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* Merge SZ plugin changes from develop (#1456)Allen Byrne2022-02-2725-73/+79
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* 1.10 Fix tools incompatibility (#1449)Allen Byrne2022-02-2723-502/+722
| | | | | | | | | * fix tools incompatibility with get_option #1443 * Fix get_option function * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Unify handling of collective metadata reads status (#1206) (#1418)jhendersonHDF2022-02-0411-138/+366
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* 1 10 Remove const from the argv tools/tests main sig. #1390 (#1405)Allen Byrne2022-01-3140-103/+107
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* Merge Update code owners file with more names #1386 (#1408)Allen Byrne2022-01-311-15/+15
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* Fix cmake dynamic analysis on windows (#1377)Allen Byrne2022-01-192-5/+21
| | | | Fix sanitizer flag form on windows Add search paths to windows code-coverage
* Merge various cleanup java test, test files, comments (#1364)Allen Byrne2022-01-1913-42/+47
| | | Plus some spelling corrections
* Merge cmake custom command changes (#1361)Allen Byrne2022-01-191-32/+36
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* Merge Update the java slf4j logging jars to latest 1.7.33 (#1371)Allen Byrne2022-01-1421-32/+32
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* Remove duplicate memcpy in chunk_file_cb (#1291)jhendersonHDF2021-12-131-1/+0
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* Merge Fix directory variable in shell scripts #1273 (#1279)Allen Byrne2021-12-139-112/+39
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* Initialize filter mask and chunk nbytes for 'Single' chunk index (#1261) (#1275)jhendersonHDF2021-12-131-1/+7
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* Make default to build high-level tools the same as default for (#1267)Larry Knox2021-12-071-2/+5
| | | high-level library.
* Fixed minor issues. (#1257)Gerd Heber2021-12-0411-16/+13
| | | | | | | | | * Fixed minor issues. * Whoops. Forgot to commit these. * CMake update. * One more time.
* 1.10 change windows os from 2016 to latest (#1243)Allen Byrne2021-12-042-8/+8
| | | | | | | * change windows os from 2016 to latest * Upgrade the VS version used. * specify windows VS version
* Merge #1237 Add check for SDK version on windows (#1239)Allen Byrne2021-12-041-1/+1
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* Merge Fix Fortran REGEX and newlines #1226 (#1229)Allen Byrne2021-12-043-9/+9
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* Merge Github #969 Use stdout instead of file for configure check #1089 (#1205)Allen Byrne2021-11-204-158/+93
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* 1.10 Merge Add javadoc to packages - HDFFV-11285 (#1199)Allen Byrne2021-11-207-9/+282
| | | | | * Merge Add javadoc to packages - HDFFV-11285 * Correct list
* 1.10 TRILAB-266: Remove clang warnings. (#1200)H. Joe Lee2021-11-157-129/+140
| | | | | | | | | | | | | * OESS-99:Sync from develop. * TRILAB-266: Remove clang warnings. * Committing clang-format changes * TRILAB-266: Remove clang warnings. * TRILAB-266: Address @byrnHDF review. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Re-enable collective metadata reads after disabling for chunk lookup (#1175)jhendersonHDF2021-11-122-8/+26
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* Add contents of RELEASE.txt for HDF5 1.10.8 release to HISTORY-1_10.txt. (#1163)Larry Knox2021-11-041-0/+946
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* Merge Github #1019 - add Fortran developer flags #1090 (#1148)Allen Byrne2021-10-295-10/+11
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* 1.10 Merge Consolidate VFD create list macro #1132 (#1140)Allen Byrne2021-10-299-14/+17
| | | | | | | * Merge Consolidate VFD create list macro #1132 * Split dir create into separate macro * fix VFD settings
* Merge Correct java exception declarations #1121 (#1123)Allen Byrne2021-10-251-6/+9
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* 1 10 merge hdffv 10590 (#1128)Larry Knox2021-10-253-10/+54
| | | | | | | | | | * Merge pull request #60 from bmribler/develop Fix HDFFV-10590 * H5repack tests should fail if a corrupted file causes h5repack to segfault/core dump. * Remove test file, duplicate of h5repack_CVE-2018-17432.h5.
* 1.10 Merge Move test utilities to utils/test folder #1109 (#1111)Allen Byrne2021-10-2532-253/+341
| | | | | | | * Merge Move test utilities to utils/test folder #1109 * Merge Correct shell tests and c++ flag warning * Fix typo
* Merge Fixed HL_test_packet, incorrect length assignment (#1102)Allen Byrne2021-10-252-2/+11
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* Merge Remove clang warnings from develop (#1098)Allen Byrne2021-10-2511-112/+112
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* Fixed HDFFV-11150 (#356) (#1095)Larry Knox2021-10-152-3/+4
| | | | | | | | | | Description Replaced an HDassert with a check for null pointer in H5O_dec_rc() to catch null pointer in corrupted data situation. As a result, removed the null check prior to H5O_dec_rc() calls. Platforms tested: Linux/64 (jelly) Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>
* Merge delete the noerror- variants of the compiler flags files #1033 (#1092)Allen Byrne2021-10-1416-351/+74
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* 1.10 Merge Add missing dataset reference text #1081 (#1083)Allen Byrne2021-10-093-14/+47
| | | | | * Merge Add missing dataset reference text #1081 * Only print name if not printing data
* 1.10 Merge ASAN fixes (#1060)Allen Byrne2021-10-043-37/+37
| | | | | | | | * Merge ASAN fixes Fix ASAN issue in h5dump error path #1051 ASAN fix for test_ld - free sub-allocation of fields #10 * Merge Rework error allocation free.
* Update version to 1.10.9-1. (#1069)Larry Knox2021-10-039-595/+38
| | | Clear 1.10.8 entries out of RELEASE.txt.
* Update so numbers for 1.10.8 release. (#1065)Larry Knox2021-10-011-9/+9
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* Merge Upgrade libaec to 1.0.6 #1037 (#1039)Allen Byrne2021-09-291-1/+7
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* Merge Corrected path searched by CMake find_package command #1041 (#1043)Allen Byrne2021-09-294-9/+26
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* 1.10 Merge Need to match clang and versions not just "Clang" #1029 (#1031)Allen Byrne2021-09-244-22/+14
| | | | | * Merge Need to match clang and versions not just "Clang" * Merge MS clang needs EHsc flag #1035
* Merge Correction of pkg-config compile script #974 (#1026)Allen Byrne2021-09-181-1/+1
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* Merge HDFFV-11266 - add option to build HL tools #1018 (#1021)Allen Byrne2021-09-167-2/+45
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* Merge Disable fortran warning #1014 (#1016)Allen Byrne2021-09-162-7/+8
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* Fix javadoc and java warnings (#1011)Allen Byrne2021-09-164-47/+462
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* 1.10 Fixes a bad memory read and unfreed memory in fsinfo code (#893) (#1013)Larry Knox2021-09-156-14/+96
| | | | | | | | | | | | | | | | | | | | | * Fixes a bad memory read and unfreed memory in fsinfo code (#893) * Fixes a bad memory read and unfreed memory in fsinfo code The segfault from CVE-2020-10810 was fixed some time ago, but the illegal memory read and unfreed memory were not. This fix tracks some buffer sizes and errors out gracefully on errors, ensuring buffers are cleaned up and avoiding the H5FL infinite loop + abort on library close. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* H5Ztrans: (feature) Improved H5Z_xform_noop() and H5Z_xform_create() … ↵Larry Knox2021-09-145-6/+473
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | (#933) (#1007) * H5Ztrans: (feature) Improved H5Z_xform_noop() and H5Z_xform_create() function - Made a small improvement for H5Z_xform_noop() function. Now, the function will also return TRUE if the data transform function expression = "x". For this case, the HDF5 library behaves in a similar fashion as the case when no data transform function has been specified. - Improved the inline documentation of the function H5Z_xform_create() such it is more inline with the rest of the code. * Committing clang-format changes * H5Ztrans: (feature) Added 3 tests for improved H5Z_xform_noop() function - Added serial test with data transform expression = "x" to verify the improved H5Z_xform_noop() function behaves as expected. - Added 2 parallel tests with data transform expression = "x" in combination with a filter. Before, these tests will fail but with the improved H5Z_xform_noop() function they work and result in the expected behavior. - Small bug fix for one of parallel filter tests. * Committing clang-format changes * H5Ztrans: (feature) Added release note about detection of the simple data transform function "x". - Added a brief explanation about the implemented improvement of the detection of the simple data transform function "x" to the RELEASE.txt file. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1.10 Update examples version because of HDFFV-11269 (#1000)Allen Byrne2021-09-134-9/+9
| | | | | * Update examples version because of HDFFV-11269 * Correct plugin version
* Merge Fix various warnings and issues in doxygen doc generation #994 (#997)Allen Byrne2021-09-1011-69/+109
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* Update copyright headers with reproduction notice in 5 files (#993) (#1002)Larry Knox2021-09-095-42/+37
| | | | | | | | | | | * Update copyright headers with reproduction notice in 5 files that did not match terms in COPYING file . * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* h5diff test 830 should only run under serial testing (#995)Allen Byrne2021-09-081-29/+34
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* Merge Sync CMake java macros with cmake repo #982 (#992)Allen Byrne2021-09-085-369/+537
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* 1.10 Merge A batch of life-cycle examples for different modules #654 (#988)Allen Byrne2021-09-0778-1746/+4174
| | | | | * Merge A batch of life-cycle examples for different modules #654 * Change doxygen generated file location
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