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* 1 10 merge recent changes from develop (#345)Allen Byrne2021-02-178-11/+38
| | | | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop
* 1 10 Merge #318 OSX changes from develop (#327)Allen Byrne2021-02-093-18/+7
| | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop
* Port PR #291 to 1.10 branch: Allow using virtual datasets in files opened ↵Neil Fortner2021-02-082-2419/+2544
| | | | | | | | | | with H5F_CLOSE_SEMI and H5F_CLOSE_STRONG (#323) * Modify VDS code to always open source files with H5F_CLOSE_WEAK close (#291) degree. Add test cases to VDS test for this, and reduce the amount of output from that test. * Run formatter on H5Dvirtual.c and test/vds.c
* 1 10 merges from develop (#320)Allen Byrne2021-02-088-0/+121
| | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop
* 1 10 changes for sanitize=address (#313)Allen Byrne2021-02-055-12/+14
| | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop
* Warnings merge 110 (#300)Allen Byrne2021-02-0424-85/+572
| | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * Merge dev warnings refactor from develop
* 1 10 merges from develop (#298)Allen Byrne2021-02-0439-264/+465
| | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms
* 1 10 Whitespace changes after clang-format run (#287)Allen Byrne2021-01-2919-75/+264
| | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes
* Improve performance of multiple calls to H5Sget_select_elem_pointlist (#270) ↵Neil Fortner2021-01-223-8/+39
| | | | | | | | | | | (#276) * Cache the pointer to the next point to process after the last call to H5S__get_select_elem_pointlist. This allows the normal process of iterating over the points in batches to be much more efficient, as the library does not need to traverse the entirety of the preceding points every time the funciton is re-entered. * Update RELEASE.txt for point selection iteration performance fix.
* Stat st blocks fix 110 (#249)Larry Knox2021-01-112-3/+12
| | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Modify temporary rpath for testing in java example scripts. (#230) * Fixes Autotools detection of the st_blocks field in stat (#246) * Fixes Autotools detection of the st_blocks field in stat The Autotools and CMake will now both correctly determine if the stat struct has the st_blocks field and set H5_HAVE_STAT_ST_BLOCKS appropriately. * Fixes a typo in configure.ac Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
* Hdf5 1 10 - Modify temporary rpath for testing in java example scripts (#243)Larry Knox2021-01-064-5/+37
| | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Modify temporary rpath for testing in java example scripts. (#230) Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org>
* 1 10 Remove duplicate setting (#238)Allen Byrne2021-01-051-1/+0
| | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting
* HDFFV-10865 - merge from dev, HDFArray perf fix. (#234)Allen Byrne2020-12-292-185/+130
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* Update pkgconfig settings with version - #218 (#222)Allen Byrne2020-12-225-10/+10
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* close #195. (#196) (#198)Larry Knox2020-12-171-2/+2
| | | | | | | * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org>
* OESS-98 fix hdf5 link target (#190)Allen Byrne2020-12-161-2/+1
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* OESS-98 fix tools test for plugins (#179)Allen Byrne2020-12-152-15/+18
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* OESS-98 Update plugin build option (#172)Allen Byrne2020-12-1511-172/+222
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* Add Makefile.ins in utils directory to MANIFEST. (#156)Larry Knox2020-12-111-0/+2
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* hdf5 1 10 release text (#111)Allen Byrne2020-11-235-1192/+4166
| | | | | | | * Merge changes from 1.12/dev * Add chkmanifest * Update release text files, mostly whitespace
* hdf5 1 10 merge changes from dev (#107)Allen Byrne2020-11-205-4/+4
| | | | | * Merge changes from 1.12/dev * Add chkmanifest
* Add doxygen framework for CMake and autotools (#90)Allen Byrne2020-11-2020-9/+4525
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* Merge pull request #94 from lrknox/hdf5_1_10Larry Knox2020-11-131-1/+1
|\ | | | | Fix spelling of metadata
| * Fix spelling of metadataLarry Knox2020-11-131-1/+1
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* Merge pull request #86 from byrnHDF/hdf5_1_10Larry Knox2020-11-1222-91/+64
|\ | | | | Correct TARGET variable and CMake config file location
| * Correct TARGET variable and CMake config file locationAllen Byrne2020-11-1222-91/+64
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* Merge pull request #74 from byrnHDF/hdf5_1_10Larry Knox2020-11-0548-330/+4691
|\ | | | | HDFFV-10868 1 10 java merge from develop
| * HDFFV-10868 add release noteAllen Byrne2020-11-051-1/+8
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| * HDFFV-10868 merge java changes from developAllen Byrne2020-11-0347-329/+4683
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* Merge pull request #58 from byrnHDF/hdf5_1_10Larry Knox2020-10-247-14/+14
|\ | | | | OESS-98 - add option to build plugin library with hdf5
| * OESS-98 - add option to build plugin library with hdf5Allen Byrne2020-10-237-14/+14
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* Merge pull request #54 from byrnHDF/hdf5_1_10Larry Knox2020-10-221-0/+14
|\ | | | | 1.10 Close test allocations
| * Close test allocationsAllen Byrne2020-10-211-0/+14
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* | Merge pull request #51 from byrnHDF/hdf5_1_10Larry Knox2020-10-203-3/+5
|\ \ | |/ | | URL and options corrections
| * URL and options correctionsAllen Byrne2020-10-193-3/+5
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* | Merge pull request #44 from byrnHDF/hdf5_1_10Larry Knox2020-10-1966-196/+705
|\ \ | |/ | | OESS-98 add CMake option to build plugins project within hdf5
| * Add missing file referenceAllen Byrne2020-10-191-0/+1
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| * Whitespace changesAllen Byrne2020-10-194-23/+23
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| * OESS-98 add CMake option to build plugins project within hdf5Allen Byrne2020-10-1661-173/+681
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* Mostly whitespace and comment cleanup. (#39)Allen Byrne2020-10-1516-249/+243
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* Merge pull request #29 from byrnHDF/hdf5_1_10Larry Knox2020-10-0829-6019/+6054
|\ | | | | Merge from develop and 1.12
| * Merge from develop and 1.12Allen Byrne2020-10-0829-6019/+6054
| | | | | | | | Comments and whitespace No cache, select or file-locking changes
* | Merge pull request #26 from byrnHDF/hdf5_1_10Larry Knox2020-10-0717-4192/+3906
|\ \ | |/ | | Merge from develop
| * Merge from developAllen Byrne2020-10-0717-4192/+3906
|/ | | | | | github updates bin scripts updates parser changes remove obsolete file
* Merge pull request #21 from byrnHDF/hdf5_1_10Larry Knox2020-10-064-10/+4
|\ | | | | h5repacktest VFD fix and formatting changes
| * h5repacktest VFD fix and formatting changesAllen Byrne2020-10-054-10/+4
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* | Merge pull request #14 from lrknox/hdf5_1_10Larry Knox2020-10-052-27/+38
|\ \ | |/ |/| Correct entries related to --enable-build-mode and --enable-profiling in
| * Merge branch 'hdf5_1_10' of https://github.com/HDFGroup/hdf5 into hdf5_1_10Larry Knox2020-10-0511-25/+25
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* | Merge pull request #17 from byrnHDF/hdf5_1_10Larry Knox2020-10-0511-25/+25
|\ \ | | | | | | Hdf5 1 10
| * | Convert testEquals to test containsAllen Byrne2020-10-051-2/+2
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