge pull request #337 in HDFFV/hdf5 from merge_page_buffering_09 to developQuincey Koziol2017-03-151-6/+2
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | * commit 'ecfdadfb1eff5ae8f18269e33dce3856e22f4bd7': Correct double sourcedir name on copied datafiles.
| * | | | Correct double sourcedir name on copied datafiles.Quincey Koziol2017-03-151-6/+2
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| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2017-03-14202-5762/+20987
| |\ \ \ | |/ / / |/| | | | | | | | | | | * commit 'd0aeefd6455d6877afd934e238362636a86e4b42': Final merge of page buffering branch to develop
* | | | Merge pull request #335 in HDFFV/hdf5 from merge_page_buffering_08 to developQuincey Koziol2017-03-14202-5762/+20987
|\ \ \ \ | |_|_|/ |/| | | | | | | | | | | * commit '0313cbb91d974b153dbe8747d193ac3c619eea3b': Final merge of page buffering branch to develop
| * | | Final merge of page buffering branch to developQuincey Koziol2017-03-14202-5762/+20987
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| * | HDFFV-10138 Merge app framework to examplesAllen Byrne2017-03-148-314/+409
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* | Merge pull request #333 in HDFFV/hdf5 from merge_page_buffering_07 to developQuincey Koziol2017-03-1328-824/+2060
|\ \ | |/ |/| | | | | | | | | | | | | * commit '4fad103187db9095afc8eab90b5f5544feb1d19b': Bring changes to I/O parameters from page_buffering branch. Merge in reentrency changes to "make space in cache" from page_buffering branch. Minor cleanups and bring over "prefetched dirty" fixes for entries loaded from a cache image. Remove some usage of "prefetched_dirty" flag (which hasn't been merged from the page_buffering branch yet. Also, bring over improvements to flush candidate entries for parallel code. Align with incoming page buffering changes: minor cleanups, centralize removing entries from collective metadata read list
| * Bring changes to I/O parameters from page_buffering branch.Quincey Koziol2017-03-1314-249/+355
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| * Merge in reentrency changes to "make space in cache" from page_buffering branch.Quincey Koziol2017-03-134-51/+733
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| * Minor cleanups and bring over "prefetched dirty" fixes for entries loaded fromQuincey Koziol2017-03-1212-34/+265
| | | | | | | | a cache image.
| * Remove some usage of "prefetched_dirty" flag (which hasn't been merged from theQuincey Koziol2017-03-103-416/+577
| | | | | | | | | | page_buffering branch yet. Also, bring over improvements to flush candidate entries for parallel code.
| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2017-03-104-22/+43
| |\ | |/ |/| | | merge_page_buffering_07
* | Merge pull request #330 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2017-03-091-1/+1
|\ \ | | | | | | | | | | | | | | | * commit 'd297ee6e82adbbbbca168997953cdf0c5a3922eb': updated AM_SILENT_RULES syntax Added a check for AM_SILENT_RULES before enabling it.
| * | updated AM_SILENT_RULES syntaxM. Scot Breitenfeld2017-03-091-1/+1
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| * | Added a check for AM_SILENT_RULES before enabling it.M. Scot Breitenfeld2017-03-081-1/+1
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* | Merge pull request #328 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-03-083-21/+42
|\ \ | | | | | | | | | | | | | | | * commit '71fa3dc480d9d6b1ea00c4f10e9ee0ec10c2c8d9': Fix alignment Fix vds tests
| * | Fix alignmentAllen Byrne2017-03-081-9/+9
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2017-03-0878-14533/+14522
| |\ \ | |/ / |/| | | | | | | | * commit '7942414b24288d497d4878754319dffa24bbec11': Description: Only format changes: mostly tabs vs. spaces Platforms tested: Linux/64 (jelly) - very minor
| * | Fix vds testsAllen Byrne2017-03-073-12/+33
| | | | | | | | | | | | java wrong call vds test - missing checks and if content
| | * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2017-03-0778-14533/+14522
| | |\ | |_|/ |/| | | | | merge_page_buffering_07
* | | Merge pull request #323 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp:develop to ↵Binh-Minh Ribler2017-03-0778-14533/+14522
|\ \ \ | |/ / |/| | | | | | | | | | | | | | | | | | | | develop Replaces tabs with spaces. * commit '8f5a1f43d0cf527488be2b2805bac2b6c86b8c66': Description: Only format changes: mostly tabs vs. spaces Platforms tested: Linux/64 (jelly) - very minor
| * | Merge branch 'develop' of ↵Binh-Minh Ribler2017-03-0386-2062/+1929
| |\ \ | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp into develop
| * | | Description:Binh-Minh Ribler2017-03-0378-14533/+14522
| | | | | | | | | | | | | | | | | | | | | | | | Only format changes: mostly tabs vs. spaces Platforms tested: Linux/64 (jelly) - very minor
| | | * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2017-03-0767-830/+1135
| | | |\ | |_|_|/ |/| | | | | | | merge_page_buffering_07
* | | | Merge pull request #324 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-03-0615-75/+374
|\ \ \ \ | |_|/ / |/| | | | | | | | | | | | | | | | | | | | | | | * commit 'cceddc6b4f002fe98470f9f6af5dbf9f6461c95a': Correct result code for strings test Add extension to filename HDFFV-10128 fix string compare and add tests Lowercase math and set CMake commands
| * | | Correct result code for strings testAllen Byrne2017-03-031-4/+4
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| * | | Add extension to filenameAllen Byrne2017-03-031-4/+4
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| * | | HDFFV-10128 fix string compare and add testsAllen Byrne2017-03-0311-60/+359
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| * | | Lowercase math and set CMake commandsAllen Byrne2017-03-024-15/+15
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* | | Merge pull request #321 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-03-0255-756/+762
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'f4dd30f41ccee7bcd97fba065573c5201cbcc743': Update CMake formatting Update CMake files and formatting HDFFV-10120 verify nozlib checking with tools tests cmake non-code typo
| * | | Update CMake formattingAllen Byrne2017-03-011-95/+95
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| * | | Update CMake files and formattingAllen Byrne2017-03-0154-619/+612
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